Overview
Availability
- Dr Maria Chuvochina is:
- Available for supervision
Fields of research
Qualifications
- Doctor of Philosophy of Microbial Ecology, Université Joseph Fourier Grenoble 1
Research interests
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Prokaryotic taxonomy
Curation of the taxonomic framework based on genome phylogeny; tree of life, taxa boundaries and their definitions
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Prokaryotic nomenclature
Regulation of naming practices for cultured and uncultured taxa
Works
Search Professor Maria Chuvochina’s works on UQ eSpace
2024
Journal Article
Engineering the mangrove soil microbiome for selection of polyethylene terephthalate-transforming bacterial consortia
Jiménez, Diego Javier, Chaparro, Dayanne, Sierra, Felipe, Custer, Gordon F., Feuerriegel, Golo, Chuvochina, Maria, Diaz-Garcia, Laura, Mendes, Lucas William, Ortega Santiago, Yina Paola, Rubiano-Labrador, Carolina, Salcedo Galan, Felipe, Streit, Wolfgang R., Dini-Andreote, Francisco, Reyes, Alejandro and Rosado, Alexandre Soares (2024). Engineering the mangrove soil microbiome for selection of polyethylene terephthalate-transforming bacterial consortia. Trends in Biotechnology. doi: 10.1016/j.tibtech.2024.08.013
2024
Journal Article
Judicial Opinion 130
Arahal, David R., Bull, Carolee T., Christensen, Henrik, Chuvochina, Maria, Dunlap, Christopher, del Carmen Montero-Calasanz, Maria, Parker, Charles T., Vandamme, Peter, Ventosa, Antonio, Ventura, Stefano, Young, Peter and Göker, Markus (2024). Judicial Opinion 130. International Journal of Systematic and Evolutionary Microbiology, 74 (6) ARTN 006414. doi: 10.1099/ijsem.0.006414
2024
Journal Article
Putative genome contamination has minimal impact on the GTDB taxonomy
Mussig, Aaron J., Chaumeil, Pierre-Alain, Chuvochina, Maria, Rinke, Christian, Parks, Donovan H. and Hugenholtz, Philip (2024). Putative genome contamination has minimal impact on the GTDB taxonomy. Microbial Genomics, 10 (5) 001256. doi: 10.1099/mgen.0.001256
2024
Journal Article
Advancements in prokaryotic systematics and the role of Bergey's International Society for Microbial Systematics (BISMiS) in addressing challenges in the meta-data era
Yu Jiao, Jian-, Abdugheni, Rashidin, Zhang, Dao-Feng, Ahmed, Iftikhar, Ali, Mukhtiar, Chuvochina, Maria, Dedysh, Svetlana N, Dong, Xiuzhu, Göker, Markus, Hedlund, Brian P, Hugenholtz, Philip, Jangid, Kamlesh, Liu, Shuang-Jiang, Moore, Edward R B, Rao, Manik Prabhu Narsing, Oren, Aharon, Rossello-Mora, Ramon, Rekadwad, Bhagwan Narayan, Salam, Nimaichand, Shu, Wensheng, Sutcliffe, Iain C, Teo, Wee Fei Aaron, Trujillo, Martha E, Venter, Stephanus N, Whitman, William B, Zhao, Guoping and Li, Wen-Jun (2024). Advancements in prokaryotic systematics and the role of Bergey's International Society for Microbial Systematics (BISMiS) in addressing challenges in the meta-data era. National Science Review, 11 (7) nwae168, nwae168. doi: 10.1093/nsr/nwae168
2024
Journal Article
Machine learning and metagenomics identifies uncharacterized taxa inferred to drive biogeochemical cycles in a subtropical hypereutrophic estuary
Prabhu, Apoorva, Tule, Sanjana, Chuvochina, Maria, Bodén, Mikael, McIlroy, Simon J, Zaugg, Julian and Rinke, Christian (2024). Machine learning and metagenomics identifies uncharacterized taxa inferred to drive biogeochemical cycles in a subtropical hypereutrophic estuary. ISME Communications, 4 (1) ARTN ycae067. doi: 10.1093/ismeco/ycae067
2024
Journal Article
Novel spore-forming species exhibiting intrinsic resistance to third- and fourth-generation cephalosporins and description of <i>Tigheibacillus jepli</i> gen. nov., sp. nov
Miliotis, Georgios, Sengupta, Pratyay, Hameed, Asif, Chuvochina, Maria, McDonagh, Francesca, Simpson, Anna C., Parker, Ceth W., Singh, Nitin K., Rekha, Punchappady D., Morris, Dearbháile, Raman, Karthik, Kyrpides, Nikos C., Hugenholtz, Philip and Venkateswaran, Kasthuri (2024). Novel spore-forming species exhibiting intrinsic resistance to third- and fourth-generation cephalosporins and description of Tigheibacillus jepli gen. nov., sp. nov. mBio, 15 (4), e0018124. doi: 10.1128/mbio.00181-24
2024
Journal Article
Judicial Opinion 129
Arahal, David R., Bull, Carolee T., Christensen, Henrik, Chuvochina, Maria, Dedysh, Svetlana N., Fournier, Pierre-Edouard, Konstantinidis, Konstantinos T., Parker, Charles T., Ventosa, Antonio, Young, Peter and Göker, Markus (2024). Judicial Opinion 129. International Journal of Systematic and Evolutionary Microbiology, 74 (2) ARTN 006064. doi: 10.1099/ijsem.0.006064
2024
Journal Article
Why and how to use the SeqCode
Whitman, William B., Chuvochina, Maria, Hedlund, Brian P., Konstantinidis, Konstantinos T., Palmer, Marike, Rodriguez‐R, Luis M., Sutcliffe, Iain and Wang, Fengping (2024). Why and how to use the SeqCode. mLife, 3 (1), 1-13. doi: 10.1002/mlf2.12092
2024
Journal Article
Andean soil-derived lignocellulolytic bacterial consortium as a source of novel taxa and putative plastic-active enzymes
Díaz-García, Laura, Chuvochina, Maria, Feuerriegel, Golo, Bunk, Boyke, Spröer, Cathrin, Streit, Wolfgang R., Rodriguez-R, Luis M., Overmann, Jörg and Javier Jiménez, Diego (2024). Andean soil-derived lignocellulolytic bacterial consortium as a source of novel taxa and putative plastic-active enzymes. Systematic and Applied Microbiology, 47 (1) 126485, 1-13. doi: 10.1016/j.syapm.2023.126485
2023
Journal Article
Request for public discussion and ballot to amend SeqCode rules on priority of Candidatus names and correction of typographic and orthographic errors
Whitman, William B., Hedlund, Brian P., Palmer, Marike, Sutcliffe, Iain and Chuvochina, Maria (2023). Request for public discussion and ballot to amend SeqCode rules on priority of Candidatus names and correction of typographic and orthographic errors. ISME Communications, 3 (1) 96. doi: 10.1038/s43705-023-00303-y
2023
Journal Article
A long-awaited taxogenomic investigation of the family Halomonadaceae
de la Haba, Rafael R., Arahal, David R., Sánchez-Porro, Cristina, Chuvochina, Maria, Wittouck, Stijn, Hugenholtz, Philip and Ventosa, Antonio (2023). A long-awaited taxogenomic investigation of the family Halomonadaceae. Frontiers in Microbiology, 14 1293707, 1-28. doi: 10.3389/fmicb.2023.1293707
2023
Journal Article
Genome Taxonomy Database and SeqCode: Microbial taxonomy and nomenclature in the age of big sequence data
Chuvochina, Maria, Rinke, Christian, Mussig, Aaron, Chaumeil, Pierre-Alain, Parks, Donovan and Hugenholtz, Philip (2023). Genome Taxonomy Database and SeqCode: Microbial taxonomy and nomenclature in the age of big sequence data. Biodiversity Information Science and Standards, 7. doi: 10.3897/biss.7.111135
2023
Journal Article
Proposal of names for 329 higher rank taxa defined in the Genome Taxonomy Database under two prokaryotic codes
Chuvochina, Maria, Mussig, Aaron J., Chaumeil, Pierre-Alain, Skarshewski, Adam, Rinke, Christian, Parks, Donovan H. and Hugenholtz, Philip (2023). Proposal of names for 329 higher rank taxa defined in the Genome Taxonomy Database under two prokaryotic codes. FEMS Microbiology Letters, 370 fnad071, 1-33. doi: 10.1093/femsle/fnad071
2023
Journal Article
Naming genera after geographical locations. Proposal to emend Appendix 9 of the International Code of Nomenclature of Prokaryotes
Oren, Aharon and Chuvochina, Maria (2023). Naming genera after geographical locations. Proposal to emend Appendix 9 of the International Code of Nomenclature of Prokaryotes. International Journal of Systematic and Evolutionary Microbiology, 73 (5) 005873, 1-3. doi: 10.1099/ijsem.0.005873
2023
Journal Article
Hyperactive nanobacteria with host-dependent traits pervade Omnitrophota
Seymour, Cale O., Palmer, Marike, Becraft, Eric D., Stepanauskas, Ramunas, Friel, Ariel D., Schulz, Frederik, Woyke, Tanja, Eloe-Fadrosh, Emiley, Lai, Dengxun, Jiao, Jian-Yu, Hua, Zheng-Shuang, Liu, Lan, Lian, Zheng-Han, Li, Wen-Jun, Chuvochina, Maria, Finley, Brianna K., Koch, Benjamin J., Schwartz, Egbert, Dijkstra, Paul, Moser, Duane P., Hungate, Bruce A. and Hedlund, Brian P. (2023). Hyperactive nanobacteria with host-dependent traits pervade Omnitrophota. Nature Microbiology, 8 (4), 727-744. doi: 10.1038/s41564-022-01319-1
2023
Journal Article
Judicial Opinion 128
Arahal, David R., Bull, Carolee T., Christensen, Henrik, Chuvochina, Maria, Dedysh, Svetlana N., Fournier, Pierre-Edouard, Konstantinidis, Konstantinos T., Parker, Charles T., Rossello-Mora, Ramon, Ventosa, Antonio and Göker, Markus (2023). Judicial Opinion 128. International Journal of Systematic and Evolutionary Microbiology, 73 (3) 005797, 1-7. doi: 10.1099/ijsem.0.005797
2023
Journal Article
Guidelines for interpreting the International Code of Nomenclature of Prokaryotes and for preparing a Request for an Opinion
Arahal, David R., Bull, Carolee T., Busse, Hans-Jürgen, Christensen, Henrik, Chuvochina, Maria, Dedysh, Svetlana N., Fournier, Pierre-Edouard, Konstantinidis, Konstantinos T., Parker, Charles T., Rossello-Mora, Ramon, Ventosa, Antonio and Göker, Markus (2023). Guidelines for interpreting the International Code of Nomenclature of Prokaryotes and for preparing a Request for an Opinion. International Journal of Systematic and Evolutionary Microbiology, 73 (3) 005782, 1-20. doi: 10.1099/ijsem.0.005782
2022
Journal Article
SeqCode: a nomenclatural code for prokaryotes described from sequence data
Hedlund, Brian P., Chuvochina, Maria, Hugenholtz, Philip, Konstantinidis, Konstantinos T., Murray, Alison E., Palmer, Marike, Parks, Donovan H., Probst, Alexander J., Reysenbach, Anna-Louise, Rodriguez-R, Luis M., Rossello-Mora, Ramon, Sutcliffe, Iain C., Venter, Stephanus N. and Whitman, William B. (2022). SeqCode: a nomenclatural code for prokaryotes described from sequence data. Nature Microbiology, 7 (10), 1702-1708. doi: 10.1038/s41564-022-01214-9
2022
Journal Article
Development of the SeqCode: A proposed nomenclatural code for uncultivated prokaryotes with DNA sequences as type
Whitman, William B., Chuvochina, Maria, Hedlund, Brian P., Hugenholtz, Philip, Konstantinidis, Konstantinos T., Murray, Alison E., Palmer, Marike, Parks, Donovan H., Probst, Alexander J., Reysenbach, Anna-Louise, Rodriguez-R, Luis M., Rossello-Mora, Ramon, Sutcliffe, Iain and Venter, Stephanus N. (2022). Development of the SeqCode: A proposed nomenclatural code for uncultivated prokaryotes with DNA sequences as type. Systematic and Applied Microbiology, 45 (5) 126305, 1-8. doi: 10.1016/j.syapm.2022.126305
2022
Journal Article
Judicial Opinions 103–111
Arahal, David R., Busse, Hans-Jürgen, Bull, Carolee T., Christensen, Henrik, Chuvochina, Maria, Dedysh, Svetlana N., Fournier, Pierre-Edouard, Konstantinidis, Konstantinos T., Parker, Charles T., Rosselló-Móra, Ramon, Ventosa, Antonio and Göker, Markus (2022). Judicial Opinions 103–111. International Journal of Systematic and Evolutionary Microbiology, 72 (1) 005197. doi: 10.1099/ijsem.0.005197
Supervision
Availability
- Dr Maria Chuvochina is:
- Available for supervision
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