Dr Mohammad Ali Moni
Dr

Mohammad Ali Moni

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Background

Dr Moni holds a PhD in Artificial Intelligence & Data Science in 2014 from the University of Cambridge, UK followed by postdoctoral training at the University of New South Wales, University of Sydney Vice-chancellor fellowship, and Senior Data Scientist at the University of Oxford. Dr Moni then joined UQ in 2021. He also worked as an assistant professor and lecturer in two universities (PUST and JKKNIU) from 2007 to 2011. He is an Artificial Intelligence, Computer Vision & Machine learning, Digital Health Data Science, Health Informatics and Bioinformatics researcher developing interpretable and clinical applicable machine learning and deep learning models to increase the performance and transparency of AI-based automated decision-making systems.

His research interests include quantifying and extracting actionable knowledge from data to solve real-world problems and giving humans explainable AI models through feature visualisation and attribution methods. He has applied these techniques to various multi-disciplinary applications such as medical imaging including stroke MRI/fMRI imaging, real-time cancer imaging. He led and managed significant research programs in developing machine-learning, deep-learning and translational data science models, and software tools to aid the diagnosis and prediction of disease outcomes, particularly for hard-to-manage complex and chronic diseases. His research interest also includes developing Data Science, machine learning and deep learning algorithms, models and software tools utilising different types of data, especially medical images, neuroimaging (MRI, fMRI, Ultrasound, X-Ray), EEG, ECG, Bioinformatics, and secondary usage of routinely collected data.

  • I am currently recruiting graduate students. Check out Available Projects for details. Open to both Domestic and International students.

Availability

Dr Mohammad Ali Moni is:
Available for supervision

Fields of research

Applications in life sciences Applied computing Artificial intelligence Biological Sciences Biomedical and Clinical Sciences Biomedical engineering Cardiovascular medicine and haematology Clinical sciences Cognitive and computational psychology Computer vision and multimedia computation Cybersecurity and privacy Data management and data science Distributed computing and systems software Engineering Health Sciences Human-centred computing Information and Computing Sciences Informetrics Library and information studies Machine learning Medical biotechnology Mobile computing Nanotechnology Neurosciences Other engineering Psychology Sports science and exercise

Qualifications

  • Doctor of Philosophy, University of Cambridge

Research interests

  • Artificial Intelligence, Computer Vision, Machine Learning, Deep-Learning

  • Medical Imaging, Medical Image Analysis, Neuro Imaging

  • Digital Health, Data Science, Health Informatics, Clinical Informatics

  • Data Mining, Text Mining, Natural Language Processing

  • Bioinformatics, Systems Biology, Computational Biology

Research impacts

During the last 5 years he has puvblished over 200 journal articles in many top tier journals including The Lancet, Jama Oncology. The impact of his research is evidenced by the high number of citations to his work (>12000 citations, i10-index 157 and an h-index of 50 according to Google Scholar), received $1.89 M as CI-A (8.9 M total) and awards including :

  • Best Impact Award in International Conference on Applied Intelligence and Informatics, UK July 30-31, 2021
  • University of Wollongong Engineering & information science Distinguished Early Career Fellowship.2019-2020
  • Certara-Monash Fellowship Awarded ($2,00,000), Certara Australia Pty. Ltd, 2019
  • Seed funding from two companies Karte Ltd (Japan) and iHealthOmics Ltd (Hong Kong) to develop AI-based health-care related software products. Received seed funding ($40,000) from Karte Ltd. 2018-2020
  • USyd DVC Research Fellowship ($50,000), University of Sydney2017-2020
  • The Ridley Ken Davies Award ($50,000)-- utilising the research data obtained through Dubbo Osteoporosis Epidemiological Study, Ridley Corporation, Australia 2016
  • Travel award to attend ANZBMS Conference, Australia, 2016
  • Best student paper award in international conference- IDBSS2014, UK2014
  • Travel award to attend NIMBioS Modeling, University of Tennessee, USA. 2013
  • The Cambridge Commonwealth, European & International Trust award, The Commonwealth Trust, UK 2011

Search Professor Mohammad Ali Moni’s works on UQ eSpace

436 works between 2012 and 2026
All (436) Book (2) Journal Article (375) Conference Publication (53) Book Chapter (6)

1 - 20 of 436 works

2026

Journal Article

Field pathogenomics and evolutionary conservation unveil CRISPR-targetable susceptibility genes for wheat blast resistance

Khayer, Abul, Ye, Peng, Eti, Fatiha Sultana, Sakif, Tahsin Islam, Azad, Rojana Binte, Ali, Julfikar, Gupta, Dipali Rani, Asuke, Soichiro, Pan, Qinghua, Moni, Mohammad Ali, Kang, Houxiang and Islam, Tofazzal (2026). Field pathogenomics and evolutionary conservation unveil CRISPR-targetable susceptibility genes for wheat blast resistance. Scientific Reports, 16 (1) 5677, 1. doi: 10.1038/s41598-026-36547-6

Field pathogenomics and evolutionary conservation unveil CRISPR-targetable susceptibility genes for wheat blast resistance

2026

Journal Article

Tuberculosis notification trends and treatment outcomes in Bangladesh: findings from a National TB Program data, 2019–2021

Sujan, Mohammad Julhas, Rahman, Afzalur, Taleb, Abu, Khan, Ahmadul Hasan, Sultana, Shanjida Rahman, Moni, Mohammad Ali, Reza, Hasan Mahmud, Khan, Md Hasinur Rahman and Hossain, Ahmed (2026). Tuberculosis notification trends and treatment outcomes in Bangladesh: findings from a National TB Program data, 2019–2021. BMC Infectious Diseases, 26 (1) 464. doi: 10.1186/s12879-026-12664-5

Tuberculosis notification trends and treatment outcomes in Bangladesh: findings from a National TB Program data, 2019–2021

2026

Journal Article

A positional transformer-based encoder-decoder network for segmentation of the gastrointestinal tract

Nobel, SM Nuruzzaman, Swapno, S M Masfequier Rahman, Azad, AKM and Moni, Mohammad Ali (2026). A positional transformer-based encoder-decoder network for segmentation of the gastrointestinal tract. Expert Systems with Applications, 322 132260, 132260. doi: 10.1016/j.eswa.2026.132260

A positional transformer-based encoder-decoder network for segmentation of the gastrointestinal tract

2026

Journal Article

Transparent deep learning for medicinal plant recognition: A hybrid CNN–ViT approach with explainable AI on BDHerbalPlants

Khandaker, Sunzil, Rahman, Md Mizanur, Azad, AKM, Moni, Mohammad Ali and Hossain, Md. Ali (2026). Transparent deep learning for medicinal plant recognition: A hybrid CNN–ViT approach with explainable AI on BDHerbalPlants. Smart Agricultural Technology, 14 101862, 101862-14. doi: 10.1016/j.atech.2026.101862

Transparent deep learning for medicinal plant recognition: A hybrid CNN–ViT approach with explainable AI on BDHerbalPlants

2026

Journal Article

Decentralized LoRA augmented transformer with multi-scale feature learning for secured eye diagnosis

Borno, Md. Naimur Asif, Shovon, Md Sakib Hossain, Sikder, MD Hanif, Rimi, Iffat Firozy, Alahmadi, Tahani Jaser and Moni, Mohammad Ali (2026). Decentralized LoRA augmented transformer with multi-scale feature learning for secured eye diagnosis. Knowledge-Based Systems, 343 115948, 115948. doi: 10.1016/j.knosys.2026.115948

Decentralized LoRA augmented transformer with multi-scale feature learning for secured eye diagnosis

2026

Journal Article

DREAM: A novel explainable neural network for detecting sleep apnea using single-lead ECG signals

Akter, Sanjida, Masud, Md. Akmol, Promi, Mst. Sanzida Islam, Sultana, Nadia, Ahmed, Maruf, Rahman, Md. Mahmudur, Yousuf, Mohammad Abu, Aloteibi, Saad and Moni, Mohammad Ali (2026). DREAM: A novel explainable neural network for detecting sleep apnea using single-lead ECG signals. Biomedical Signal Processing and Control, 114 109291, 109291-114. doi: 10.1016/j.bspc.2025.109291

DREAM: A novel explainable neural network for detecting sleep apnea using single-lead ECG signals

2026

Journal Article

A Weighted Federated Learning Framework for Privacy-Preserving EEG-Based Diagnosis of Major Depressive Disorder

Parvej, Rahat, Kamal, A.H.M., Bulbul, Abdullah Al-Mamun, Aloteibi, Saad and Moni, Mohammad Ali (2026). A Weighted Federated Learning Framework for Privacy-Preserving EEG-Based Diagnosis of Major Depressive Disorder. Signal Processing 110670, 110670. doi: 10.1016/j.sigpro.2026.110670

A Weighted Federated Learning Framework for Privacy-Preserving EEG-Based Diagnosis of Major Depressive Disorder

2026

Journal Article

Global burden of lower respiratory infections and aetiologies, 1990–2023: a systematic analysis for the Global Burden of Disease Study 2023

Sirota, Sarah Brooke, Bender, Rose Grace, Dominguez, Regina-Mae Villanueva, Movo, Amanda, Swetschinski, Lucien R, Araki, Daniel T, Han, Chieh, Wool, Eve E, He, Jiawei, Carter, Austin, A.J. Jabbar, Ahmed, Aalipour, Mohammad Amin, Aalruz, Hasan, Abbasi Dolatabadi, Zahra, Abbastabar, Hedayat, Abd ElHafeez, Samar, Abdalla, Ashraf Nabiel, Abdalla, Mohammed Altigani, Abdullah,, Abdallah, Emad M., Abdel Razeq, Nadin M.I., Abdelkader, Atef, Abd-Elsalam, Sherief, Abdelwahab, Siddig Ibrahim, Abdoun, Meriem, Abdous, Arman, Abdrabou, Mostafa M., Abdul Aziz, Jeza Muhamad, Abdulah, Deldar Morad ... Kyu, Hmwe Hmwe (2026). Global burden of lower respiratory infections and aetiologies, 1990–2023: a systematic analysis for the Global Burden of Disease Study 2023. The Lancet Infectious Diseases, 26 (4), 343-361. doi: 10.1016/s1473-3099(25)00689-9

Global burden of lower respiratory infections and aetiologies, 1990–2023: a systematic analysis for the Global Burden of Disease Study 2023

2026

Journal Article

RGNN3D: a hybrid radiomic graph neural network for 3D MRI glioma grading

Ali, Md Aiyub, Hossain, Md Shakhawat, Shuva, Taslima Ferdaus, Almoyad, Muhammad Ali Abdullah, Orka, Nabil Anan, Khan, Risala Tasin, Kaiser, M. Shamim, Rahman, Md Tanvir and Moni, Mohammad Ali (2026). RGNN3D: a hybrid radiomic graph neural network for 3D MRI glioma grading. Knowledge-Based Systems, 337 115343, 1-11. doi: 10.1016/j.knosys.2026.115343

RGNN3D: a hybrid radiomic graph neural network for 3D MRI glioma grading

2026

Journal Article

Deep learning for ECG-based cardiovascular disease diagnosis: a systematic review and meta-analysis

Bulbul, Abdullah Al-Mamun, Awal, Md. Abdul, Mahendran, Niruthikha, Islam, Sheikh Mohammed Shariful, Pogrebna, Ganna, Ross, Allen G. and Moni, Mohammad Ali (2026). Deep learning for ECG-based cardiovascular disease diagnosis: a systematic review and meta-analysis. Artificial Intelligence Review. doi: 10.1007/s10462-025-11479-1

Deep learning for ECG-based cardiovascular disease diagnosis: a systematic review and meta-analysis

2026

Journal Article

Global, regional, and national burden of Chagas disease, 1990–2023: a systematic analysis for the Global Burden of Disease Study 2023

Cousin, Ewerton, Nascimento, Bruno Ramos, Whisnant, Joanna L, Zimsen, Stephanie R M, Harris, Ashley Ann, Machado, Isis Eloah, Martins-Melo, Francisco Rogerlândio, Demacq, Caroline, Perel, Pablo, Geissbühler, Yvonne, Abbasi, Madineh, Abdel-Hameed, Reda, Abdul Aziz, Jeza Muhamad, Abedi, Armita, Abramov, Dmitry, Abu-Gharbieh, Eman, Adegboye, Oyelola A, Afzal, Muhammad Sohail, Afzal, Saira, Ahmad, Sajjad, Ahmed, Ayman, Akinosoglou, Karolina, Al Awaidy, Salah, Ali, Syed Shujait, Almazan, Joseph Uy, Alshahrani, Najim Z., Alvis-Zakzuk, Nelson J, Anvari, Saeid, Arab, Juan Pablo ... GBD 2023 Chagas Disease and RAISE Study Collaborators (2026). Global, regional, and national burden of Chagas disease, 1990–2023: a systematic analysis for the Global Burden of Disease Study 2023. The Lancet Infectious Diseases, 26 (3), 284-301. doi: 10.1016/s1473-3099(25)00562-6

Global, regional, and national burden of Chagas disease, 1990–2023: a systematic analysis for the Global Burden of Disease Study 2023

2026

Journal Article

3D MRI Reconstruction and Brain Tumor Diagnosis Using Deep Learning with Explainable AI

Hasan, Md Rakhibul, Rudra, Shrawman Majumder, Karmoker, Nayon, Yousuf, Mohammad Abu, Akhter, Jesmin, Al-Moisheer, Asmaa Soliman, Alyami, Salem A. and Moni, Mohammad Ali (2026). 3D MRI Reconstruction and Brain Tumor Diagnosis Using Deep Learning with Explainable AI. Expert Systems with Applications, 315 131513, 131513-315. doi: 10.1016/j.eswa.2026.131513

3D MRI Reconstruction and Brain Tumor Diagnosis Using Deep Learning with Explainable AI

2026

Journal Article

An explainable deep learning model for mulberry leaf classification and disease detection

Nobel, S.M. Nuruzzaman, Tasir, Md All Moon, Sultana, Shirin, Al-Moisheer, Asmaa Soliman and Moni, Mohammad Ali (2026). An explainable deep learning model for mulberry leaf classification and disease detection. Engineering Applications of Artificial Intelligence, 165 113470, 113470. doi: 10.1016/j.engappai.2025.113470

An explainable deep learning model for mulberry leaf classification and disease detection

2026

Journal Article

Explainable AI-driven hybrid deep learning framework for accurate skin cancer diagnosis

Al Sakib, Abdullah, Swapno, SM. Masfequier Rahman, Ahamed, Fahim, Mohiuddin, Arafath Bin, Bhuiyan, Md Imranul Hoque, Khan, Shakil, Khushbu, Katura Gania, Haque, Rezaul, Alahmadi, Tahani Jaser and Moni, Mohammad Ali (2026). Explainable AI-driven hybrid deep learning framework for accurate skin cancer diagnosis. DIGITAL HEALTH, 12 20552076261438923, 20552076261438923-12. doi: 10.1177/20552076261438923

Explainable AI-driven hybrid deep learning framework for accurate skin cancer diagnosis

2026

Journal Article

Deep ensemble of multi-head attention CNNs for histopathological image-based of lung and colon cancer diagnosis

Rahman, A. K. Z Rasel, Swapno, S M Masfequier Rahman, Raha, Avi Deb, Biswas, Sujit, Khan, Shakil, Khushbu, Katura Gania, Reza, Ahmed Wasif, Bairagi, Anupam Kumar, Aloteibi, Saad and Moni, Mohammad Ali (2026). Deep ensemble of multi-head attention CNNs for histopathological image-based of lung and colon cancer diagnosis. DIGITAL HEALTH, 12 20552076261444271. doi: 10.1177/20552076261444271

Deep ensemble of multi-head attention CNNs for histopathological image-based of lung and colon cancer diagnosis

2026

Journal Article

A novel stacking based classifier for the identification of antifreeze protein using latent semantic analysis

Rahman, Ashikur, Abdulrazak, Lway Faisal, Ali, Mamun, Ahmed, Kawsar, Bui, Francis M., Chen, Li, Mahmud, Imran, Bhuiyan, Touhid and Moni, Mohammad Ali (2026). A novel stacking based classifier for the identification of antifreeze protein using latent semantic analysis. Intelligent Medicine, 6 (1), 69-80. doi: 10.1016/j.imed.2025.03.003

A novel stacking based classifier for the identification of antifreeze protein using latent semantic analysis

2026

Journal Article

Securing the Unseen: A Comprehensive Exploration Review of <scp>AI</scp> ‐Powered Models for Zero‐Day Attack Detection

Al Siam, Abdullah, Faruqui, Nuruzzaman, Azad, Akm and Moni, Mohammad Ali (2026). Securing the Unseen: A Comprehensive Exploration Review of AI ‐Powered Models for Zero‐Day Attack Detection. Expert Systems, 43 (3) e70217. doi: 10.1111/exsy.70217

Securing the Unseen: A Comprehensive Exploration Review of <scp>AI</scp> ‐Powered Models for Zero‐Day Attack Detection

2026

Journal Article

Leveraging explainable AI for sustainable agriculture: a comprehensive review of recent advances

Rajbongshi, Aditya, Johora, Fatema Tuz, Hossain, Arafat, Sarker, Md. Salauddin, Rahman, Md Habibur, Rahman, Md Wahidur, Alotaibi, Fahad T. and Moni, Mohammad Ali (2026). Leveraging explainable AI for sustainable agriculture: a comprehensive review of recent advances. Artificial Intelligence Review, 59 (3) 105, 3. doi: 10.1007/s10462-025-11459-5

Leveraging explainable AI for sustainable agriculture: a comprehensive review of recent advances

2026

Journal Article

Prevention and management of heart failure associated with type 2 diabetics in rural Australia

Ross, Allen G., Mondal, Utpal K., Mahmood, Shakeel, Astawesegn, Feleke H., Anyasodor, Anayochukwu E., Huda, M. Mamun, Thapa, Subash, Aychiluhm, Setognal B., Giri, Santosh, Rahman, Md. Ferdous, Shiddiky, Muhammad J. A., Moni, Mohammad Ali and Ahmed, Kedir Y. (2026). Prevention and management of heart failure associated with type 2 diabetics in rural Australia. Journal of Clinical Medicine, 15 (1) 304, 1-14. doi: 10.3390/jcm15010304

Prevention and management of heart failure associated with type 2 diabetics in rural Australia

2026

Journal Article

Deep3BPP: identification of blood-brain barrier penetrating peptides using word embedding feature extraction method and CNN-LSTM

Rahman, Md. Ashikur, Ali, Md Mamun, Ahmed, Kawsar, Mahmud, Imran, Bui, Francis M., Chen, Li and Moni, Mohammad Ali (2026). Deep3BPP: identification of blood-brain barrier penetrating peptides using word embedding feature extraction method and CNN-LSTM. IEEE Transactions on Artificial Intelligence, 7 (1), 562-570. doi: 10.1109/tai.2025.3567434

Deep3BPP: identification of blood-brain barrier penetrating peptides using word embedding feature extraction method and CNN-LSTM

Availability

Dr Mohammad Ali Moni is:
Available for supervision

Looking for a supervisor? Read our advice on how to choose a supervisor.

Available projects

  • Deep learning models development and application to the Neuro Imaging (MRI and fMRI)

    Magnetic resonance (MR) imaging has become an important non-invasive radiological modality for various clinical applications, such as stoke and cancer. Extracting meaningful clinical information without human interaction is a challenging task. Developing such automatic methods are important in order to reduce human errors and the time taken by clinicians.

    In this project, the student will develop novel deep learning algorithms to solve segmentation and detection problems from imaging that could possibly be deployed to MRI & fMRI scanners and may eventually used for diagnostic purposes. The project will involve applying computer vision and deep learning techniques to MR image processing and analysis.

  • Deep Leaning Model to identify Neuroimaging biomarkers

  • Deep Learning models to solve inverse problems utiling MRI/fMRI image

  • AI-based based model development for Magnetic Resonance Imaging

  • AI-based Model development for ECG/EEG study

Supervision history

Current supervision

  • Doctor Philosophy

    Coloured noise estimation using electroencephalogram data and deep-learning method for improvement of cognitive function

    Principal Advisor

    Other advisors: Associate Professor Asaduzzaman Khan

  • Doctor Philosophy

    Wearable devices and AI Models for Monitoring, Predicting and Assessment Post-stroke Recovery

    Principal Advisor

  • Doctor Philosophy

    Developing AI-based Discission Support System utilising multimodal data

    Principal Advisor

    Other advisors: Associate Professor Asaduzzaman Khan

  • Doctor Philosophy

    Robust and Explainable AI to Solve Clinical Problems

    Principal Advisor

    Other advisors: Associate Professor Asaduzzaman Khan

  • Doctor Philosophy

    Managing non-communicable diseases (NCDs) to achieve Universal Health Coverage (UHC) in South Asia: A case study from Bangladesh

    Associate Advisor

    Other advisors: Associate Professor Asaduzzaman Khan

Completed supervision

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