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Functional genomics and molecular physiology of nodules.

Professor Gresshoff is the Director of the ARC Centre of Excellence for Integrative Legume Research.

His main research interests are the following areas:

1) Functional genomic analysis of nodulation and nitrogen fixation in legumes:

• Molecular components of the control of nodulation (AON) in soybean and Lotus japonicus
• Analysis of ethylene and ABA insensitive legume mutants and transgenics
• Genetic transformation of soybean and Lotus
• Transcription analysis of legumes
• Analysis of acid soil effect on nodulation
• Analysis of Nodulation factor receptors NFR1 and NFR5 in soybean
• Mutational analysis of the GmNARK receptor kinase

2) Sustainable Biofuel Production from Legume Tree Pongamia pinnata:

• Analysis of genetic stability
• Fatty acid analysis
• Field trials
• Clonal propagation
• Gene and promoter discovery
• Functional genomics
• Genetic transformation

Professor Gresshoff is member of the editorial boards of several international journals (among others Molecular Plant, J. Plant Physiology, Symbiosis). He also is a member of the Advisory Committee of the OGTR as well as the Biofuel and Bioenergy Committee of RIRDC.

I undertake multi-disciplinary collaborative research developing mathematical, computational and visualisation approaches and techniques that facilitate the research and education in animal and plant systems.

My major research theme is development of mathematical, computer graphics and simulation approaches and techniques that facilitate the study of genetics, physiology, morphogenesis and ecology at the scale of cells, individual plants and insects and their components. These developments in computational biology are being used to increase our understanding of the dynamics of morphogenesis, and as a tool in applied research and education.

Centre for Solar Biotechnology: Prof Ben Hankamer is the founding director of the Solar Biofuels Consortium (2007) and Centre for Solar Biotechnology (2016) which is focused on developing next generation microalgae systems. These systems are designed to tap into the huge energy resource of the sun (>2300x global energy demand) and capture CO2 to produce a wide-range of products. These include solar fuels (e.g. H2 from water, oil, methane and ethanol), foods (e.g. health foods) and high value products (e.g. vaccines produced in algae). Microalgae systems also support important eco-services such as water purification and CO2 sequestration. The Centre is being launched in 2016/2017 and includes approximately 30 teams with skills ranging from genome sequencing through to demonstration systems optimsation and accompanying techno-economis and life cycle analysis. The Centre teams have worked extensively with industry.

Structural Biology: The photosynthetic machinery is the biological interface of microalgae that taps into the huge energy resource of the sun, powers the biosphere and produces the atmospheric oxygen that supports life on Earth. My team uses high resolution single particle analysis and electron tomography to solve the intricate 3D architecture of the photosynthetic machinery to enable structure guided design of high efficiency microalgae cell lines and advanced artificial solar fuel systems.

Science and technology of ecological engineering of ferrous and base metal mine tailings (e.g., magnetite tailings, bauxite residues (or red mud), Cu/Pb-Zn tailings) into functional technosols and hardpan-based soil systems for sustainable tailings rehabilitation: geo-microbial ecology, mineral bioweathering, geo-rhizosphere biology, technosol-plant relations in mined environments. Championing nature-based solutions to global mine wastes challenges.

Longbin Huang is a full professor and a Program leader in The University of Queensland, leading a research program of "Ecological Engineering in Mining" to develop naure-based methdology and technology, for assisting the world's mining industry to meet the global tailings challenge. Driven by the passion to translate leading knowledge into industry solutions, Longbin has pioneered transformative concepts and approach to tackle rehabilitation of mine wastes (e.g., tailings, acidic and metalliferous waste rocks). Recent success includes the "ecological engineering of Fe-ore tailings and bauxite residue" into soil, for overcoming the topsoil deficit challenge facing the mining industry. Scaled up field trials have been going on to deliver the much-needed technology into field operations. Long-term and multi-site based field trials have demonstrated for the first time, the field-feasibility to accelerate nature-based soil formaiton processes for developing tailings into adaptive and sustainable soil (or technosol) capable of sustaining plant community growth and development (https://www.youtube.com/watch?v=6VzfiWL-8UI&t=4s).

The program consists of a group of researchers with leading knowledge and research skills on: soil/geo-microbial ecology, environmental mineralogy, bioweathering of minerals, native plant rhizosphere (micro)biology, soil-plant relations, and environmental materials (such as biochar and environmental geopolymers). It aims to deliver transformative knowledge and practices (i.e., technologies/methdologies) in the rehabilitation of mine wastes (e.g., tailings, mineral residues, spoils, waste rocks) and mined landscapes for non-polluting and ecologically and financially sustainable outcomes.

In partnership with leading mining companies, Longbin and his team have been focusing on developing game-changing knowledge and technologies of tailings valorisation for achieving non-polluting and ecologically sustainable rehabilitation of, for example, coal mine spoils and tailings, Fe-ore tailings, bauxite residues (or red mud), and Cu/Pb-Zn tailings. Leading the global progress in bauxite rehabilitation, Longbin and his team are currently taking on field-scale research projects on bauxite residue rehabilitation technologies at alumina refineries in Queensland (QAL- and Yarwun refineries) and Northern Territory (Gove refinery).

Longbin's industry-partnered research was recognised in 2019 UQ’s Partners in Research Excellence Award (Resilient Environments) (Rio Tinto and QAL).

Membership of Board, Committee and Society

Professional associations and societies

2010 – Present Australian Soil Science Society.

2016 – Present Soil Science Society of America

2015 – Present American Society of Mining and Reclamation (ASMR)

Editorial boards/services

2018 - present: Member of Editorial Board, BIOCHAR

2013 – present: coordinating editor, Environmental Geochemistry and Health

Awards & Patent

2019 UQ’s Partners in Research Excellence Award (Resilient Environments) (Rio Tinto and QAL)

2017 SMI-Industry Engagement Award, University of Queensland

2015 SMI-Inaugural Bright Research Ideas Forum Award, University of Queensland

2014 SMI-RHD Supervision Award, University of Queensland

2015 Foliar fertilizer US 20150266786. In. (Google Patents). Huang L, Nguyen AV, Rudolph V, Xu G (equal contribution)

Dr Kobe's research interests are in protein structure and function, focussing particularly on proteins involved in the processes of infection and immunity.

The primary techniques used in the laboratory are X-ray crystallography and cryo-electron microscopy, combined with a plethora of other molecular biology, biophysical and computational techniques.

Current projects include:

• Structural basis of signalling by cooperative assembly formation (SCAF) in innate immunity and cell-death pathways, in particular Toll-like receptors and interleukin-1 receptors
• Structural basis of plant disease resistance - particularly plant NLRs and the correponding pathogen effector proteins
• Molecular and structural basis of function of proteins from pathogens (fungal, bacterial and viral pathogens)

Not only do soils provide humans with 98.8% of our food, they also provide humanity with a broad range of other services such as carbon storage and greenhouse gas regulation. However, soils are also the most complex ecosystem in the world – it is this complexity that forms the basis of Peter's research at The University of Queensland (UQ). As a Soil Scientist, Peter is actively involved in the management and conservation of soil; one of the basic elements which sustain life. Whilst soil takes hundreds or thousands of years to form, it can be destroyed in a matter of years if not managed correctly. The management and conservation of the soil-environment is arguably the biggest challenge we face as we move into the future. We need new ideas to solve the world’s problems.

The aim of Peter's research is to increase plant growth in soils that are degraded and infertile, both in Australia and developing countries. He has a demonstrated ability to lead outstanding research programs across a range of inter-connected themes, spanning in scale from fundamental research to landscape-scale projects, with this demonstrating a unique ability to link industry partners with high quality research. Peter's research spans the areas of agricultural production, water chemistry, and waste disposal, currently focusing on (i) the global development of advanced and novel methodologies for investigation of plants and soils, (ii) behaviour of nutrients, fertilizers, and carbon in soils, and (iii) plant growth in degraded soils.

Peter is Past President of Soil Science Australia (QLD), a former ARC Future Fellow, recipient of the JK Taylor Gold Medal in Soil Science (2018), and recipient of the CG Stephens Award in Soil Science (2005).

Yasmine Lam is a researcher within the Queensland Alliance for Agriculture and Food Innovation at the University of Queensland. Her main areas of interest are using biotehnological tools like gene editing to dissect key traits of interest in cereals to further understand the molecular mechanisms that underpin phenotypes. Currently, her main focus is dissecting various components of plant architecture using CRISPR and a holistic phenotyping approach to further disseminate the influences these genes can have for future trait improvement in key cereal crops. Additionally, she endeavours to form more integrative approaches to crop improvement by looking at ways to integrate biotechnological and molecular techniques to improve current breeding technologies.

Dr. Guoquan Liu has more than ten years experience in sorghum tissue culture and genetic transformation. He developed a highly efficient sorghum particle transformation system in 2012. Since then, hundreds of transgenic plants have been regenerated from tens of constructs that are invoved in plant disease resistant genes (e.g. Lr34), report gene (gfp), specific-promoters (e.g. alpha- beta- kafirin, A2, LSG), G proteins etc.. He has trained many students how to transform sorghum including honor students, master students, and PhD students.

He has focused on improving sorghum grain yield and grain quality through biotechnologies including genetic transformation, genome-editing, synthetic biology, and plant apomixis.

Professor Lovelock's research focusses on the influence of environmental change, including climate change, on the ecology of coastal and marine plant communities and in providing knowledge to underpin conservation and restoration of these ecosystems now and in the future.

Karen is a Research Fellow in QAAFI at the University of Queensland whose research group is focused on the improvement of crops using genomic and biotechnological tools. She began her scientific journey through obtaining an Honours BSc in Pharmaceutical sciences (Genomics) from the University Ottawa where her honours focused on the impact of RNA stability in cold-treated wheat seedlings. From there she joined Ian Godwin's group in SAFS at UQ to start her PhD in developing and optimising biotechnological tools in sorghum to understand food and feed quality. As a research fellow, she has applied these initiatives to numerous tropical grain crops and using these tools to study a range of traits focused on understanding key developmental pathways.

Dr. Melanie Oey is currently Research Officer at the Institute for Molecular Bioscience in the Group of Prof. Ben Hankamer. She was born in Berlin, Germany, and went to the University of Potsdam to study Biochemistry. During her studies she worked at the Max-Planck Institute of Molecular Plant Physiology in Golm, Germany, where she also received her Ph.D. in 2009 for her work on the production of lysin antibiotics in tobacco plants. In the same year she came to Australia to work at the University of Queensland, and has since then developed new technologies which are base for the newly launched "Breakthrough Science Program in Algal Biomedicine" at the Institute for Molecular Bioscience.

Her research interestes are:

- High value product production (e.g. vaccines, antibiotics, pain killer) in Algae via chloroplast and nuclear transformation

- Improvement of bio-hydrogen production from microalgae

- Development of new molecular tools for microalgae

Her work has been funded by the Australian Research Council (ARC), the National Health and Medical Research Council (NHMRC) and the German Academic Exchange Service (DAAD).

Research interest: Monitoring ecosystem health of coral reefs and seagrass habitats, integrating field and remote sensing image datasets, and the developing applied cost-effective mapping and monitoring approaches. Developed approaches have been adopted as standard practice globally, making a difference in conservation of these valuable habitats. The long term monitoring studies at Heron and Moreton Bay formed the basis for the development of mapping and monitoring over time and space at local to global scale. See here major research impact

Major projects:

• Long term monitoring of benthic composition at Heron Reef (2002-ongoing).
• Long term monitoring of seagrass composition and abundance in Moreton bay Marine Park (2000-ongoing).
• Smart Sat CRC Hyperspectral Remote Sensing of Seagrass and Coral Reefs 2023-2027.
• Developement of Underwater Field Spectrometry and Benthic Photo Collection and Analysis
• 3D GBR Habitat Mapping Project 2015 - ongoing:
• Global habitat mapping project 2019-2023 Allen Coral Atlas .

Current position: Associate Professior in Marine Remote Sensing leading the Marine Ecosystem Monitoring Lab. . Academic Director Heron Island Research Station and affiliated researchers with Centre for Marine Science and Centre for Biodiversity and Conservation Science

Capacity Building and Citizen Science: Capacity: under/post graduate courses; Msc/PhD supervision, workshops/courses; Remote Sensing Educational Toolkit, and online courses (e.g. TNC).Strong supporter of citizen science based projects, as trainer, organiser and advisor for Reef Check Australia, CoralWatch, Great Reef Census and UniDive.

Susanne leads a vibrant team researching natural ecosystems and agroecosystems focussed on plants, microbes and soil. This aims to advance the circular nutrient economy, the restoration of degraded soils and landscapes, and the sustainable use of Australia's flora in research that is led by Indigenous experts and communities.

Funded PhD and MPhil positions are available in the (i) Bushfood project and the (ii) Next-generation fertilisers project and soil ameliorants project. Honours and Masters projects are available in all active projects. Please register your interest emailing Susanne.Schmidt@uq.edu.au

Active projects:

• Climate smart agriculture: quantifying the benefits of cultural burning in QLD grazing lands (led by Firesticks Alliance, funded by the AustDAF)
• A Deadly Solution: Traditional Knowledge and Western Science for an Indigenous-led Bushfood Industry (ARC Discovery-Indigenous)
• Realising Smart Compost Formulations (End Food Waste CRC)
• Next-generation fertilisers and soil ameliorants (ARC Industry Transformation Training Centre 'Transforming Biosolids')

Completed recent projects

• Environmentally responsive bio-composite fertilisers
• Ecofriendly fertilisers for sustainable farming
• Effective microbial biostimulants in horticulture
• New technologies and management: transforming nitrogen use efficiency in cane production
• Recycled phosphorus from waste streams as efficient sources for agriculture
• License to farm - nitrogen use efficiency in sugarcane production
• Developing sugarcane-legume companion cropping to reduce greenhouse gas emissions
• Spinifex desert grass - ecophysiology and nano-cellulose production for novel biomaterials
• The role of soil microbes to restore soil carbon in tropical reforestation
• Soil carbon sequestration in the Cooloola biosphere chronosequence
• Advancing Livestock Waste as Low Emission-High Efficiency Fertilizers
• Ecogenomic profiling of Queensland sugarcane soils

Dr Millicent Smith is a Senior Lecturer in Crop Physiology at The University of Queensland. Her research is focused on understanding the physiological mechanisms that underpin yield stability and quality in grain legumes. Millicent works closely with breeders, both in Australia and overseas, to develop improved knowledge on abiotic stress adaptation and tools to accelerate genetic gain. Dr Smith leads a national research project funded by the Grains Research and Development Corporation focused on deploying novel phenotyping and genomics approaches to fast-track the development of new chickpea varieties that display lower yield loss in response to high temperature. Millicent is passionate about training the next generation of plant scientists. She leads a growing research team of postdoctoral scientists, postgraduate and undergraduate research students and has been awarded for her innovative teaching approaches applied to large undergraduate and postgraduate courses.