Affiliate of Centre for Cardiovascular Health and Research
Centre for Cardiovascular Health and Research
Faculty of Health, Medicine and Behavioural Sciences
Affiliate of Centre for Extracellular Vesicle Nanomedicine
Centre for Extracellular Vesicle Nanomedicine
Faculty of Health, Medicine and Behavioural Sciences
Senior Lecturer
School of Chemical Engineering
Faculty of Engineering, Architecture and Information Technology
Availability:
Available for supervision
Media expert
Dr Mark C Allenby is a Senior Lecturer in Biomedical Engineering (2021-ongoing) within UQ's School of Chemical Engineering, and an emerging leader in haematopoietic and vascular tissue engineering. Since his PhD, Mark has been awarded ten consecutive years of clinical, fundamental, and industrial research fellowships in the field of tissue engineering (ARC FoR 400311):
Heart Foundation Future Leader Fellowship (2025 - 2029). Engineering vessels to grow and test blood cell therapies.
Australian Research Council DECRA Fellowship (2022 - 2025). Vascularised tissues for cell therapy biomanufacturing.
Advance Queensland Industry Research Fellowship (2019 - 2022). Cerebral and cardio-vascular tissue biofabrication.
Mark has principally supervised 5 PhDs and 2 MPhil/RAs, co-supervised 7 PhDs, and has been awarded over $3.7m of funding as chief investigator across 25 competitive funding rounds in 7 years. Mark received a PhD and MSc in chemical engineering from Imperial College London, UK and bachelors degrees in mathematics and chemistry from Pepperdine University, USA. Mark's leadership is exhibited by the:
2025 Cell and Gene Catalyst Workforce Committee Expert
2024 UQ Foundation Research Excellence Award
2024 UQ EAIT EMCR Industry Engagement Award
2024 ASBTE Emerging Leadership Award
2024 Friends of CCRM Australia Industry Advisory Network
2024, 2023, and 2022 Executive Board Member of ASBTE
2023TERMIS-AP Young Investigator Award
2023 RegMedNet Rising Star Finalist
2020 QUT ECR Award
Research Interests: Mark leads the BioMimetic Systems Engineering (BMSE) Lab. In the BMSE Lab, we combine Tissue Engineering, Biomedical Image Analysis, and Computational Biology to study and solve medical problems using advanced cell culture and computer models. Our work aligns with bioprocess engineering fundamentals, cell therapy or medical device manufacturing, and clinical collaborators in Haematology and Cardiovascular medicine. We are always looking for excellent postdoctoral, PhD, MPhil, and honours researchers, funded positions are advertised on our lab website.
Academic Interests: Mark is the Convener of UQ's Biomedical Engineering (BME) major, ranked #2 in Australia. BME at UQ spans schools of Chemical Engineering (ChE; #1 in Australia), Electrical Engineering, and Mechanical Engineering. Mark is the deputy director of higher degree research (HDR) students in UQ ChE. Mark is the creator and coordinator of Quantitative Methods in Biomedical Engineering, and is a lecturer of Process Modeling & Dynamics. Mark has taught courses in biomaterials, process modelling, and reaction engineering in ChE and BME departments at universities in the UK and Australia.
School of Electrical Engineering and Computer Science
Faculty of Engineering, Architecture and Information Technology
Availability:
Available for supervision
Shakes an imaging expert that leads a strong deep learning, artificial intelligence (AI) focused research team interested in medical image analysis and signal/image processing applied to many areas of science and medicine. He received his Ph.D in Theoretical Physics from Monash University, Melbourne and has been involved in applying machine learning in medical imaging for over a decade.
Shakes’ past work has involved developing shape model-based algorithms for knee, hip and shoulder joint segmentation that is being developed and deployed as a product on the Siemens syngo.via platform. More recent work involves deep learning based algorithms for semantic segmentation and manifold learning of imaging data. Broadly, he is interested in understanding and developing the mathematical basis of imaging, image analysis algorithms and physical systems. He has developed algorithms that utilise exotic mathematical structures such as fractals, turbulence, group theoretic concepts and number theory in the image processing approaches that he has developed.
He is currently a Senior Lecturer and leads a team of 20+ researchers working image analysis and AI research across healthcare and medicine. He currently teaches the computer science courses Theory of Computation and Pattern Recognition and Analysis.
School of Electrical Engineering and Computer Science
Faculty of Engineering, Architecture and Information Technology
Availability:
Available for supervision
Dr Torniainen's main research interests are in the fields of biomedical signal and image processing, biophotonics, and applied spectroscopy. He holds BSc/MSc in Electrical Engineering from Aalto University (Finland, 2015) and a PhD in Applied Physics from University of Eastern Finland (Finland, 2020). He has previously worked with developing preprocessing techniques for EEG/MEG, real-time analysis methods for physiological signals (e.g., ECG/EMG/EDA), and near-infrared spectroscopy based analysis of tissue integrity for musculoskeletal tissues. His current research focus is on machine learning in image processing, analysis, and synthesis of biomedical images acquired using a combination of terahertz imaging, nano-FTIR, and Raman spectroscopy. The purpose of this study is to better understand the interaction between light and multi-layered tissues such as articular cartilage and skin.