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Dr Kylie Agnew-Francis

Postdoctoral Research Fellow
School of Chemistry and Molecular Biosciences
Faculty of Science
Availability:
Not available for supervision
Media expert

I am a medicinal chemist and postdoctoral research fellow at the University of Queensland, Australia, where I obtained my BSc (Hons) with a major in organic chemistry in 2011. Following this, I worked at the Institute for Future Environments and later the Centre for Tropical Crops and Biocommodities at QUT, where I gained experience in analytical chemistry, as well as molecular biology and genetics. In 2015, I returned to UQ to begin my PhD in the design and synthesis of novel antifungals targeting invasive infection under the supervision of Prof. Craig Williams and Prof. Luke Guddat, which I completed in 2019. Since this time I have worked at the School of Chemistry and Molecular Biosciences as a Postdoctoral Research Fellow under the supervision of Prof. Craig Williams, Prof. Avril Robertson, and now Prof. James De Voss. Broadly, my research interests lie in the pursuit of drug design and development campaigns addressing difficult or under-researched clinical concerns, and in particular, the use of novel bioisosteric approaches to improve drugability and drug efficacy.

More recently, I have developed an interest in Australian mushroom species. Very little recorded knowledge on our endemic mushrooms species exists. My research in this space seeks to characterise the genetic and molecular features of Australian wood rot mushrooms, which are critical players in maintaining and restoring the health of our unique forests ecosystems. With this information we aim to better understand our fungal biodiversity and the ecological roles they play, and to explore their potential as a platform for the identification of new drug molecules.

Kylie Agnew-Francis
Kylie Agnew-Francis

Professor David Ascher

Deputy Associate Dean Research (Research Partnerships)
Faculty of Science
Professor in Biotechnology
School of Chemistry and Molecular Biosciences
Faculty of Science
Availability:
Available for supervision
Media expert

Prof David Ascher is currently an NHMRC Investigator, immediate past Director of the Biotechnology Program, and Deputy Associate Dean (Research Partnerships) in the Faculty of Science at the University of Queensland. He is also Head of Computational Biology and Clinical Informatics at the Baker Institute.

David’s research focus is in modelling biological data to gain insight into fundamental biological processes. One of his primary research interests has been developing tools to unravel the link between genotype and phenotype, using computational and experimental approaches to understand the effects of mutations on protein structure and function. His group has developed a platform of over 40 widely used programs for assessing the molecular consequences of coding variants (>7 million hits/year).

Working with clinical collaborators in Australia, Brazil and UK, these methods have been translated into the clinic to guide the diagnosis, management and treatment of a number of hereditary diseases, rare cancers and drug resistant infections.

David has a B.Biotech from the University of Adelaide, majoring in Biochemistry, Biotechnology and Pharmacology and Toxicology; and a B.Sci(Hon) from the University of Queensland, majoring in Biochemistry, where he worked with Luke Guddat and Ron Duggleby on the structural and functional characterization of enzymes in the branched-chain amino acid biosynthetic pathway. David then went to St Vincent’s Institute of Medical Research to undertake a PhD at the University of Melbourne in Biochemistry. There he worked under the supervision of Michael Parker using computational, biochemical and structural tools to develop small molecules drugs to improve memory.

In 2013 David went to the University of Cambridge to work with Sir Tom Blundell on using fragment based drug development techniques to target protein-protein interactions; and subsequently on the structural characterisation of proteins involved in non-homologous DNA repair. He returned to Cambridge in 2014 to establish a research platform to characterise the molecular effects of mutations on protein structure and function- using this information to gain insight into the link between genetic changes and phenotypes. He was subsequently recruited as a lab head in the Department of Biochemistry and Molecular Biology at the University of Melbourne in 2016, before joining the Baker Institute in 2019 and the University of Queensland in 2021.

He is an Associate Editor of PBMB and Fronteirs in Bioinformatics, and holds honorary positions at Bio21 Institute, Cambridge University, FIOCRUZ, and the Tuscany University Network.

David Ascher
David Ascher

Dr Melinda Ashcroft

Research Fellow (Climate Change)
Greenslopes Clinical Unit
Faculty of Health, Medicine and Behavioural Sciences
Availability:
Available for supervision

Dr Melinda Ashcroft is a Research Fellow on Infectious Disease Epidemiology (Climate Change) in the Faculty of Medicine at The University of Queensland (UQ). Her current research focus is on Nontuberculous mycobacteria (NTM) and how NTM infections are associated with climate change and major weather events. Previously Melinda has worked at Monash University as a Research Fellow on the Sero-epidemiology of Klebsiella spp., at the University of Melbourne as a Postdoctoral Research Fellow on the Genomic Epidemiology of Neisseria gonorrhoeae and as a Research Associate at UQ on the genomics and epigenomics of extraintestinal pathogenic Escherichia coli. Melinda was awarded a Bachelor of Applied Science (Biotechnology/Biochemistry) in 2004 from Queensland University of Technology and a Master of Biotechnology in 2013 from UQ. She then switched fields to Microbial Genomics and was awarded a PhD from UQ in 2019 for her thesis: Evolution and function of mobile genetic elements and DNA methyltransferases in extraintestinal pathogenic Escherichia coli.

Melinda Ashcroft
Melinda Ashcroft

Associate Professor Scott Beatson

Affiliate of Australian Centre for Ecogenomics (ACE)
Australian Centre for Ecogenomics
Faculty of Science
Associate Professor
School of Chemistry and Molecular Biosciences
Faculty of Science
Availability:
Available for supervision

Scott Beatson is an Associate Professor and NHMRC Career Development Fellow at The University of Queensland (UQ). He specializes in bacterial pathogenomics: using whole-genome sequencing to investigate transmission, pathogenesis and antibiotic resistance in bacteria. Recent work from his group includes genomic analyses of pandrug resistant enterobacteriaceae and the multidrug resistant Escherichia coli ST131 pandemic clone. He was awarded a PhD from UQ for his work in bacterial pathogenesis in 2002 and developed his career in bacterial genomics in the United Kingdom with the support of fellowships from the Royal Commission for the Exhibition of 1851 (University of Oxford) and the UK Medical Research Council (University of Birmingham). Since returning to Australia he has held fellowships from both the NHMRC and ARC and has led a successful research group in the School of Chemistry and Molecular Biosciences at UQ since 2008. He is also a member of the Australian Infectious Diseases Research Centre and the Australian Centre for Ecogenomics. In 2016 he received the Frank Fenner Award from the Australian Society for Microbiology in recognition of his contribution to microbiology research in Australia.

Scott Beatson
Scott Beatson

Professor Mikael Boden

Professor
School of Chemistry and Molecular Biosciences
Faculty of Science
Availability:
Available for supervision
Media expert

Mikael Bodén has a PhD in Computer Science and statistical machine learning from the University of Exeter (UK) but has spent the last decade and a half in biological research environments, including the Institute for Molecular Bioscience/ARC Centre of Excellence in Bioinformatics and the School of Chemistry and Molecular Biosciences, where he is currently located. He is the director of UQ’s postgraduate program in bioinformatics. Mikael Bodén has supervised 7 postdocs from funding he received from both ARC and NHMRC; he has been the primary advisor for 11 PhD and 3 MPhil graduates; he is currently supervising another 6 PhD students in bioinformatics and computational biology. Mikael Bodén collaborates with researchers in neuroscience, developmental biology, protein engineering and bioeconomy to mention but a few, and contributes expertise in the processing, analysis and integration of biological data; this is exemplified by recent publications in Science, Nature Catalysis, Nature Communications, Cell Systems, Nucleic Acids Research and Bioinformatics.

Mikael Boden
Mikael Boden

Dr Sandra Brosda

Research Fellow
PA Southside Clinical Unit
Faculty of Health, Medicine and Behavioural Sciences
Availability:
Not available for supervision

Dr Sandra Brosda is a Research Fellow within the Surgical Oncology group led by Professor Andrew Barbour.

Dr Brosda was awarded a PhD in bioinformatics and cancer genetics from the University of Queensland in November 2020. Her research focused on biomarker discovery and intra-tumour heterogeneity and tumour evolution in oesophageal adenocarcinoma (OAC). In 2021, Dr Brosda was awarded a Cure Cancer Australia PdCCRS grant and an MSH project grant to further investigate tumour evolution to improve precision medicine in OAC.

She has been involved in research projects covering genetics, epigenetics, spatial transcriptomics, radiomics, ctDNA and quality of life assessments in the context of cancer. Overall, her research applies bioinformatics tools and approaches to cancer genomics to improve precision medicine and health outcomes for patients with melanoma, oesophago-gastric cancer and pancreatic cancer.

Sandra Brosda
Sandra Brosda

Associate Professor Cheong Xin Chan

Affiliate of Australian Centre for Ecogenomics (ACE)
Australian Centre for Ecogenomics
Faculty of Science
Affiliate of Centre for Marine Science
Centre for Marine Science
Faculty of Science
Associate Professor
School of Chemistry and Molecular Biosciences
Faculty of Science
Availability:
Available for supervision

Dr Chan has a PhD in Genomics and Computational Biology from UQ. He underwent postdoctoral training at Rutgers University (USA) in algal genomics and evolution. He returmed to UQ in late 2011 as one of the inaugural Great Barrier Reef Foundation Bioinformatics Fellows.

Dr Chan joined the School of Chemistry and Molecular Biosciences in 2020 as a group leader at the Australian Centre for Ecogenomics (ACE). His group uses advanced computational approaches to study genome evolution and develop scalable approaches for comparative genomics.

Cheong Xin Chan
Cheong Xin Chan

Associate Professor Seth Cheetham

Senior Principal Research Fellow
Australian Institute for Bioengineering and Nanotechnology
Availability:
Available for supervision
Media expert

A/Prof. Seth Cheetham is an ARC Discovery Early Career Award Fellow and Group Leader at the Australian Institute for Bioengineering and Nanotechnology. He is also the Deputy Director of the BASE facility, Australia's leading mRNA manufacturing hub. He completed his PhD at the University of Cambridge, supported by the Herchel Smith Research Studentship. Seth is a molecular biologist and geneticist with a focus on mRNA drugs, synthetic biology and epigenetics. He has authored 25 publications, in some of the most influential molecular biology journals including Science, Molecular Cell, Nature Reviews Genetics , Genome Biology and Nature Structural and Molecular Biology. His work has attracted > $15M including back-to-back NHMRC and ARC Fellowships. In 2021 Seth was awarded the Genetics Society of Australasia Alan Wilton ECR awarded for his research in the field of RNA and epigenetics.

Seth Cheetham
Seth Cheetham

Dr Dave Coman

ATH - Senior Lecturer
Children's Health Queensland Clinical Unit
Faculty of Health, Medicine and Behavioural Sciences
Availability:
Available for supervision

David is a Consultant Paediatrician, Metabolic Physician, Clinical Geneticist and clinician researcher. His area of expertise is the diagnosis and management of children with rare diseases. David is involved in multiple ongoing research projects aimed at novel disease discovery, improved diagnostic testing and treatments for children with inherited genetic disorders. He is director of a national clinic for Ataxia Telangiectasia brashat.org.au and has recently been awarded a $2.5 million NHMRC research grant for a phase 2/3 trial for treatment of this disorder.

Dave Coman
Dave Coman

Dr Lachlan De Hayr

Postdoctoral Research Fellow
School of Chemistry and Molecular Biosciences
Faculty of Science
Availability:
Available for supervision
Media expert

I am a molecular biologist and postdoctoral research fellow in Prof. Alexander Khromykh's laboratory. I specialise in non-coding RNA response to viral infections, virus genomics, RNA structure, and viral neuropathogenesis.

I began my journey with a Bachelor of Science in Molecular Biology, graduating in 2012. I then completed a master’s degree where I conducted research under Prof. Keith Chappell in viral protein structure (2015). I then pursued my PhD (2016-2020) at UQ's School of Biology under Prof. Sassan Asgari, where I studied the role of miRNAs in Aedes aegypti biology and viral infection as well as the use of small RNAs to induce gene expression in insects.

From 2020 to 2023 I worked as a postdoctoral researcher in Prof. Robert Harvey’s laboratory at the University of the Sunshine Coast. I conducted research into the genomics and molecular function of congenital neurodevelopmental disorders where our multi discipline team through the Centre for Research Excellence Neurocognitive Disorder identified and characterised new genes linked to developmental disorders.

Since 2023, I have been a postdoctoral researcher in Prof. Alexander Khromykh's RNA Virology lab. Here, I have contributed to work focusing on the role of flavivirus sfRNA in interferon signalling inhibition, as well as using single-cell sequencing and human brain organoids to study the pathogenesis of encephalitic flaviviruses. I have also been working on mosquito single-cell projects and insect-specific viruses for their role in preventing the transmission of pathogenic flaviviruses with Dr. Andrii Slonchak. In late 2024 as a Chief investigator, my team was awarded an NHMRC ideas grant for $1.4mil over four years to study a new class of small RNAs called tRNA-half, for their role in flavivirus infection and their potential use for therapeutics.

Lachlan De Hayr
Lachlan De Hayr

Professor Sandie Degnan

Affiliate of Centre for Marine Science
Centre for Marine Science
Faculty of Science
Professorial Research Fellow
School of the Environment
Faculty of Science
Availability:
Not available for supervision
Media expert

Evolutionary and ecological genomics of marine invertebrate animals.

My lab's research is driven by a fascination with genomes that carry within them endless, brilliant solutions forged by evolution over millions of years in response to a constantly changing ocean. We tap into this to learn how the genomes of coral reef invertebrates and their bacterial symbionts interact with each other, and with the environment, throughout their life cycle. We study these gene-environment interactions in evolutionary and ecological contexts, using genomic, molecular and cellular approaches combined with behavioural ecology in natural populations.

We work often with embryonic and larval life history stages of indirect developers, as these stages are crucial to the maintenance and evolution of marine populations. Our current focus is around larval settlement and metamorphosis in the holobiont of the coral reef demosponge Amphimedon queenslandica. In recent years, our work has extended to functional genomic approaches to identify noval ways to control the coral reef pest, the Crown-of-Thorns starfish.

When not immersed in the molecular or computer lab, we are lucky enough to be immersed in the ocean, often in beautiful places!

Sandie Degnan
Sandie Degnan

Associate Professor Paul Dennis

Affiliate of Centre for Marine Science
Centre for Marine Science
Faculty of Science
Affiliate Associate Professor of School of Agriculture and Food Sustainability
School of Agriculture and Food Sustainability
Faculty of Science
Associate Professor in Env Science
School of the Environment
Faculty of Science
Availability:
Available for supervision

Paul Dennis leads an exciting research group that applies cutting-edge technologies to understand the roles of microorganisms and their responses to environmental change.

He is also a passionate educator and public speaker who advocates for the importance of biological diversity and evidence-based environmental awareness. He has talked about his research on ABC Radio and a range of other media outlets.

His teaching covers aspects of ecology, microbiology, plant and soil science, and climatology. He considers these topics to be of fundamental importance for the development of more sustainable societies and takes pride in helping others to obtain the knowledge and skills they need to build a better future.

Paul's research has taken him to Antarctica, the Amazon Rainforest, high mountains and oceans. The approaches used in his lab draw on a wide range of expertise in molecular biology, ecology, statistics, computer science, advanced imaging and soil science. He applies these skills to a wide-range of topics and systems including plant-microbe interactions, Antarctic marine and terrestrial ecology, biogeography, pollution and human health.

Paul Dennis
Paul Dennis

Associate Professor Paul Ebert

Reader
School of Agriculture and Food Sustainability
Faculty of Science
Reader
School of the Environment
Faculty of Science
Availability:
Available for supervision
Media expert

Genetics of mental health (new research)

We are using the genetic model organism, C. elegans, do investigate the genetic basis of both normal and disordered behaviour. Our current interests are identifying the genes responsible for anxiety and depression as well as the genes for eating disoders and addiction. Using C. elegans as a model organism will also allow us to study gene function as it relates to behaviour.

Molecular mechanisms of phosphine resistance (other research)

Genetic mapping of oxidative stress resistance genes. The fumigant phosphine disrupts oxidative metabolism, resulting in the production of reactive oxygen intermediates. This causes the premature ageing and death of targeted pests. Insect pests of stored grain in Australia now exhibit resistance to phosphine at levels more than 200 times the normal lethal dose.

We have genetically mappedf and identified the genes responsible for phosphine resistance in tall major insect pests of stored grain. We are using a systems biology approach in the model organism C. elegans to understand the molecular basis of phosphine action. Our genetic studies have recently shown that resistance to phosphine is associated with an extension of lifespan

Paul Ebert
Paul Ebert

Dr Daniel Edge-Garza

Postdoctoral Research Fellow - Apple Genomics
Queensland Alliance for Agriculture and Food Innovation
Availability:
Available for supervision

Dr Daniel Edge-Garza is a horticulture and crop geneticist at the Queensland Alliance for Agriculture and Food Innovation at the University of Queensland, Australia. His research interests are to develop and translate tools using genome-wide DNA information for breeders and growers to make meaningful decisions. Daniel’s PhD awarded by the University of Queensland in 2024 focused on identifying global G x E patterns to assist with improved germplasm-environment matching for commercial deployment. Before joining QAAFI, he obtained his Bachelor's Degree in Biological Sciences in 2005 and Master's Degree in Biotechnology in 2009 both at California State University, Fresno. From 2008, he worked as a faculty associate in research for tree fruit breeding at Washington State University becoming recognized worldwide for his efforts to streamline the deployment of DNA tests for pome and stone fruit breeding programs. He has also collaborated with the Genome Database for Rosaceae since 2018 to curate genomics data and train breeders on how to upload and access their data on the Breeding Information Management System.

Daniel Edge-Garza
Daniel Edge-Garza

Dr Paul Evans

Affiliate of Australian Centre for Ecogenomics (ACE)
Australian Centre for Ecogenomics
Faculty of Science
ARC Future Fellow
School of Chemistry and Molecular Biosciences
Faculty of Science
Availability:
Not available for supervision
Paul Evans
Paul Evans

Dr Mehrnush Forutan

QAAFI Early Career, Research Fellow
Queensland Alliance for Agriculture and Food Innovation
Availability:
Available for supervision

Dr. Forutan is an internationally recognized Researcher. Her research area includes understanding the bovine genome and epigenome, discovering causative mutation underlying economic important traits such as fertility, understanding the way genes turn on and off, investigating different methodologies to improve the accuracy of genomic prediction, and optimizing methods for predicting genetic diversity and inbreeding. Her future research career vision is to make a significant contribution to creating new knowledge in the field of quantitative genetics that can help to improve efficiency and resilience in Livestock.

Mehrnush Forutan
Mehrnush Forutan

Dr Alesha Hatton

Postdoctoral Research Fellow
Institute for Molecular Bioscience
Availability:
Available for supervision

Alesha Hatton is a postdoctoral research fellow specializing in statistical genetics and genetic epidemiology at the Institute for Molecular Bioscience, University of Queensland. Currently, her research focuses on understanding the genetic and environmental aetiology underlying complex traits through use of Mendelian randomization and statistical genetics methodologies. Her PhD was in systems genomics, applying quantitative genetics methods to investigate the role of DNA methylation in complex trait variation. Alesha has a bachelor’s degree in medical mathematics from the University of Wollongong (2016) and previously was employed as a statistician at the South Australian health and Medical Research Institute.

Alesha Hatton
Alesha Hatton

Dr Valentin Hivert

Research Fellow
Institute for Molecular Bioscience
Availability:
Available for supervision

Valentin was awarded a PhD from the French National Institute of Higher Education in Agricultural Sciences and the University of Montpellier (France) in 2018. His thesis focused on methodological developments for genetic differentiation analysis in the Next Generation Sequencing era in a neutral and adaptive context. Since 2019, he works as a post-doctoral researcher at the University of Queensland in the Program in Complex Trait Genomics group under the supervision of Professor Peter Visscher. His current research focuses on studying the within and between-population genetic variation in human complex traits.

Valentin Hivert
Valentin Hivert

Dr Clara Jiang

Postdoctoral Research Fellow
Institute for Molecular Bioscience
Availability:
Available for supervision

Clara Jiang is a postdoctoral research fellow at the Institute for Molecular Bioscience, the University of Queensland. Clara’s research focuses on using genomic and transcriptomic analysis to investigate the genetic basis of cardiovascular and psychiatric disorders, with a particular focus on female health, as well as using statistical genomic approaches to explore possible opportunities for drug repurposing. Clara graduated from the University of Queensland with Bachelor of Advanced Science (First Class Honours) in 2017, and was awarded the University Medal. Clara was awarded her PhD at the University of Queensland in 2021, where she utilised bioinformatic approaches and molecular experiments to decipher the genetic aetiology of breast cancer, specifically the regulatory role of transposons or ‘jumping genes’ in modulating the transcriptional landscape in the cancer state. Clara is also a UQ Wellness ambassador and an advocate for promoting equity, diversity and inclusion in academia.

Clara Jiang
Clara Jiang

Dr David Kainer

Senior Research Fellow
School of Agriculture and Food Sustainability
Faculty of Science
Availability:
Available for supervision
Media expert

I am a computational biologist with a centre-wide research role in the ARC Centre of Excellence for Plant Success in Nature and Agriculture, based here at UQ. I spend my time researching new computational techniques for predicting complex quantitative traits by integrating multiple layers of 'omics data (amongst dozens of other things!).

Areas of interest:

  • Machine Learning, AI and high performance computing to learn and exploit functional connectivity in biological data
  • Gene Expressions networks
  • Multiplex networks, information propagation and perturbation
  • Genomic Prediction

My goal is to aid crop and forestry breeders in selecting parental lines more accurately, which gives us a pathway to improving certain plant species. I also spend time developing new data analysis techniques that are being applied to human disease and conditions such as Autism and substance addiction.

David completed his PhD at Australian National University in 2017, focusing on the genome-wide basis of foliar terpene variation in Eucalyptus. He then undertook a postdoc at Oak Ridge National Laboratory, a US Dept of Energy lab with a focus on big data. After a stint as a staff scientist at Oak Ridge, David arrived at the Centre of Excellence in 2023 in the role of a Senior Research Fellow.

David Kainer
David Kainer