Overview
Background
Dr. Shaker is an accomplished neuroscientist who earned his PhD in 2017 from Korea University in Seoul, South Korea. His doctoral research focused on the cellular behavior of embryonic neural stem cells during brain and spinal cord development, as well as axial elongation. Dr. Shaker was awarded the prestigious Brain Korea 21 Plus Fellowship from Korea University Medical School, which set the stage for his subsequent role at AIBN-UQ. There, he joined Professor Ernst Wolvetang's laboratory as a Postdoctoral Research Fellow in Organoid Biology, continuing his pioneering research into the human central nervous system in health and disease using cutting-edge organoid technology.
Dr. Shaker has made several groundbreaking contributions to the field, including:
1. Generation of White Matter-like Tissues in Organoids: Dr. Shaker developed a robust and rapid protocol that produces white matter-like tissues enriched with myelinating oligodendrocytes, neurons, and astrocytes within 42 days. This protocol, detailed in publications such as Frontiers in Cellular Neuroscience (2021) and STAR PROTOCOLS (2023), involves the exposure of neuroectoderm-derived organoids to a cocktail of growth factors and small molecules that promote oligodendrocyte specification and survival. His work also led to the discovery of NELL2 expression in human oligodendroglial cell types and its linkage to human white matter development and diseases, as highlighted in Frontiers in Cell and Developmental Biology (2022).
2. Human Cortical Organoid Senescence: Dr. Shaker demonstrated that human cortical organoids exhibit typical hallmarks of senescent cells when maintained in vitro for extended periods. He also found that moderate upregulation of endogenous KL expression in cortical organoids inhibits neuronal senescence, providing new mechanistic insights into human brain aging. This significant finding was published in NPJ Aging and Mechanisms of Disease (2021).
3. Down Syndrome Modelling with Organoids: Dr. Shaker successfully modeled Down Syndrome using patient and isogenic human iPSCs lines with Choroid Plexus-Ventricle-Cortical organoids. This model, published in Science Advances (2024), is instrumental for dissecting the role of the choroid plexus in euploid and Down Syndrome forebrain development and enables screening for therapeutics to inhibit SARS-CoV-2 induced neuro-pathogenesis.
Currently, Dr. Shaker is leading two major research projects:
1. Leukodystrophy Modeling: Using reprogrammed patient iPSCs lines to create oligodendrocyte brain organoids, Dr. Shaker is advancing the understanding and potential treatments for leukodystrophies.
2. Neural Tube Elongation Defects: This project uses spinal cord organoids combined with advanced transcriptomics techniques to study the cellular processes driving neural tube elongation. The goal is to gain insights into the causes of neural tube defects, improving our understanding of how cells arrange into a continuously elongating neural tube.
Dr. Shaker’s innovative work continues to push the boundaries of neuroscience, providing valuable insights into the development and diseases of the human central nervous system
Availability
- Dr Mohammed Shaker is:
- Available for supervision
Fields of research
Qualifications
- Bachelor of Biomedical Science, University of Malaya
- Masters (Coursework), University of Malaya
- Doctor of Philosophy, Korea University
Research interests
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Neurogenesis
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Myelination
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Organoids
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Neural tube
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Mitochondria
Research impacts
Research Impact
Knowledge Impact Despite decades of animal research aimed at developing treatments for white matter diseases, most interventions that showed preclinical success failed in humans. Our research program aimed to uncover the cellular and molecular mechanisms controlling stem cell behavior, leading to the development of novel platforms for creating complex human central nervous system (CNS) tissues in vitro. These advancements have facilitated a paradigm shift in CNS development and stem cell research.
We pioneered new technologies and methods, such as:
- Illustrating the lineage and cellular properties of axial stem cells.
- Generating complex human brain and spinal cord tissues that accurately replicate human systems.
- Introducing innovative tools to create human white matter-like tissues in vitro.
Technological and Interdisciplinary Advancements Our research has significantly advanced multiple disciplines, including neuroscience, medicine, and technology. Key achievements include:
- Rapid production of mature oligodendrocytes in brain organoids, now used globally for modeling white matter diseases and drug screening.
- Creation of the first in vitro model of human brain aging and neuronal senescence.
- Discovery of the role of NELL2 in human oligodendrocytes, revealing new insights into white matter diseases with the aid of machine learning.
Before our research program, generating reliable human CNS tissues that accurately mimicked in vivo conditions was a challenge. Our early studies (2014-2018) on axial stem cells led to novel in vitro techniques, uncovering new progenitor cells (neuromesodermal progenitors) that form the spinal cord and caudal hindbrain. This work has driven interest in generating human spinal cord tissues for drug screening against neural tube defects.
From 2018-2022, we developed platforms to model different CNS domains using organoids, optimizing conditions to generate white matter-like tissues for drug screening. Our discovery of the anti-aging protein Klotho's role in inhibiting neuronal senescence and the creation of forebrain-like tissues with choroid plexus for modeling SARS-CoV-2 neuropathology in Down syndrome significantly advance disease modeling in vitro.
Recent work identified NELL2 in oligodendroglia, associated with white matter diseases like leukodystrophy. We have established national and international collaborations for further research and drug screening.
My efforts have been recognized with several awards, including the Early Career Researcher Fellowship from the Children’s Hospital Foundation and the European Leukodystrophy International Association Grant. I have presented my work at prestigious conferences and received multiple awards.
Works
Search Professor Mohammed Shaker’s works on UQ eSpace
2024
Journal Article
Valproic acid-induced teratogenicity is driven by senescence and prevented by Rapamycin in human spinal cord and animal models
Pietrogrande, Giovanni, Shaker, Mohammed R., Stednitz, Sarah J., Soheilmoghaddam, Farhad, Aguado, Julio, Morrison, Sean D., Zambrano, Samuel, Tabassum, Tahmina, Javed, Ibrahim, Cooper-White, Justin, Davis, Thomas P., O’Brien, Terence J., Scott, Ethan K. and Wolvetang, Ernst J. (2024). Valproic acid-induced teratogenicity is driven by senescence and prevented by Rapamycin in human spinal cord and animal models. Molecular Psychiatry, 1-13. doi: 10.1038/s41380-024-02732-0
2024
Journal Article
Choroid plexus defects in Down syndrome brain organoids enhance neurotropism of SARS-CoV-2
Shaker, Mohammed R., Slonchak, Andrii, Al-Mhanawi, Bahaa, Morrison, Sean D., Sng, Julian D.J., Cooper-White, Justin, Khromykh, Alexander A. and Wolvetang, Ernst J. (2024). Choroid plexus defects in Down syndrome brain organoids enhance neurotropism of SARS-CoV-2. Science Advances, 10 (23) eadj4735, 1-23. doi: 10.1126/sciadv.adj4735
2024
Journal Article
A roadmap for selecting and utilizing optimal features in scRNA sequencing data analysis for stem cell research: a comprehensive review
Alani, Maath, Altarturih, Hamza, Pars, Selin, Al-Mhanawi, Bahaa, Wolvetang, Ernst J. and Shaker, Mohammed R. (2024). A roadmap for selecting and utilizing optimal features in scRNA sequencing data analysis for stem cell research: a comprehensive review. International Journal of Stem Cells, 1-16. doi: 10.15283/ijsc23170
2023
Journal Article
Protocol for generating embedding-free brain organoids enriched with oligodendrocytes
Al-mhanawi, Bahaa, Marti, Marta Boira, Morrison, Sean D., Gupta, Pallavi, Alani, Maath, Noakes, Peter G., Wolvetang, Ernst J. and Shaker, Mohammed R. (2023). Protocol for generating embedding-free brain organoids enriched with oligodendrocytes. STAR Protocols, 4 (4) 102725, 1-18. doi: 10.1016/j.xpro.2023.102725
2023
Journal Article
Transcriptional signature of valproic acid-induced neural tube defects in human spinal cord organoids
Lee, Ju-Hyun, Shaker, Mohammed R., Park, Si-Hyung and Sun, Woong (2023). Transcriptional signature of valproic acid-induced neural tube defects in human spinal cord organoids. International Journal of Stem Cells, 16 (4), 385-393. doi: 10.15283/ijsc23012
2023
Conference Publication
Chemogenetic modulation of human in vitro motoneuron development accelerates maturation trajectory and electrophysical properties
Morrison, Sean, Shaker, Mohammed, Pietrogrande, Giovanni, Wolvetang, Ernst and Noakes, Peter (2023). Chemogenetic modulation of human in vitro motoneuron development accelerates maturation trajectory and electrophysical properties. ISN‐ESN 2023 Meeting, Porto, Portugal, 8‐11 August 2023. Chichester, West Sussex, United Kingdom: Wiley-Blackwell.
2023
Journal Article
Choroid plexus defects in Down syndrome brain organoids enhance neurotropism of SARS-CoV-2
Shaker, Mohammed R., Slonchak, Andrii, Al-mhanawi, Bahaa, Morrison, Sean D., Sng, Julian D. J., Cooper-White, Justin, Khromykh, Alexander A. and Wolvetang, Ernst J. (2023). Choroid plexus defects in Down syndrome brain organoids enhance neurotropism of SARS-CoV-2. bioRxiv, 10 (23) eadj4735, eadj4735. doi: 10.1101/2023.06.12.544552
2022
Journal Article
Robust and highly reproducible generation of cortical brain organoids for modelling brain neuronal senescence in vitro
Shaker, Mohammed R., Hunter, Zoe L. and Wolvetang, Ernst J. (2022). Robust and highly reproducible generation of cortical brain organoids for modelling brain neuronal senescence in vitro. Journal of Visualized Experiments, 2022 (183) e63714. doi: 10.3791/63714
2022
Journal Article
Human induced pluripotent stem cells generated from epilepsy patients for use as in vitro models for drug screening
Hunter, Zoe L., Leeson, Hannah C., Shaker, Mohammed R., Wolvetang, Ernst J. and Vadlamudi, Lata (2022). Human induced pluripotent stem cells generated from epilepsy patients for use as in vitro models for drug screening. Stem Cell Research, 60 102673, 102673. doi: 10.1016/j.scr.2022.102673
2022
Journal Article
Production of human spinal-cord organoids recapitulating neural-tube morphogenesis
Lee, Ju-Hyun, Shin, Hyogeun, Shaker, Mohammed R., Kim, Hyun Jung, Park, Si-Hyung, Kim, June Hoan, Lee, Namwon, Kang, Minjin, Cho, Subin, Kwak, Tae Hwan, Kim, Jong Woon, Song, Mi-Ryoung, Kwon, Seung-Hae, Han, Dong Wook, Lee, Sanghyuk, Choi, Se-Young, Rhyu, Im Joo, Kim, Hyun, Geum, Dongho, Cho, Il-Joo and Sun, Woong (2022). Production of human spinal-cord organoids recapitulating neural-tube morphogenesis. Nature Biomedical Engineering, 6 (4), 435-448. doi: 10.1038/s41551-022-00868-4
2022
Journal Article
Neural epidermal growth factor-like like protein 2 is expressed in human oligodendroglial cell types
Shaker, Mohammed R., Kahtan, Amna, Prasad, Renuka, Lee, Ju-Hyun, Pietrogrande, Giovanni, Leeson, Hannah C., Sun, Woong, Wolvetang, Ernst J. and Slonchak, Andrii (2022). Neural epidermal growth factor-like like protein 2 is expressed in human oligodendroglial cell types. Frontiers in Cell and Developmental Biology, 10 803061, 803061. doi: 10.3389/fcell.2022.803061
2021
Journal Article
Hypermethylation of Mest promoter causes aberrant Wnt signaling in patients with Alzheimer's disease
Prasad, Renuka, Jung, Hwajin, Tan, Anderson, Song, Yonghee, Moon, Sungho, Shaker, Mohammed R., Sun, Woong, Lee, Junghee, Ryu, Hoon, Lim, Hyun Kook and Jho, Eek-hoon (2021). Hypermethylation of Mest promoter causes aberrant Wnt signaling in patients with Alzheimer's disease. Scientific Reports, 11 (1) 20075, 20075. doi: 10.1038/s41598-021-99562-9
2021
Journal Article
Spatiotemporal contribution of neuromesodermal progenitor-derived neural cells in the elongation of developing mouse spinal cord
Shaker, Mohammed R., Lee, Ju-Hyun, Kim, Kyung Hyun, Ban, Saeli, Kim, Veronica Jihyun, Kim, Joo Yeon, Lee, Ji Yeoun and Sun, Woong (2021). Spatiotemporal contribution of neuromesodermal progenitor-derived neural cells in the elongation of developing mouse spinal cord. Life Sciences, 282 119393, 1-11. doi: 10.1016/j.lfs.2021.119393
2021
Journal Article
Generation of induced pluripotent stem cell lines from peripheral blood mononuclear cells of three drug resistant and three drug responsive epilepsy patients
Hunter, Zoe L., Leeson, Hannah C., Shaker, Mohammed R., Wolvetang, Ernst J. and Vadlamudi, Lata (2021). Generation of induced pluripotent stem cell lines from peripheral blood mononuclear cells of three drug resistant and three drug responsive epilepsy patients. Stem Cell Research, 56 102564, 102564. doi: 10.1016/j.scr.2021.102564
2021
Journal Article
Inhibition of the cGAS‐STING pathway ameliorates the premature senescence hallmarks of Ataxia‐Telangiectasia brain organoids
Aguado, Julio, Chaggar, Harman K., Gómez‐Inclán, Cecilia, Shaker, Mohammed R., Leeson, Hannah C., Mackay‐Sim, Alan and Wolvetang, Ernst J. (2021). Inhibition of the cGAS‐STING pathway ameliorates the premature senescence hallmarks of Ataxia‐Telangiectasia brain organoids. Aging Cell, 20 (9) e13468, 1-16. doi: 10.1111/acel.13468
2021
Journal Article
Klotho inhibits neuronal senescence in human brain organoids
Shaker, Mohammed R., Aguado, Julio, Chaggar, Harman Kaur and Wolvetang, Ernst J. (2021). Klotho inhibits neuronal senescence in human brain organoids. npj Aging and Mechanisms of Disease, 7 (1) 18, 1-12. doi: 10.1038/s41514-021-00070-x
2021
Journal Article
Embryonal neuromesodermal progenitors for caudal central nervous system and tissue development
Shaker, Mohammed R., Lee, Ju-Hyun and Sun, Woong (2021). Embryonal neuromesodermal progenitors for caudal central nervous system and tissue development. Journal of Korean Neurosurgical Society, 64 (3), 359-366. doi: 10.3340/jkns.2020.0359
2021
Journal Article
Rapid and efficient generation of myelinating human oligodendrocytes in organoids
Shaker, Mohammed R., Pietrogrande, Giovanni, Martin, Sally, Lee, Ju-Hyun, Woong, Sun and Wolvetang, Ernst J. (2021). Rapid and efficient generation of myelinating human oligodendrocytes in organoids. Frontiers in Cellular Neuroscience, 15 631548, 1-11. doi: 10.3389/fncel.2021.631548
2020
Journal Article
Human spinal cord organoids exhibiting neural tube morphogenesis for a quantifiable drug screening system of neural tube defects
Lee, Ju-Hyun, Shin, Hyogeun, Shaker, Mohammed R., Kim, Hyun Jung, Kim, June Hoan, Lee, Namwon, Kang, Minjin, Cho, Subin, Kwak, Tae Hwan and Sun, Woong (2020). Human spinal cord organoids exhibiting neural tube morphogenesis for a quantifiable drug screening system of neural tube defects.
2020
Journal Article
Anteroposterior Wnt-RA gradient defines adhesion and migration properties of neural progenitors in developing spinal cord
Shaker, Mohammed R., Lee, Ju-Hyun, Park, Si-Hyung, Kim, Joo Yeon, Son, Gi Hoon, Son, Jong Wan, Park, Bae Ho, Rhyu, Im Joo, Kim, Hyun and Sun, Woong (2020). Anteroposterior Wnt-RA gradient defines adhesion and migration properties of neural progenitors in developing spinal cord. Stem Cell Reports, 15 (4), 898-911. doi: 10.1016/j.stemcr.2020.08.016
Funding
Past funding
Supervision
Availability
- Dr Mohammed Shaker is:
- Available for supervision
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Supervision history
Current supervision
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Doctor Philosophy
Elucidating the role of Human Aminoacyl multi- tRNA synthetase complex (MSC) in Hypomyelination with brainstem and spinal cord involvement and leg spasticity (HBSL)
Associate Advisor
Other advisors: Associate Professor Jessica Mar, Professor Stefan Thor, Professor Ernst Wolvetang
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Doctor Philosophy
Understanding neuromuscular synaptic loss in motor neuron disease
Associate Advisor
Other advisors: Professor Ernst Wolvetang, Dr Giovanni Pietrogrande, Associate Professor Peter Noakes
Media
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