Dr. Bialasiewicz worked at the Royal Children's Hospital and the Children's Health Queensland HHS for over 18 years conducting translational research and clinical support centering on infectious disease (primarily viral and bacterial) molecular diagnostics, general microbiology and molecular epidemiology. In 2019, he became a group leader at The University of Queensland's Australian Centre for Ecogenomics, expanding on a growing interest in the microbial ecology of the human body, it's role in health and disease, and ways to manipulated to achieve desirable outcomes. One Health microbial ecology, where human health is interconnected with the health of animals (both livestock and wildlife), and the broader environment is also an area of active interest. His background in virology has influenced the work he does, meaning a key focus of his microbial ecology works centres around the interactions between all types of microorgansims (bacteria, archaea, viruses, fungi, and micro-eukaryotes).
Ongoing work includes:
- Leveraging of emerging technologies to explore the hidden microbial diversity and their interactions in the human body.
- Using the technology to develop microbial (e.g. phage)-based treatments or preventatives to complex diseases (e.g. Otitis Media, Chronic Rhinosinusitis, GvHD).
- Understanding the genetics of antibiotic resistance spread.
Affiliate Associate Professor of School of Agriculture and Food Sustainability
School of Agriculture and Food Sustainability
Faculty of Science
Associate Professor in Env Science
School of the Environment
Faculty of Science
Availability:
Available for supervision
Paul Dennis leads an exciting research group that applies cutting-edge technologies to understand the roles of microorganisms and their responses to environmental change.
He is also a passionate educator and public speaker who advocates for the importance of biological diversity and evidence-based environmental awareness. He has talked about his research on ABC Radio and a range of other media outlets.
His teaching covers aspects of ecology, microbiology, plant and soil science, and climatology. He considers these topics to be of fundamental importance for the development of more sustainable societies and takes pride in helping others to obtain the knowledge and skills they need to build a better future.
Paul's research has taken him to Antarctica, the Amazon Rainforest, high mountains and oceans. The approaches used in his lab draw on a wide range of expertise in molecular biology, ecology, statistics, computer science, advanced imaging and soil science. He applies these skills to a wide-range of topics and systems including plant-microbe interactions, Antarctic marine and terrestrial ecology, biogeography, pollution and human health.
Dr. Vilim Filipović’s area of interest are in environmental soil science and ecohydrology with expertise in soil physical processes, vadose zone hydrology, contaminant/nutrient transport, and numerical modelling. His research explores the complex interactions between soil, water, and contaminants/nutrients, with applications in environmental sustainability, agricultural resilience, and mine rehabilitation. By integrating long-term field monitoring, experimental research, and computational modelling, his work assesses environmental pressures and evaluates management strategies for soil and water resources.
Dr. Filipović obtained his PhD in Environmental Soil Science and Hydrology from the University of Zagreb, Croatia. He has held academic and research positions in Europe and Australia, and still currently holds an Adjunct Associate Professor position at the University of Zagreb. In 2022, he joined The University of Queensland, where he contributes to research and teaching in environmental soil science, vadose zone ecohydrology, and numerical modelling.
With an extensive international network, Dr. Filipović has led numerous national and international research projects on soil-plant-atmosphere interactions, preferential flow, and contaminant fate in soil systems. His research collaborations span institutions in Australia, Europe, and North America, and he has been a visiting scholar at CSIRO (Australia), SLU (Sweden), Penn State University, University of California, University of Florida (USA), BOKU (Austria), and ZALF (Germany), among others.
At UQ, Dr. Filipović plays an active role in undergraduate and postgraduate education, employing a research-led teaching approach in environmental soil science. He coordinates and lectures in key courses, including LAND2003, AGRC7053, LAND3005, and GEOS1100, emphasizing hands-on field and laboratory experiences, active learning methodologies, and the integration of cutting-edge research into student learning.
Dr. Filipović is a recognized leader in his field, serving as an Associate Editor for the Soil Science Society of America Journal, Vadose Zone Journal and Applied Soil Ecology. His contributions have been acknowledged with prestigious awards, including the Soil Science Society of America Early Career Award (2019) Visiting Fellowship at the Leibniz Centre for Agricultural Landscape Research (2021) in Germany and CRC TiME Award winner for Outstanding Research Communication award (2024), among other recognitions.
Dr. Filipović has held significant leadership roles, including Head of Department at the University of Zagreb, leadership of a Critical Zone Observatory, panel membership for national science foundations, curriculum development, and various committee positions. His work continues to contribute to advancing soil science research, education, and environmental management on national and international scale.
Research Interests
Environmental sciences and agroecology
Preferential flow and non-equilibrium transport processes in heterogeneous soils
Fate of contaminants in soil (i.e., nutrients, pesticides, trace metals, pharmaceuticals)
Affiliate of Centre for Environmental Responsibility in Mining
Centre for Environmental Responsibility in Mining
Faculty of Engineering, Architecture and Information Technology
Affiliate of Centre for Geoanalytical Mass Spectrometry
Centre for Geoanalytical Mass Spectrometry
Faculty of Science
Professorial Research Fellow
Sustainable Minerals Institute
Faculty of Engineering, Architecture and Information Technology
Availability:
Available for supervision
Media expert
Nature-based rehabilitation science and technology, with a focus on ecological engineering of mine wastes (e.g., AMD-waste rocks, tailings (coal tailings, magnetite tailings, bauxite residues (or red mud), Cu/Pb-Zn tailings)) into earth materials (e.g., soil, engineered rocks) and resilient landforms for cost-effective sustainable rehabilitation at mine waste landscapes.
Professor Huang is a full professor and the group leader of Ecological Engineering in Mining, in the Sustainable Minerals Institute, University of Queensland. Since 2010, Prof Huang has pioneered new concepts and technological framework to manage and rehabilitate mine wastes (e.g., tailings, acidic and metalliferous waste rocks), through putting pedogenesis in engineering nutshell, i.e., eco-engineering of pedogenesis in mine wastes. He is leading an industry-enaged and interdisciplinary research group that is partnered with leading mining companies and empowered by multidisciplinary knowledge and skills on: environmental molecular microbiology, environmental mineralogy, soil science, native plant rhizosphere (micro)biology, soil-plant relations, and bio-chemical engineering of environmental materials (e.g., functional carbon and mineral absorbents, environmental geopolymers).
He is highly experienced in industry-partnered research and translation of knowledge into field-based technologies for tackling large environmental challenges in the mining industry, for example, technologies for tackling global tailings problem. Since 2010, he has led many large and industry-partnered research projects attracting about $21M funding. The research aims to deliver transformative knowledge and practices (i.e., technologies/methdologies) in the rehabilitation of mine wastes (e.g., tailings, mineral residues, spoils, waste rocks) and mined landscapes for non-polluting and ecologically and financially sustainable outcomes. Prof Huang has successfully demonstrated innovative methodology and technology to achieve nature-based outcomes in treating and rehabilitating tailings and waste rocks. Prof Huang’s research program was featured in Rio Tinto’s media releases as one of the four most successful global R&D partnerships in 2024. Prof Huang led the development of the first field-feasible technology to treat and dealkalize alkaline bauxite residues for sustainable rehabilitation. His industry-partnered research was recognised in 2019 UQ’s Partners in Research Excellence Award (Resilient Environments) (Rio Tinto and QAL). Prof Huang is also developing new knowledge and technologies for achieving non-polluting and ecologically sustainable rehabilitation of, for example, coal mine spoils and tailings, Fe-ore tailings, bauxite tailings (from mining bauxite), and Cu/Pb-Zn tailings.
Membership of Board, Committee and Society
Professional associations and societies
2010 – Present Australian Soil Science Society.
2023 – Present AuSIMM
2015 – Present American Society of Mining and Reclamation (ASMR)
Editorial boards/services
2025 - present: Member of Editorial Board, Energy & Environment Nexus
Queensland Alliance for Agriculture and Food Innovation
Availability:
Available for supervision
Dr Vivian Rincon is a microbiologist from Universidad de Los Andes in Colombia . She joined the University of Queensland (UQ) in 2008 as RA to work in projects related to plant-pathogen interactions and soil microbiology. She obtained a scholarship from the Grain Research and Development Corporation (GRDC) to start her PhD on the effect of tillage on soil microbial communities in wheat fields. Following her studies, she joined Queensland Alliance for Agriculture and Food Innovation (QAAFI) at UQ to work on different aspects of disease management in broadacre crops. Currently, she is a research fellow at the Centre for Horticulturals Science (CHS) working on an integrated disease management approach for the Macadamia industry.
Susanne leads a vibrant team researching natural ecosystems and agroecosystems focussed on plants, microbes and soil. This aims to advance the circular nutrient economy, the restoration of degraded soils and landscapes, and the sustainable use of Australia's flora in research that is led by Indigenous experts and communities.
Funded PhD and MPhil positions are available in the (i) Bushfood project and the (ii) Next-generation fertilisers project and soil ameliorants project. Honours and Masters projects are available in all active projects. Please register your interest emailing Susanne.Schmidt@uq.edu.au
Active projects:
Climate smart agriculture: quantifying the benefits of cultural burning in QLD grazing lands (led by Firesticks Alliance, funded by the AustDAF)
A Deadly Solution: Traditional Knowledge and Western Science for an Indigenous-led Bushfood Industry (ARC Discovery-Indigenous)
Affiliate of Julius Kruttschnitt Mineral Research Centre
Julius Kruttschnitt Mineral Research Centre
Faculty of Engineering, Architecture and Information Technology
Postdoctoral Research Fellow
Julius Kruttschnitt Mineral Research Centre
Faculty of Engineering, Architecture and Information Technology
Availability:
Available for supervision
Dr Qi Shao is a Postdoctoral Research Fellow at the Julius Kruttschnitt Mineral Research Centre (JKMRC), where his primary research focus is on modelling mineral separation processes using Computational Fluid Dynamics (CFD) simulations. His recent work has applied CFD to a range of mineral separation equipment, including the Teeter Bed Separator, CrossFlow, HydroFloat, conventional mechanical flotation cells, and the Jameson Cell. By examining hydrodynamics and performance across varying operating conditions and equipment designs, his research aims to enhance separation efficiency, reduce energy consumption, and boost productivity.
Dr Shao earned his PhD in Environmental Engineering from The University of Queensland, where he developed numerical models using Cellular Automata to simulate hydrological processes in mining landforms. Following his PhD, he continued at UQ as a Postdoctoral Research Fellow, investigating fluid-particle interactions in hydraulic erosion of granular structures through coupled CFD and Discrete Element Method (DEM) simulations.
Prior to his current role, Dr Shao conducted research at the University of Melbourne, focusing on numerical simulations of solute transport and multiphase flows in heterogeneous porous media. His work addressed critical environmental and engineering challenges, including contaminant transport, geological CO₂ sequestration, and groundwater flow dynamics.
Dr Shao’s expertise spans a wide array of numerical methods, including Finite Element Method (FEM), Finite Volume Method (FVM), DEM, Cellular Automata, and Discrete Event Simulation, which he applies to solve complex problems across environmental and mineral engineering domains.
Affiliate of Centre for Environmental Responsibility in Mining
Centre for Environmental Responsibility in Mining
Faculty of Engineering, Architecture and Information Technology
Research Fellow
Sustainable Minerals Institute
Faculty of Engineering, Architecture and Information Technology
Availability:
Available for supervision
Dr. Shaygan is a soil scientist who works on multidisciplinary projects. She obtained both her BSc and MSc degrees in Agronomy from the University of Tehran, followed by a Master of Environmental Management from the University of Queensland. Dr. Shaygan completed her PhD in Soil Science at the University of Queensland. Prior to joining SMI in 2017, she worked with the NSW Department of Primary Industries.
Dr. Shaygan's research focuses on the rehabilitation of degraded landscapes and mine sites, mine cover design, quantification and modelling of water flow, solute and nutrient transport in porous media, soil erosion, characterization of soil hydrological and mechanical properties, and soil salinity management. In addition, she investigates the integration of biofuel crops into mine closure strategies, with a particular focus on the use of Pongamia trees for land rehabilitation, carbon sequestration, and biofuel production.
Her research interests include but are not limited to: (i) salinity management, (ii) land rehabilitation, (iii) water flow and solute/nutrient transport in porous media, (iv) erosion processes, (v) Pongamia tree growth and responses to different environmental conditions, and (vi) soil hydrological modelling.
Since joining SMI, Dr. Shaygan has secured over $3.8 million in grant funding, including more than $1 million as Lead Chief Investigator (Lead CI). Her research projects have been supported by the mining industry (e.g., Stanmore Resources and Anglo American), the Queensland Government, and the Australian Coal Association Research Program (ACARP).
My research focusses on soil health in cropping and pasture systems, specialising in soil carbon and soil organic matter dynamics, microbial ecology, and plant-soil interactions. I am interested in how agronomic interventions impact soil health and in developing methods to reverse soil fertility decline and build healthier, more productive soils. This includes understanding the impacts of tillage, cover cropping, crop rotational diversity, nutrient management, and organic amendments on soil functional processes and crop development and productivity.
I have extensive experience in designing and analyzing field and glasshouse experiments and implementing advanced statistical models using R. I have excellent verbal and written communication skills, maintain positive relationships with collaborators both nationally and internationally, and publish manuscripts in peer-reviewed scientific journals.
The aim of Allie's research is to improve soil health for sustainable agricultural production and environmental protection. Her research spans the areas of plant-soil-microbe interactions, soil microbiology, nutrients cycling and the recylcing of organic wastes, currently focusing on (i) the development of advanced and novel methodologies for investigation of plant-soil-microbe interactions; (ii) dynamics of nutrients (N, P, K) and carbon in soils including greenhouse gas emissions; and (iii) soil carbon sequestration and persistence.
