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Dr Mohammed Shaker
Dr

Mohammed Shaker

Email: 
Phone: 
+61 7 334 63894

Overview

Background

Dr. Shaker is an accomplished neuroscientist who earned his PhD in 2017 from Korea University in Seoul, South Korea. His doctoral research focused on the cellular behavior of embryonic neural stem cells during brain and spinal cord development, as well as axial elongation. Dr. Shaker was awarded the prestigious Brain Korea 21 Plus Fellowship from Korea University Medical School, which set the stage for his subsequent role at AIBN-UQ. There, he joined Professor Ernst Wolvetang's laboratory as a Postdoctoral Research Fellow in Organoid Biology, continuing his pioneering research into the human central nervous system in health and disease using cutting-edge organoid technology.

Dr. Shaker has made several groundbreaking contributions to the field, including:

1. Generation of White Matter-like Tissues in Organoids: Dr. Shaker developed a robust and rapid protocol that produces white matter-like tissues enriched with myelinating oligodendrocytes, neurons, and astrocytes within 42 days. This protocol, detailed in publications such as Frontiers in Cellular Neuroscience (2021) and STAR PROTOCOLS (2023), involves the exposure of neuroectoderm-derived organoids to a cocktail of growth factors and small molecules that promote oligodendrocyte specification and survival. His work also led to the discovery of NELL2 expression in human oligodendroglial cell types and its linkage to human white matter development and diseases, as highlighted in Frontiers in Cell and Developmental Biology (2022).

2. Human Cortical Organoid Senescence: Dr. Shaker demonstrated that human cortical organoids exhibit typical hallmarks of senescent cells when maintained in vitro for extended periods. He also found that moderate upregulation of endogenous KL expression in cortical organoids inhibits neuronal senescence, providing new mechanistic insights into human brain aging. This significant finding was published in NPJ Aging and Mechanisms of Disease (2021).

3. Down Syndrome Modelling with Organoids: Dr. Shaker successfully modeled Down Syndrome using patient and isogenic human iPSCs lines with Choroid Plexus-Ventricle-Cortical organoids. This model, published in Science Advances (2024), is instrumental for dissecting the role of the choroid plexus in euploid and Down Syndrome forebrain development and enables screening for therapeutics to inhibit SARS-CoV-2 induced neuro-pathogenesis.

Currently, Dr. Shaker is leading two major research projects:

1. Leukodystrophy Modeling: Using reprogrammed patient iPSCs lines to create oligodendrocyte brain organoids, Dr. Shaker is advancing the understanding and potential treatments for leukodystrophies.

2. Neural Tube Elongation Defects: This project uses spinal cord organoids combined with advanced transcriptomics techniques to study the cellular processes driving neural tube elongation. The goal is to gain insights into the causes of neural tube defects, improving our understanding of how cells arrange into a continuously elongating neural tube.

Dr. Shaker’s innovative work continues to push the boundaries of neuroscience, providing valuable insights into the development and diseases of the human central nervous system

Availability

Dr Mohammed Shaker is:
Available for supervision

Qualifications

  • Bachelor of Biomedical Science, University of Malaya
  • Masters (Coursework), University of Malaya
  • Doctor of Philosophy, Korea University

Research interests

  • Neurogenesis

  • Myelination

  • Organoids

  • Neural tube

  • Mitochondria

Research impacts

Research Impact

Knowledge Impact Despite decades of animal research aimed at developing treatments for white matter diseases, most interventions that showed preclinical success failed in humans. Our research program aimed to uncover the cellular and molecular mechanisms controlling stem cell behavior, leading to the development of novel platforms for creating complex human central nervous system (CNS) tissues in vitro. These advancements have facilitated a paradigm shift in CNS development and stem cell research.

We pioneered new technologies and methods, such as:

  1. Illustrating the lineage and cellular properties of axial stem cells.
  2. Generating complex human brain and spinal cord tissues that accurately replicate human systems.
  3. Introducing innovative tools to create human white matter-like tissues in vitro.

Technological and Interdisciplinary Advancements Our research has significantly advanced multiple disciplines, including neuroscience, medicine, and technology. Key achievements include:

  1. Rapid production of mature oligodendrocytes in brain organoids, now used globally for modeling white matter diseases and drug screening.
  2. Creation of the first in vitro model of human brain aging and neuronal senescence.
  3. Discovery of the role of NELL2 in human oligodendrocytes, revealing new insights into white matter diseases with the aid of machine learning.

Before our research program, generating reliable human CNS tissues that accurately mimicked in vivo conditions was a challenge. Our early studies (2014-2018) on axial stem cells led to novel in vitro techniques, uncovering new progenitor cells (neuromesodermal progenitors) that form the spinal cord and caudal hindbrain. This work has driven interest in generating human spinal cord tissues for drug screening against neural tube defects.

From 2018-2022, we developed platforms to model different CNS domains using organoids, optimizing conditions to generate white matter-like tissues for drug screening. Our discovery of the anti-aging protein Klotho's role in inhibiting neuronal senescence and the creation of forebrain-like tissues with choroid plexus for modeling SARS-CoV-2 neuropathology in Down syndrome significantly advance disease modeling in vitro.

Recent work identified NELL2 in oligodendroglia, associated with white matter diseases like leukodystrophy. We have established national and international collaborations for further research and drug screening.

My efforts have been recognized with several awards, including the Early Career Researcher Fellowship from the Children’s Hospital Foundation and the European Leukodystrophy International Association Grant. I have presented my work at prestigious conferences and received multiple awards.

Works

Search Professor Mohammed Shaker’s works on UQ eSpace

36 works between 2013 and 2024

1 - 20 of 36 works

2024

Journal Article

Valproic acid-induced teratogenicity is driven by senescence and prevented by Rapamycin in human spinal cord and animal models

Pietrogrande, Giovanni, Shaker, Mohammed R., Stednitz, Sarah J., Soheilmoghaddam, Farhad, Aguado, Julio, Morrison, Sean D., Zambrano, Samuel, Tabassum, Tahmina, Javed, Ibrahim, Cooper-White, Justin, Davis, Thomas P., O’Brien, Terence J., Scott, Ethan K. and Wolvetang, Ernst J. (2024). Valproic acid-induced teratogenicity is driven by senescence and prevented by Rapamycin in human spinal cord and animal models. Molecular Psychiatry, 1-13. doi: 10.1038/s41380-024-02732-0

Valproic acid-induced teratogenicity is driven by senescence and prevented by Rapamycin in human spinal cord and animal models

2024

Journal Article

Choroid plexus defects in Down syndrome brain organoids enhance neurotropism of SARS-CoV-2

Shaker, Mohammed R., Slonchak, Andrii, Al-Mhanawi, Bahaa, Morrison, Sean D., Sng, Julian D.J., Cooper-White, Justin, Khromykh, Alexander A. and Wolvetang, Ernst J. (2024). Choroid plexus defects in Down syndrome brain organoids enhance neurotropism of SARS-CoV-2. Science Advances, 10 (23) eadj4735, 1-23. doi: 10.1126/sciadv.adj4735

Choroid plexus defects in Down syndrome brain organoids enhance neurotropism of SARS-CoV-2

2024

Journal Article

A roadmap for selecting and utilizing optimal features in scRNA sequencing data analysis for stem cell research: a comprehensive review

Alani, Maath, Altarturih, Hamza, Pars, Selin, Al-Mhanawi, Bahaa, Wolvetang, Ernst J. and Shaker, Mohammed R. (2024). A roadmap for selecting and utilizing optimal features in scRNA sequencing data analysis for stem cell research: a comprehensive review. International Journal of Stem Cells, 1-16. doi: 10.15283/ijsc23170

A roadmap for selecting and utilizing optimal features in scRNA sequencing data analysis for stem cell research: a comprehensive review

2023

Journal Article

Protocol for generating embedding-free brain organoids enriched with oligodendrocytes

Al-mhanawi, Bahaa, Marti, Marta Boira, Morrison, Sean D., Gupta, Pallavi, Alani, Maath, Noakes, Peter G., Wolvetang, Ernst J. and Shaker, Mohammed R. (2023). Protocol for generating embedding-free brain organoids enriched with oligodendrocytes. STAR Protocols, 4 (4) 102725, 1-18. doi: 10.1016/j.xpro.2023.102725

Protocol for generating embedding-free brain organoids enriched with oligodendrocytes

2023

Journal Article

Transcriptional signature of valproic acid-induced neural tube defects in human spinal cord organoids

Lee, Ju-Hyun, Shaker, Mohammed R., Park, Si-Hyung and Sun, Woong (2023). Transcriptional signature of valproic acid-induced neural tube defects in human spinal cord organoids. International Journal of Stem Cells, 16 (4), 385-393. doi: 10.15283/ijsc23012

Transcriptional signature of valproic acid-induced neural tube defects in human spinal cord organoids

2023

Conference Publication

Chemogenetic modulation of human in vitro motoneuron development accelerates maturation trajectory and electrophysical properties

Morrison, Sean, Shaker, Mohammed, Pietrogrande, Giovanni, Wolvetang, Ernst and Noakes, Peter (2023). Chemogenetic modulation of human in vitro motoneuron development accelerates maturation trajectory and electrophysical properties. ISN‐ESN 2023 Meeting, Porto, Portugal, 8‐11 August 2023. Chichester, West Sussex, United Kingdom: Wiley-Blackwell.

Chemogenetic modulation of human in vitro motoneuron development accelerates maturation trajectory and electrophysical properties

2023

Journal Article

Choroid plexus defects in Down syndrome brain organoids enhance neurotropism of SARS-CoV-2

Shaker, Mohammed R., Slonchak, Andrii, Al-mhanawi, Bahaa, Morrison, Sean D., Sng, Julian D. J., Cooper-White, Justin, Khromykh, Alexander A. and Wolvetang, Ernst J. (2023). Choroid plexus defects in Down syndrome brain organoids enhance neurotropism of SARS-CoV-2. bioRxiv, 10 (23) eadj4735, eadj4735. doi: 10.1101/2023.06.12.544552

Choroid plexus defects in Down syndrome brain organoids enhance neurotropism of SARS-CoV-2

2022

Journal Article

Robust and highly reproducible generation of cortical brain organoids for modelling brain neuronal senescence in vitro

Shaker, Mohammed R., Hunter, Zoe L. and Wolvetang, Ernst J. (2022). Robust and highly reproducible generation of cortical brain organoids for modelling brain neuronal senescence in vitro. Journal of Visualized Experiments, 2022 (183) e63714. doi: 10.3791/63714

Robust and highly reproducible generation of cortical brain organoids for modelling brain neuronal senescence in vitro

2022

Journal Article

Human induced pluripotent stem cells generated from epilepsy patients for use as in vitro models for drug screening

Hunter, Zoe L., Leeson, Hannah C., Shaker, Mohammed R., Wolvetang, Ernst J. and Vadlamudi, Lata (2022). Human induced pluripotent stem cells generated from epilepsy patients for use as in vitro models for drug screening. Stem Cell Research, 60 102673, 102673. doi: 10.1016/j.scr.2022.102673

Human induced pluripotent stem cells generated from epilepsy patients for use as in vitro models for drug screening

2022

Journal Article

Production of human spinal-cord organoids recapitulating neural-tube morphogenesis

Lee, Ju-Hyun, Shin, Hyogeun, Shaker, Mohammed R., Kim, Hyun Jung, Park, Si-Hyung, Kim, June Hoan, Lee, Namwon, Kang, Minjin, Cho, Subin, Kwak, Tae Hwan, Kim, Jong Woon, Song, Mi-Ryoung, Kwon, Seung-Hae, Han, Dong Wook, Lee, Sanghyuk, Choi, Se-Young, Rhyu, Im Joo, Kim, Hyun, Geum, Dongho, Cho, Il-Joo and Sun, Woong (2022). Production of human spinal-cord organoids recapitulating neural-tube morphogenesis. Nature Biomedical Engineering, 6 (4), 435-448. doi: 10.1038/s41551-022-00868-4

Production of human spinal-cord organoids recapitulating neural-tube morphogenesis

2022

Journal Article

Neural epidermal growth factor-like like protein 2 is expressed in human oligodendroglial cell types

Shaker, Mohammed R., Kahtan, Amna, Prasad, Renuka, Lee, Ju-Hyun, Pietrogrande, Giovanni, Leeson, Hannah C., Sun, Woong, Wolvetang, Ernst J. and Slonchak, Andrii (2022). Neural epidermal growth factor-like like protein 2 is expressed in human oligodendroglial cell types. Frontiers in Cell and Developmental Biology, 10 803061, 803061. doi: 10.3389/fcell.2022.803061

Neural epidermal growth factor-like like protein 2 is expressed in human oligodendroglial cell types

2021

Journal Article

Hypermethylation of Mest promoter causes aberrant Wnt signaling in patients with Alzheimer's disease

Prasad, Renuka, Jung, Hwajin, Tan, Anderson, Song, Yonghee, Moon, Sungho, Shaker, Mohammed R., Sun, Woong, Lee, Junghee, Ryu, Hoon, Lim, Hyun Kook and Jho, Eek-hoon (2021). Hypermethylation of Mest promoter causes aberrant Wnt signaling in patients with Alzheimer's disease. Scientific Reports, 11 (1) 20075, 20075. doi: 10.1038/s41598-021-99562-9

Hypermethylation of Mest promoter causes aberrant Wnt signaling in patients with Alzheimer's disease

2021

Journal Article

Spatiotemporal contribution of neuromesodermal progenitor-derived neural cells in the elongation of developing mouse spinal cord

Shaker, Mohammed R., Lee, Ju-Hyun, Kim, Kyung Hyun, Ban, Saeli, Kim, Veronica Jihyun, Kim, Joo Yeon, Lee, Ji Yeoun and Sun, Woong (2021). Spatiotemporal contribution of neuromesodermal progenitor-derived neural cells in the elongation of developing mouse spinal cord. Life Sciences, 282 119393, 1-11. doi: 10.1016/j.lfs.2021.119393

Spatiotemporal contribution of neuromesodermal progenitor-derived neural cells in the elongation of developing mouse spinal cord

2021

Journal Article

Generation of induced pluripotent stem cell lines from peripheral blood mononuclear cells of three drug resistant and three drug responsive epilepsy patients

Hunter, Zoe L., Leeson, Hannah C., Shaker, Mohammed R., Wolvetang, Ernst J. and Vadlamudi, Lata (2021). Generation of induced pluripotent stem cell lines from peripheral blood mononuclear cells of three drug resistant and three drug responsive epilepsy patients. Stem Cell Research, 56 102564, 102564. doi: 10.1016/j.scr.2021.102564

Generation of induced pluripotent stem cell lines from peripheral blood mononuclear cells of three drug resistant and three drug responsive epilepsy patients

2021

Journal Article

Inhibition of the cGAS‐STING pathway ameliorates the premature senescence hallmarks of Ataxia‐Telangiectasia brain organoids

Aguado, Julio, Chaggar, Harman K., Gómez‐Inclán, Cecilia, Shaker, Mohammed R., Leeson, Hannah C., Mackay‐Sim, Alan and Wolvetang, Ernst J. (2021). Inhibition of the cGAS‐STING pathway ameliorates the premature senescence hallmarks of Ataxia‐Telangiectasia brain organoids. Aging Cell, 20 (9) e13468, 1-16. doi: 10.1111/acel.13468

Inhibition of the cGAS‐STING pathway ameliorates the premature senescence hallmarks of Ataxia‐Telangiectasia brain organoids

2021

Journal Article

Klotho inhibits neuronal senescence in human brain organoids

Shaker, Mohammed R., Aguado, Julio, Chaggar, Harman Kaur and Wolvetang, Ernst J. (2021). Klotho inhibits neuronal senescence in human brain organoids. npj Aging and Mechanisms of Disease, 7 (1) 18, 1-12. doi: 10.1038/s41514-021-00070-x

Klotho inhibits neuronal senescence in human brain organoids

2021

Journal Article

Embryonal neuromesodermal progenitors for caudal central nervous system and tissue development

Shaker, Mohammed R., Lee, Ju-Hyun and Sun, Woong (2021). Embryonal neuromesodermal progenitors for caudal central nervous system and tissue development. Journal of Korean Neurosurgical Society, 64 (3), 359-366. doi: 10.3340/jkns.2020.0359

Embryonal neuromesodermal progenitors for caudal central nervous system and tissue development

2021

Journal Article

Rapid and efficient generation of myelinating human oligodendrocytes in organoids

Shaker, Mohammed R., Pietrogrande, Giovanni, Martin, Sally, Lee, Ju-Hyun, Woong, Sun and Wolvetang, Ernst J. (2021). Rapid and efficient generation of myelinating human oligodendrocytes in organoids. Frontiers in Cellular Neuroscience, 15 631548, 1-11. doi: 10.3389/fncel.2021.631548

Rapid and efficient generation of myelinating human oligodendrocytes in organoids

2020

Journal Article

Human spinal cord organoids exhibiting neural tube morphogenesis for a quantifiable drug screening system of neural tube defects

Lee, Ju-Hyun, Shin, Hyogeun, Shaker, Mohammed R., Kim, Hyun Jung, Kim, June Hoan, Lee, Namwon, Kang, Minjin, Cho, Subin, Kwak, Tae Hwan and Sun, Woong (2020). Human spinal cord organoids exhibiting neural tube morphogenesis for a quantifiable drug screening system of neural tube defects.

Human spinal cord organoids exhibiting neural tube morphogenesis for a quantifiable drug screening system of neural tube defects

2020

Journal Article

Anteroposterior Wnt-RA gradient defines adhesion and migration properties of neural progenitors in developing spinal cord

Shaker, Mohammed R., Lee, Ju-Hyun, Park, Si-Hyung, Kim, Joo Yeon, Son, Gi Hoon, Son, Jong Wan, Park, Bae Ho, Rhyu, Im Joo, Kim, Hyun and Sun, Woong (2020). Anteroposterior Wnt-RA gradient defines adhesion and migration properties of neural progenitors in developing spinal cord. Stem Cell Reports, 15 (4), 898-911. doi: 10.1016/j.stemcr.2020.08.016

Anteroposterior Wnt-RA gradient defines adhesion and migration properties of neural progenitors in developing spinal cord

Funding

Past funding

  • 2022 - 2024
    The oligodendrocyte brain organoid models children with leukodystrophy and enables drug screening
    Preclinical and Clinical Early Career Research
    Open grant
  • 2022 - 2024
    Deciphering disease heterogeneity: Spatiotemporal analysis of molecular and cellular pathology in HBSL
    ELA International
    Open grant
  • 2021 - 2022
    MND in space and time: deciphering the spatio-temporal landscape of cell-autonomous and non-cell-autonomous drivers of motor neuron death in MND
    Motor Neurone Disease Research Institute of Australia Inc
    Open grant
  • 2021 - 2024
    Transforming the paradigm of epilepsy care with precision medicine
    NHMRC MRFF Stem Cells Therapies Mission
    Open grant

Supervision

Availability

Dr Mohammed Shaker is:
Available for supervision

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Supervision history

Current supervision

Media

Enquiries

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