Dr Moni holds a PhD in Artificial Intelligence & Data Science in 2014 from the University of Cambridge, UK followed by postdoctoral training at the University of New South Wales, University of Sydney Vice-chancellor fellowship, and Senior Data Scientist at the University of Oxford. Dr Moni then joined UQ in 2021. He also worked as an assistant professor and lecturer in two universities (PUST and JKKNIU) from 2007 to 2011. He is an Artificial Intelligence, Computer Vision & Machine learning, Digital Health Data Science, Health Informatics and Bioinformatics researcher developing interpretable and clinical applicable machine learning and deep learning models to increase the performance and transparency of AI-based automated decision-making systems.
His research interests include quantifying and extracting actionable knowledge from data to solve real-world problems and giving humans explainable AI models through feature visualisation and attribution methods. He has applied these techniques to various multi-disciplinary applications such as medical imaging including stroke MRI/fMRI imaging, real-time cancer imaging. He led and managed significant research programs in developing machine-learning, deep-learning and translational data science models, and software tools to aid the diagnosis and prediction of disease outcomes, particularly for hard-to-manage complex and chronic diseases. His research interest also includes developing Data Science, machine learning and deep learning algorithms, models and software tools utilising different types of data, especially medical images, neuroimaging (MRI, fMRI, Ultrasound, X-Ray), EEG, ECG, Bioinformatics, and secondary usage of routinely collected data.
I am currently recruiting graduate students. Check out Available Projects for details. Open to both Domestic and International students.
Dr Quan Nguyen is a Group Leader at the Institute for Molecular Bioscience (IMB), The University of Queensland. He is leading the Genomics and Machine Learning (GML) lab to study neuroinflammation and cancer-immune cells at single-cell resolution and within spatial morphological tissue context. His research interest is about revealing gene and cell regulators that determine the states of the complex cancer and neuronal ecosystems. Particularly, he is interested in quantifying cellular diversity and the dynamics of cell-cell interactions within the tissues to find ways to improve cancer diagnosis or cell-type specific treatments or the immunoinflammation responses that cause neuronal disease.
Using machine learning and genomic approaches, his group are integrating single-cell spatiotemporal sequencing data with tissue imaging data to find causal links between cellular genotypes, tissue microenvironment, and disease phenotypes. GML lab is also developing experimental technologies that enable large-scale profiling of spatial gene and protein expression (spatial omics) in a range of cancer tissues (focusing on brain and skin cancer) and in mouse brain and spinal cord.
Dr Quan Nguyen completed a PhD in Bioengineering at the University of Queensland in 2013, postdoctoral training in Bioinformatics at RIKEN institute in Japan in 2015, a CSIRO Office of Chief Executive (OCE) Research Fellowship in 2016, an IMB Fellow in 2018, an Australian Research Council DECRA fellowship (2019-2021), and is currently a National Health and Medical Research Council leadership fellow (EL2). He has published in top-tier journals, including Cell, Cell Stem Cell, Nature Methods, Nature Protocols, Nature Communications, Genome Research, Genome Biology and a prize-winning paper in GigaScience. In the past three years, he has contributed to the development of x8 open-source software, x2 web applications, and x4 databases for analysis of single-cell data and spatial transcriptomics. He is looking for enthusiastic research students and research staff to join his group.
Career Summary: 2009: PhD, University of Michigan, USA with training in cardiac physiology, modelling myocardial ischemia in vivo and in vitro, and development of therapeutic approaches for myocardial ischemia; 2009–2015: Postdoctoral Research Fellow, University of Washington, Institute for Stem Cell and Regenerative Medicine, USA with training in stem cell biology, genomics, genome editing, and cell therapeutics for ischemic heart disease; 2015–current: Group Leader, University of Queensland (UQ), Institute for Molecular Bioscience; 2022-current: Associate Professor, UQ; 2018–2021 and 2023-2026: National Heart Foundation Future Leader Fellow. Dr. Palpant’s research team has expertise in human stem cell biology, computational genomics, and cardiac physiology, which enables them to translate outcomes from cell biology and genomics to disease modelling, drug discovery, and preclinical modelling.
Nalini has more than 25 years’ experience in innovative design and delivery of medicine and health programs in several countries. Her medical education research focusses on curriculum and assessment design, digital and inclusive education, and integration of biomedical sciences into health professional programs. She has a particular interest in educational technologies (including AI) and cognitive load, and curricular approaches that support positive learning behaviour, wellbeing, critical thinking and professional development. Nalini's research also includes medical imaging diagnositics and the use of AI.
Nalini is the co-founder of the Health Universities Initiative, which frames a whole-of-university approach to student success and wellbeing. She has several awards (Faculty, Vice-Chancellor, Australian Award for University Teaching) for her contributions to higher education. Nalini is the Chair of the International Program for Anatomical Education (FIPAE) of the IFAA, and an Associate Editor of Anatomical Sciences Education (Impact Factor, 7.2). Nalini is a Board Member and Fellow of ANZAHPE, Fellow of the Scientia Education Academy, and Fellow of HERDSA.
Nalini currently supervises 5 PhD students in the following topics:
Health Advocacy in Medical Education: Evaluation of current practice and implications for medical programs
Cosmetic female surgery: A consumer-driven evaluation of demand and its implications for medical education
Fetal and Embryological Collections: A paradigm to examine the ethical practice of informed consent
Anatomical Education: The role of digital-based pedagogies in future practice
Liver and Gallbladder Imaging in Paediatric Patients: Developing a pipeline for diagnostic automation
Nalini currently supervises 4 reseach honours students on the following topics:
Relationship-based support interventions in medical programs
An evaluation of intersex education in medicine programs in Australia
Left ventricular compaction: evaluation of MRI diagnostic criteria
VR in biomedical sciences education: current scope of practice
Australian Institute for Bioengineering and Nanotechnology
Availability:
Available for supervision
Dr Giovanni Pietrogrande obtained his PhD from the University of Newcastle. Here he explored how different brain processes are affected by the activation of microglia, the immune cells resident within our brain. In particular his work shows that microglia mediated inflammation has a pivotal role in neuronal loss following brain ischemic injury, and in his work he developed and proposed a new, efficient and translatable treatment for the prevention of neuronal death called Low Oxygen Post Conditioning.
In late 2019 he joined the Stem Cell Engineering lab at the Australian Institute for Bioengineering and Nanotechnology in Queensland. Now he uses and improves cutting-edge techniques for CRISPR-Cas9 mediated gene editing to modify the genome of induced pluripotent stem cells and generate brain and spinal cord organoids to model neurological diseases and evaluate potential treatments.
Dr. Pietrogrande has also established collaborations with biotechs and startups, employing genetic engineering to modify cells for product development and organoid-based compound screening. Additionally, he provides consultancy services for Stemcore and Phenomics Australia, both UQ-based facilities, driving advancements in stem cell research.
Advanced Drug Delivery and Nanomedicine 1.Advanced drug delivery methods (controlled release dosage forms such as tablets, granules and microspheres) 2. Biomaterials as next generation adjuvant for vaccine delivery 3. Surface modified nanomaterials (Silica, Polymer, Liposomes) 4. Programmable nanoparticales for oral drug delivery and targeting 5. Translocation of nanoparticles after oral drug delivery (In-vitro and In-vivo)
Qualifications
Master of Pharmaceutical Science, Gujarat University
I am a Principal Investigator (PI) and a senior research officer (SRO) at Mater research – UQ with excellent clinical and research laboratory skills and expertise in conducting and analyzing laboratory assays and resolving complex research and clinical laboratory problems. I can describe myself as determined, reliable, studious, conscientious, attentive, industrious, diligent, and focused on the timely, quality completion of all lab procedures. I am able to work well under pressure and time constraints within high-volume environments both independently and in collaboration within a team. I am also a highly self-motivated and career-oriented individual with a genuine interest in addressing cancer molecular mechanisms with the goal of developing novel cancer therapeutics and immunotherapy focusing on tumor microenvironment, immunoregulation and signaling pathways in cancer and metastasis.
Dr Ben Ross is a chemist with interests in medicinal chemistry, computer-aided drug design, virtual screening, synthetic chemistry, enzyme inhibitors, ion channel modulators, antivirals, amyloid diseases, neurodegenerative diseases, and cancer.
Follow Dr Ben Ross and his team on Twitter: @RossChemLab ||| Google Scholar: Benjamin P. Ross ||| ResearcherID: A-9573-2012 ||| ORCID: 0000-0002-1899-8484 ||| Scopus Author ID:7401608823 ||| Group Web Page: www.drbenross.com
Research Interests
The main focus of Dr Ben Ross's research is the application of computer-aided drug design and synthetic chemistry to create new drug candidates for cancer, viral infections, and neurodegenerative diseases such as Alzheimer’s disease. His team's novel molecules are evaluated using a variety of biochemical, biophysical, and cell-based screening assays, as well as animal models of disease, both within their lab and in partnership with local and international collaborators. Consideration of drug-likeness is an integral part of the design process, since good ADMET properties are crucial for their molecules to reach the clinic.
Biography
Ben Ross graduated with a First-Class Honours Degree in Chemistry (1999) and then moved to the UQ School of Pharmacy where he gained a Doctorate in the field of Medicinal Chemistry (2004). He worked in the School of Molecular and Microbial Sciences as a Postdoctoral Research Fellow with Dr Ross McGeary for two years (2004-2006) during which he completed the synthesis of a variety of biologically useful molecules. In June 2006 Ben was appointed to a Lectureship within the UQ School of Pharmacy. In the first half of 2012 he was a Guest Researcher in the Department of Biochemistry and Structural Biology, Lund University, Sweden. In 2013 Ben was promoted to Senior Lecturer at UQ. A general theme of his research is medicinal chemistry, specifically the application of synthetic chemistry and molecular modeling to discover novel molecules with application as drugs or tools for research. Ben's team has published extensively in journals having a moderate-to-high impact factor in their specialised area of research (e.g. Journal of Medicinal Chemistry, Nanoscale, Food Chemistry).
Selected Primary Research Articles
Bifunctional Succinylated ε-Polylysine Coated Mesoporous Silica Nanoparticles for pH-Responsive and Intracellular Drug Delivery Targeting the Colon. C.T.H. Nguyen, R.I. Webb, L.K. Lambert, E. Strounina, E.C. Lee, M.-O. Parat, M.A. McGuckin, A. Popat, P.J. Cabot, B.P. Ross*. ACS Applied Materials & Interfaces 2017, 9, 9470-9483. doi:10.1021/acsami.7b00411 (2016 JIF 7.5, Quartile 1)
Discovery and Structure-Activity Relationships of a Highly Selective Butyrylcholinesterase Inhibitor by Structure-Based Virtual Screening. S.N. Dighe, G.S. Deora, E. De la Mora, F. Nachon, S. Chan, M.-O. Parat, X. Brazzolotto*, B.P. Ross*. Journal of Medicinal Chemistry 2016, 59, 7683-7689. doi:10.1021/acs.jmedchem.6b00356 (Featured on the front cover of the journal: http://pubs.acs.org/toc/jmcmar/59/16) (2016 JIF 6.3, Quartile 1)
GAG mimetic functionalised solid and mesoporous silica nanoparticles as viral entry inhibitors of herpes simplex type 1 and type 2 viruses. E.C. Lee, N. Davis-Poynter*, C.T.H. Nguyen, A.A. Peters, G.R. Monteith, E. Strouina, A. Popat*, B.P. Ross*. Nanoscale 2016, 8, 16192-16196. doi:10.1039/C6NR03878F (2016 JIF 7.4, Quartile 1)
Metal chelation, radical scavenging and inhibition of Aβ42 fibrillation by food constituents in relation to Alzheimer’s disease. S. Chan, S. Kantham, V.M. Rao, M.K. Palanivelu, H.L. Pham, P.N. Shaw, R.P. McGeary, B.P. Ross*. Food Chemistry 2016, 199, 185-194. doi:10.1016/j.foodchem.2015.11.118 (2016 JIF 4.5, Quartile 1)
"Click" Assembly of Glycoclusters and Discovery of a Trehalose Analogue that Retards Aβ40 Aggregation and Inhibits Aβ40-induced Neurotoxicity. H. Rajaram, M.K. Palanivelu, T.V. Arumugam, V.M. Rao, P.N. Shaw, R.P. McGeary, B.P. Ross*. Bioorganic & Medicinal Chemistry Letters 2014, 24, 4523-4528. doi:10.1016/j.bmcl.2014.07.077 (2014 JIF 2.4, Quartile 3)
Enzyme-Responsive Controlled Release of Covalently Bound Prodrug from Functional Mesoporous Silica Nanospheres. A. Popat, B.P. Ross, J.Liu, S. Jambhrunkar, F. Kleitz*, S.Z. Qiao*. Angewandte Chemie International Edition 2012, 51, 12486-12489. doi:10.1002/anie.201206416 (2010 JIF 13.7, Quartile 1)
PhD vacancies - PhD opportunities
Australian and international students with backgrounds in chemistry, biochemistry, and pharmacy are encouraged to contact Dr Ben Ross to discuss possible Honours or PhD projects and scholarships.
Sources of funding include: UQ Scholarships; NHMRC Postgraduate Scholarships; Endeavour Scholarships and Fellowships; Malaysia Ministry of Higher Education (MOHE) Scholarships; Ministry of Education Saudi Arabia; and the China Scholarship Council (CSC), as well as many other funding schemes. Contact Dr Ben Ross via email to discuss the best strategy to obtain a scholarship.
Teaching and Service Activities
Dr Ben Ross is the Research Higher Degrees Coordinator for the School of Pharmacy, and an Academic Advisor for Year 2 of the BPharm(Hons) program. He also coordinates and teaches within the following undergraduate BPharm(Hons) courses:
Dr Abbas Shafiee is a tissue engineering & regenerative medicine scientist interested in translational cell-based and tissue engineering strategies to treat human diseases.
Dr Shafiee completed his PhD in Professor Kiarash Khosrotehrani’s laboratory on stem cell biology. His research career during his PhD had key contributions to delineating endothelial niche and vascular stem cells in the human placental tissues, including the seminal discovery of an entirely new stem cell population, coined as ‘Meso-Endothelial Bipotent Progenitor’ and the identification of key driver signatures for endothelial and bipotential progenitor function (Stem Cell Reports 2018; The FASEB Journal 2017; Stem Cells 2016; Stem Cells Translational Medicine 2015).
In 2016, he joined Distinguished Professor Dietmar Hutmacher’s team and conducted multiple projects on cancer and bone tissue engineering. Dr Shafiee has developed innovative tissue engineered models intersecting concepts from stem cell biology, cancer, and tissue engineering to study species-specific cancer bone metastasis at an unprecedented level of detail. The results of his research have been published in: International Journal of Cancer 2018; Cancers 2018; Biomaterials 2018; Bone Research 2019; Biomaterials 2019; Applied Materials Today 2020; Biomaterials 2020; and Advanced Therapeutics 2020. Utilizing the tissue engineering concept, he was able to better understand the mechanisms of human cancer bone metastasis. Additionally, he was successful in obtaining project grants, including a project grants from Cooperative Research Centers (CRC), and developed a biomimetically designed scaffolds and investigated the interactions of multipotent mesenchymal stem/stromal cell and skin progenitors with 3D printed scaffolds. The application of 3D printed constructs in acute wound models decreased wound contracture and led to a significantly improved skin regeneration.
Dr Shafiee joined Metro North Health (MNH, Queensland Health) in 2020 and started a research program to develop, implement, and evaluate the applications of 3D printing, scanning, cell therapies, and biofabrication technologies in skin wound settings, and dermatology research. Using the 3D printing and organoid technologies he could develop new approaches to enhances physiological wound closure with reduced scar tissue formation (Biomaterials 2021, Small 2021, Advanced Healthcare Materials 2021, Advanced Healthcare Materials 2022) and advance the deramtology research (Advanced healthcare materials 2022, and Small 2024). Dr Shafiee is part of a national program, aiming to develop biofabrication technology to treat skin wounds (funded by MRFF, NHMRC). His groundbreaking organoid research resulted in establishing an international Consortium of Organoid Research in Dermatology, leveraging organoid technology to advance the understanding and treatment of genetic skin diseases. Dr Shafiee has supervised over 10 Masters and PhD students. Honours, Masters and PhD projects are available, please feel free to contact him.
Australian Institute for Bioengineering and Nanotechnology
Availability:
Available for supervision
Media expert
Dr Abu Sina is currently an NHMRC Emerging Leader Fellow at the Center for Personalized Nanomedicine, Australian Institute for Bioengineering & Nanotechnology (AIBN), The University of Queensland, Australia. Prior to this, he served as a Visiting Scientist at the Dana-Farber Cancer Institute, Harvard University, and as a Visiting Research Fellow at the Irving Cancer Research Center, Columbia University, NY, USA.
Dr. Sina has earned both national and international acclaim for his notable contributions to advancing translational-focused nano-diagnostic technologies with a focus on early cancer detection from liquid biopsies. He is one of the few leaders in the world who is driving the liquid biopsy-based multi-cancer early detection (MCED) test program. He has had several media appearances so far which include interviews on national (Channel 9, Channel 7, ABC News, Fox News, etc.) and international Television (CBC News, CTV News Canada, etc.) and Radio (4EB, 4BC, ABC Perth, ABC Sunshine coast, SBS) outlets.
Actively participating in scholarly discussions, Dr. Sina has served as a Keynote Speaker, Invited Speaker, and Session Chair at various national and international conferences and seminars. His commitment to excellence has resulted in several prestigious awards, including the Metrohm-EDRACI Young Electrochemist Award 2021, the Queensland Health and Medical Research Award 2019 from the Queensland State Government of Australia, and recognition as a Fellow of the International Association of Advanced Materials.
Central to his aspirations is a vision to develop point-of-care diagnostic technologies with the potential to revolutionize early disease detection, thereby enhancing overall quality of life.
My research interests are centred around the structure and function of venom and silk polypeptides produced by arthropods, and their use in biotechnology and medicine. I am a Postdoctoral Fellow in the King laboratory in the Institute for Molecular Bioscience, the University of Queensland, Australia. Currently, I am investigating the composition, function and evolution of neglected insect venoms produced by assassin bugs (Hemiptera: Reduviidae), robber flies (Diptera: Asilidae) and nettle caterpillars (Lepidoptera: Limacodidae).
