I am interested in low-dimensional geometric topology, with a focus on knot theory, quantum invariants of 3-manifolds, and knot homologies --especially in relation to concordances and 4-dimensional smooth topology. I recently got interested in the deep connections, usually provided by combinatorial algebraic topology, between discrete structures --such as matchings and discrete Morse functions-- and their smooth counterparts. As a side interest, I try to apply techniques from topological data analysis to knot theory.
School of Electrical Engineering and Computer Science
Faculty of Engineering, Architecture and Information Technology
Availability:
Available for supervision
Shakes an imaging expert that leads a strong deep learning, artificial intelligence (AI) focused research team interested in medical image analysis and signal/image processing applied to many areas of science and medicine. He received his Ph.D in Theoretical Physics from Monash University, Melbourne and has been involved in applying machine learning in medical imaging for over a decade.
Shakes’ past work has involved developing shape model-based algorithms for knee, hip and shoulder joint segmentation that is being developed and deployed as a product on the Siemens syngo.via platform. More recent work involves deep learning based algorithms for semantic segmentation and manifold learning of imaging data. Broadly, he is interested in understanding and developing the mathematical basis of imaging, image analysis algorithms and physical systems. He has developed algorithms that utilise exotic mathematical structures such as fractals, turbulence, group theoretic concepts and number theory in the image processing approaches that he has developed.
He is currently a Senior Lecturer and leads a team of 20+ researchers working image analysis and AI research across healthcare and medicine. He currently teaches the computer science courses Theory of Computation and Pattern Recognition and Analysis.
Faculty of Engineering, Architecture and Information Technology
Associate Professor
School of Electrical Engineering and Computer Science
Faculty of Engineering, Architecture and Information Technology
Availability:
Available for supervision
Media expert
Dr Archie Chapman is an Associate Professor in Computer Science in the School of Electrical Engineering and Computer Science.
Archie develops and applies principled artificial intelligence, game theory, optimisation and machine learning methods to solve large-scale and dynamic allocation, scheduling and queuing problems. His recent research has focused on applications of these techniques to problems in future power systems, such as integrating large amounts of renewable power generation and using batteries and flexible loads to provide power network and system services, while making best use of legacy network and generation infrastructure.
Prior to joining UQ, Archie was Research Fellow in Smart Grids at the University of Sydney (2011-2019), and a postdoc fellow at the University of Southampton (2009-2010), where he completed his PhD.
My current research at UQ is as Professor in this School (teaching AGRC3040 Crop Physiology) and as an Affiliate Professor of QAAFI. Since 2020, with full-time appointment at UQ, my research portfolio has included multiple projects in applications of machine learning and artificial intelligence into the ag domain. This area is developing rapidly and across UQ, I am engaging with faculty in multiple schools (ITEE, Maths and Physics, Mining and Mech Engineering) as well as in the Research Computing Centre to develop new projects and training opportunities at the interface of field agriculture and these new digital analytics.
My career research has been around genetic and environment effects on physiology of field crops, particularly where drought dominates. Application of quantitative approaches (crop simulation and statistical methods) and phenotyping (aerial imaging, canopy monitoring) to integrate the understanding of interactions of genetics, growth and development and the bio-physical environment on crop yield. In recent years, this work has expanded more generally into various applications in digital agriculture from work on canopy temperature sensing for irrigation decisions (CSIRO Entrepreneurship Award 2022) through to applications of deep-learning to imagery to assist breeding programs.
Much of this research was undertaken with CSIRO since 1996. Building on an almost continuous collaboration with UQ over that time, including as an Adjunct Professor to QAAFI, Prof Chapman was jointly appointed (50%) as a Professor in Crop Physiology in the UQ School of Agriculture and Food Sciences from 2017 to 2020, and at 100% with UQ from Sep 2020. He has led numerous research projects that impact local and global public and private breeding programs in wheat, sorghum, sunflower and sugarcane; led a national research program on research in ‘Climate-Ready Cereals’ in the early 2010s; and was one of the first researchers to deploy UAV technologies to monitor plant breeding programs. Current projects include a US DoE project with Purdue University, and multiple projects with CSIRO, U Adelaide, La Trobe, INRA (France) and U Tokyo. With > 8500 citations, Prof Chapman is currently in the top 1% of authors cited in the ESI fields of Plant and Animal Sciences and in Agricultural Sciences.
School of Electrical Engineering and Computer Science
Faculty of Engineering, Architecture and Information Technology
Availability:
Available for supervision
Media expert
Jen Jen Chung is an Associate Professor in Mechatronics within the School of Electrical Engineering and Computer Science at The University of Queensland. Her current research interests include perception, planning and learning for robotic mobile manipulation, algorithms for robot navigation through human crowds, informative path planning and adaptive sampling. Prior to working at UQ, Jen Jen was a Senior Researcher in the Autonomous Systems Lab (ASL) at ETH Zürich from 2018-2022 and was a Postdoctoral Scholar at Oregon State University researching multiagent learning methods from 2014-2017. She completed her Ph.D. on information-based exploration-exploitation strategies for autonomous soaring platforms at the Australian Centre for Field Robotics in the University of Sydney. She received her Ph.D. (2014) and B.E. (2010) from the University of Sydney.
School of Electrical Engineering and Computer Science
Faculty of Engineering, Architecture and Information Technology
Availability:
Available for supervision
My research explores how Virtual and Augmented Reality technologies enable users to better understand and interact with complex data. I also focus on the engineering and evaluation of interactive visualisation systems and the design of Augmented Reality interfaces for industry applications. I have authored 60+ publications in top-ranked Human Computer Interaction and Information Visualisation conference proceedings and journals, including in ACM CHI, ACM UIST, ACM ISS, IEEE InfoVis/TVCG, IEEE VR.
In 2021 and 2022, I was nominated Australia’s Field Leader researcher in Computer Graphics (The Australian Research magazine yearly ranking).
Faculty of Engineering, Architecture and Information Technology
Availability:
Available for supervision
Media expert
my research interests are in the design of diagnostic medical devices and new applications for those devices
Prof Crozier is the director of Biomedical Engineering at UQ. He holds a higher doctorate in engineering for his work in improving the technology of imaging equipment. Stuart was elelcted as a fellow of the institute of physics (UK) in 2004 and hold many national and international grants relating to medical imaging and medical devices.
Faculty of Engineering, Architecture and Information Technology
Senior Lecturer
School of Electrical Engineering and Computer Science
Faculty of Engineering, Architecture and Information Technology
Availability:
Available for supervision
Yi Cui received his B. Eng. and M.Eng. degrees from Southwest Jiaotong University, Chengdu, China, in 2009 and 2012, respectively, and received the Ph.D. degree in Electrical Engineering at University of Queensland, Brisbane, Australia, in 2016.
Dr Cui has been a Research Associate in the Department of Electrical Engineering and Computer Science, University of Tennessee, Knoxville, USA since 2016. Currently, he is a Senior Lecturer in the School of Electrical Engineering and Computer Science, University of Queensland, Australia. His research interests include wide-area monitoring and control, data analytics and cyber-security of smart grids, condition assessment and fault diagnosis of power transformers.
Faculty of Engineering, Architecture and Information Technology
Professor in Artificial Intelligence
School of Electrical Engineering and Computer Science
Faculty of Engineering, Architecture and Information Technology
Availability:
Available for supervision
Media expert
Shane Culpepper is a Professor of Artificial Intelligence at the University of Queensland in St. Lucia, Australia. Before joining the University of Queensland in 2023, Professor Culpepper held a continuing academic position at RMIT University in Melbourne, Australia. He received his PhD in Computer Science from the University of Melbourne in 2008. His research focuses primarily on building better Search and Recommendation Systems and is primarily interested how to responsibly integrate efficient and scalable generative AI models for search, recommendation, and question answering. Professor Culpepper’s work has applications in a number of downstream applications for Legal, Health, real estate speculation. He has been instrumental in founding the AI Research Network and the Research Center for Enterprise AI at the University of Queensland.
Over his 17 year career, Professor Culpepper has supervised 19 PhD students and co-authored more than 140 peer reviewed papers with 132 different research collaborators on problems that range from core basic research, such as algorithm efficiency and scalability, to practical real world problems on building and deploying new machine learning algorithms for search and recommendation systems. While often technical, his work is always user-driven as humans are the main consumers of this technology. This user-centric research focus has led to several papers on controlled user studies which guide the development of better evaluation techniques which model human behaviour. In the last 5 years, Professor Culpepper has been a program co-chair for international conferences such as SIGIR and CIKM, and co-organized conferences such as WSDM and SWIRL. Professor Culpepper previously held an ARC DECRA fellowship in 2013 as well as an RMIT Vice-Chancellor's Principal Researcher fellowship in 2017. Before joining the University of Queensland. Professor Culpepper was the founding director of the Centre for Information Discovery and Data Analytics at RMIT University. In total, he has been a chief investigator on 11 research grants totalling ~$3.8 Million AUD.
Faculty of Health, Medicine and Behavioural Sciences
Availability:
Available for supervision
Robert is a Research Fellow who joined the RECOVER Injury Research Centre in 2024. He is part of the Technology-enabled rehabilitation team, which focuses on developing more effective and efficient health services supported by technology innovation.
Robert's previous research revolved around the application of Virtual Reality (VR) for burn injury rehabilitation. Using collaborative design with burn survivors and healthcare professionals, he has developed functional VR rehabilitation prototypes tailored for burn injuries.
Robert's research interests include the application of serious games in healthcare settings.
Faculty of Health, Medicine and Behavioural Sciences
Research Fellow
School of Health and Rehabilitation Sciences
Faculty of Health, Medicine and Behavioural Sciences
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Available for supervision
Dr Jonathan Davies is a chronic pain researcher working to improve how pain is understood, assessed and treated. His research focuses on pain phenotyping, precision pain care, and the psychological, physiological and contextual factors that shape pain and treatment response.
At UQ’s Centre for Innovation in Pain and Health Research, he contributes to DISCERN, an NHMRC Synergy-funded multidisciplinary research program developing and validating new approaches to pain assessment. A major focus of his work is DECIPHER PAIN, a standardised, multimodal tool designed to characterise the relative contributions of nociceptive, neuropathic and nociplastic pain and support more personalised care.
His research integrates clinical assessment, quantitative sensory testing, experimental pain methods, psychophysiology, digital health and population data. He is particularly interested in how physiological signals, behaviour, language, psychosocial context and real-world health data can be combined to better understand individual differences in pain and treatment outcomes.
His broader expertise includes placebo and nocebo effects, mindfulness, mental health, quality of life, health outcome measurement and population health. His work aims to support more precise, scalable and patient-centred approaches to pain research and care.
School of Electrical Engineering and Computer Science
Faculty of Engineering, Architecture and Information Technology
Affiliate of Centre for Enterprise AI
Centre for Enterprise AI
Faculty of Engineering, Architecture and Information Technology
Availability:
Available for supervision
Media expert
Dr. Gianluca Demartini is a Professor in Data Science and an ARC Future Fellow at the University of Queensland, Australia. His main research interests include Information Retrieval, Semantic Web, and Human Computation. His research is currently funded by the Australian Research Council, the Swiss National Science Foundation, Meta, Google, and the Wikimedia Foundation. He received Best Paper Awards at the ACM SIGIR International Conference on the Theory of Information Retrieval (ICTIR) in 2023, AAAI Conference on Human Computation and Crowdsourcing (HCOMP) in 2018, at the European Conference on Information Retrieval (ECIR) in 2016 and 2020, and the Best Demo award at the International Semantic Web Conference (ISWC) in 2011. He has published more than 200 peer-reviewed scientific publications including papers at major venues such as WWW, ACM SIGIR, VLDBJ, ISWC, and ACM CHI. He is an ACM Senior Member, ACM Distinguished Speaker, and a TEDx speaker.
Before joining the University of Queensland, he was a Lecturer at the University of Sheffield in UK, post-doctoral researcher at the eXascale Infolab at the University of Fribourg in Switzerland, visiting researcher at UC Berkeley, junior researcher at the L3S Research Center in Germany, and intern at Yahoo! Research in Spain. In 2011, he obtained a Ph.D. in Computer Science at the Leibniz University of Hannover in Germany focusing on Semantic Search.
Pratap is an IP Strategist and Patent researcher. He has expertise in dealing with Intellectual Property issues in relation to emerging technologies such as Artificial Intelligence (AI), 3D bioprinting and synthetic biology. He is currently a Postdoctoral fellow at TC Bernie School of Law, University of Queensland, Australia. Pratap pursued his PhD from the Centre for Law and Genetics, University of Tasmania, Australia where his research was focused on "Patenting issues related to Bioprinted tissues and Bioinks." In 2018, he was invited by Govt. of Japan to assist the Japanese Patent Office (JPO) in harmonizing Japanese Patent Law in relation to AI. In 2017, he completed his Master of Law (LLM) in Intellectual Property from the World Intellectual Property Organization (WIPO), Geneva and the Queensland University of Technology, Australia. He is the recipient of the prestigious International Fellowship offered by WIPO. He holds a Master's degree in Genomics from the Central University of Kerala, India and a Bachelor’s degree in Biotechnology, Microbiology, and Chemistry from Acharya Nagarjuna University, India. Pratap also holds a Postgraduate Diploma in Patent informatics from the Academy of Scientific and Innovative Research (AcSIR) at the CSIR Unit of Research and Development of Information Products (URDIP), India and worked as a Patent researcher in the same.
School of Electrical Engineering and Computer Science
Faculty of Engineering, Architecture and Information Technology
Availability:
Available for supervision
Dr Chelsea Dobbins is an Associate Professor within the School of Electrical Engineering and Computer Science (EECS) at The University of Queensland. She has a background in Software Engineering with expertise in Digital Signal Processing, Applied Machine Learning, and Human–Computer Interaction.
Her research focuses on the use of sensing technologies and intelligent data analysis to understand behaviour, emotion, and wellbeing, with applications spanning both human and animal contexts. In addition to her work on emotion detection using smartphones and wearable sensors within personal informatics and digital health, her research increasingly explores the use of computational technologies for animal conservation and welfare, including the application of machine learning, and mobile/embedded sensing to monitor behaviour and environmental interactions in animals.
Her work intersects areas such as affective computing, pervasive computing, digital health, conservation technology, bio‑inspired sensing, human–computer interaction, mobile and wearable sensors, and physiological computing.
Affiliate Research Fellow of School of Information Technology and Electrical Engineering
School of Electrical Engineering and Computer Science
Faculty of Engineering, Architecture and Information Technology
Senior Lecturer
Graduate Research School
Senior Lecturer
School of Communication and Arts
Faculty of Humanities, Arts and Social Sciences
Availability:
Available for supervision
Media expert
Skye Doherty is a senior lecturer in the School of Communication and Arts at UQ. She is an expert in using creative and design-led research methods to explore alternative futures and address wicked problems. Her work has responded to issues in the news media, law, disaster resilience, and energy and water security, among others, and has led to both conceptual and practical outcomes.
Her design artefacts include the NewsCube, an award-winning storytelling tool, Vim, a tangible energy story, a suite of concepts for community-led bushfire management, and Wicked Thinking, an independent magazine. She has developed frameworks for journalism innovation and used codesign methods to improve the experiences of injured workers, a project that led to legislative change.
Her current and recent projects include the GEF-funded Coral Reef Rescue project and the ARC Training Centre for Climate-Resilient Water. She is the current Treasurer of the International Association for Media and Communication Research (IAMCR) and is a member of UQ’s Human-Centred Computing research group in the School of Electrical Engineering and Computer Science. Previously, she led the Global Change Scholars Program in the UQ Graduate School – a year-long PhD experience focused on industry research collaboration and impact.
She came to academic research after an international career as a journalist, and her experience spans leading international media companies as well as startups.
Faculty of Engineering, Architecture and Information Technology
Senior Lecturer
School of Electrical Engineering and Computer Science
Faculty of Engineering, Architecture and Information Technology
Availability:
Available for supervision
Media expert
Dr. Naipeng Dong is an expert in automatic formal verification of security and privacy in cryptographic protocols, Android applications and blockchain systems.
She has developed efficient automatic formal verification techniques with a focus on attacker reasoning and analysis on cryptogrpahic protocols, developed algorithms to verify fault-tolerance of systems with dishonest participants, and analysed systems in e-auction, e-health, Single-Sign-on authentication, and blockchain consensus.
Affiliate of ARC COE for Plant Success in Nature and Agriculture
ARC COE for Plant Success in Nature and Agriculture
Faculty of Science
Adjunct Associate Lecturer
Queensland Alliance for Agriculture and Food Innovation
Availability:
Available for supervision
Dr Daniel Edge-Garza is a horticulture and crop geneticist at the Queensland Alliance for Agriculture and Food Innovation at the University of Queensland, Australia. His research interests are to develop and translate tools using genome-wide DNA information for breeders and growers to make meaningful decisions. Daniel’s PhD awarded by the University of Queensland in 2024 focused on identifying global G x E patterns to assist with improved germplasm-environment matching for commercial deployment. Before joining QAAFI, he obtained his Bachelor's Degree in Biological Sciences in 2005 and Master's Degree in Biotechnology in 2009 both at California State University, Fresno. From 2008, he worked as a faculty associate in research for tree fruit breeding at Washington State University becoming recognized worldwide for his efforts to streamline the deployment of DNA tests for pome and stone fruit breeding programs. He has also collaborated with the Genome Database for Rosaceae since 2018 to curate genomics data and train breeders on how to upload and access their data on the Breeding Information Management System.
Faculty of Engineering, Architecture and Information Technology
Associate Professor in Design (Built Environments)
School of Architecture, Design and Planning
Faculty of Engineering, Architecture and Information Technology
Availability:
Available for supervision
Media expert
Assoc Prof Fred Fialho Teixeira is an architect, media artist and associate professor at University of Queensland, School of Architecture, Design and Planning and director of the UQ VisLab. He has been working in the fields of computational architecture, biodesign and immersive environments for the last 20 years. He has been awarded the Dean's Fellowship from the University of California where he initiated is PhD and developed innovative biological-based design strategies at the California Nano Systems Institute. He's an alumni of the Architectural Association, School of Architecture (AA) and accredited architect by Royal Institute of British Architects (RIBA) and Portuguese Chamber of Architects (OA) and also practiced for high profile offices such as Zaha Hadid Architects. Presently his research work on bio-design and spatial computation combines the use of mixed reality, advanced manufacturing and biomaterials to enable the next generation of built environments
Memberships
Architectural Association, School of Architecture (UK),Royal Institute of British Architects (UK), Chamber of Architects (PT), Australian Smart Communities Association (AU), UQ CyberResearch Centre
Affiliate of Minerals Industry Safety and Health Centre
Minerals Industry Safety and Health Centre
Faculty of Engineering, Architecture and Information Technology
Affiliate of W.H. Bryan Mining and Geology Research Centre
WH Bryan Mining Geology Research Centre
Faculty of Engineering, Architecture and Information Technology
Affiliate of Julius Kruttschnitt Mineral Research Centre
Julius Kruttschnitt Mineral Research Centre
Faculty of Engineering, Architecture and Information Technology
Senior Research Fellow
Sustainable Minerals Institute
Faculty of Engineering, Architecture and Information Technology
Availability:
Available for supervision
Gordon holds a PhD in Chemical Engineering from the University of Cape Town, South Africa, which focused on the application of machine vision, image processing and machine learning algorithms for modelling grade in froth flotation systems.
Gordon spent ten years working for the Victorian Government developing technical computing and modelling solutions. These included the development of the Environmental Systems Modelling Platform, a tool that aims to bring multiple environmental models and datasets into a single easy to use software package, and the development of the Native Vegetation Regulations Tool, to calculate the interactions between proposed clearings and models of rare and threatened species, and thereby determine the required offset credits. More recently, Gordon worked as a data scientist at the Victorian Centre for Data Insights, where he worked with a team focused on delivering innovative data driven solutions across the government sector.
Gordon now applies his data analytics, modelling and technical computing skills at the JKMRC where he works with the Advanced Process Prediction and Control group developing tools for improved time series analysis and visualisation of industrial data and comminution process models.
Dr Forbes has an extensive background in applying optimisation methods to industrial problems. He spent over 20 years working in industry before returning to academia in 2010. Dr Forbes now focuses on building Mixed Integer Programming models for industrial applications and specialised techniques for solving difficult Mixed Integer Programming models.
Dr Forbes has experience in many application areas including
vehicle routing;
supply chain optimisation;
mine planning;
public transport vehicle and crew scheduling and rostering (buses, trains and planes);
hospital staff scheduling and rostering, including operation scheduling and room allocation;