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2021 Journal Article Evolution of tissue and developmental specificity of transcription start sites in Bos taurus indicusForutan, Mehrnush, Ross, Elizabeth, Chamberlain, Amanda J., Nguyen, Loan, Mason, Brett, Moore, Stephen, Garner, Josie B., Xiang, Ruidong and Hayes, Ben J. (2021). Evolution of tissue and developmental specificity of transcription start sites in Bos taurus indicus. Communications Biology, 4 (1) 829, 1-14. doi: 10.1038/s42003-021-02340-6 |
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2021 Journal Article Variants at the ASIP locus contribute to coat color darkening in Nellore cattleTrigo, Beatriz B., Utsunomiya, Adam T. H., Fortunato, Alvaro A. A. D., Milanesi, Marco, Torrecilha, Rafaela B. P., Lamb, Harrison, Nguyen, Loan, Ross, Elizabeth M., Hayes, Ben, Padula, Romulo C. M., Sussai, Thayla S., Zavarez, Ludmilla B., Cipriano, Rafael S., Caminhas, Maria M. T., Lopes, Flavia L., Pelle, Cassiano, Leeb, Tosso, Bannasch, Danika, Bickhart, Derek, Smith, Timothy P. L., Sonstegard, Tad S., Garcia, Jose F. and Utsunomiya, Yuri T. (2021). Variants at the ASIP locus contribute to coat color darkening in Nellore cattle. Genetics Selection Evolution, 53 (1) 40, 40. doi: 10.1186/s12711-021-00633-2 |
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2021 Journal Article Improved genomic prediction of clonal performance in sugarcane by exploiting non-additive genetic effectsYadav, Seema, Wei, Xianming, Joyce, Priya, Atkin, Felicity, Deomano, Emily, Sun, Yue, Nguyen, Loan T., Ross, Elizabeth M., Cavallaro, Tony, Aitken, Karen S., Hayes, Ben J. and Voss-Fels, Kai P. (2021). Improved genomic prediction of clonal performance in sugarcane by exploiting non-additive genetic effects. Theoretical and Applied Genetics, 134 (7), 2235-2252. doi: 10.1007/s00122-021-03822-1 |
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2021 Journal Article Accuracy of genomic prediction of complex traits in sugarcaneHayes, Ben J., Wei, Xianming, Joyce, Priya, Atkin, Felicity, Deomano, Emily, Yue, Jenny, Nguyen, Loan, Ross, Elizabeth M., Cavallaro, Tony, Aitken, Karen S. and Voss-Fels, Kai P. (2021). Accuracy of genomic prediction of complex traits in sugarcane. Theoretical and Applied Genetics, 134 (5), 1455-1462. doi: 10.1007/s00122-021-03782-6 |
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2020 Journal Article The future of livestock management: a review of real-time portable sequencing applied to livestockLamb, Harrison J., Hayes, Ben J., Nguyen, Loan T. and Ross, Elizabeth M. (2020). The future of livestock management: a review of real-time portable sequencing applied to livestock. Genes, 11 (12) 1478, 1-27. doi: 10.3390/genes11121478 |
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2020 Journal Article Genome-wide co-expression distributions as a metric to prioritize genes of functional importanceAlexandre, Pâmela A., Hudson, Nicholas J., Lehnert, Sigrid A., Fortes, Marina R. S., Naval-Sánchez, Marina, Nguyen, Loan T., Porto-Neto, Laercio R. and Reverter, Antonio (2020). Genome-wide co-expression distributions as a metric to prioritize genes of functional importance. Genes, 11 (10) 1231, 1231-13. doi: 10.3390/genes11101231 |
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2020 Journal Article X chromosome variants are associated with male fertility traits in two bovine populationsFortes, Marina R. S., Porto-Neto, Laercio R., Satake, Nana, Nguyen, Loan T., Freitas, Ana Claudia, Melo, Thaise P., Scalez, Daiane Cristina Becker, Hayes, Ben, Raidan, Fernanda S. S., Reverter, Antonio and Boe-Hansen, Gry B. (2020). X chromosome variants are associated with male fertility traits in two bovine populations. Genetics Selection Evolution, 52 (1) 46, 46. doi: 10.1186/s12711-020-00563-5 |
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2020 Journal Article Gene regulation could be attributed to TCF3 and other key transcription factors in the muscle of pubertal heifersLau, Li Yieng, Nguyen, Loan T., Reverter, Antonio, Moore, Stephen S., Lynn, Aaron, McBride‐Kelly, Liam, Phillips‐Rose, Louis, Plath, Mackenzie, Macfarlane, Rhys, Vasudivan, Vanisha, Morton, Lachlan, Ardley, Ryan, Ye, Yunan and Fortes, Marina R. S. (2020). Gene regulation could be attributed to TCF3 and other key transcription factors in the muscle of pubertal heifers. Veterinary Medicine and Science, 6 (4) vms3.278, 695-710. doi: 10.1002/vms3.278 |
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2020 Journal Article Characterization of the poll allele in Brahman cattle using long-read Oxford Nanopore sequencingLamb, Harrison J., Ross, Elizabeth M., Nguyen, Loan T., Lyons, Russell E., Moore, Stephen S. and Hayes, Ben J. (2020). Characterization of the poll allele in Brahman cattle using long-read Oxford Nanopore sequencing. Journal of Animal Science, 98 (5) skaa127, skaa127. doi: 10.1093/jas/skaa127 |
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2019 Journal Article Proteomics recapitulates ovarian proteins relevant to puberty and fertility in Brahman heifers (Bos indicus L.)Tahir, Muhammad S., Nguyen, Loan T., Schulz, Benjamin L., Boe-Hansen, Gry A., Thomas, Milton G., Moore, Stephen S., Lau, Li Yieng and Fortes, Marina R S (2019). Proteomics recapitulates ovarian proteins relevant to puberty and fertility in Brahman heifers (Bos indicus L.). Genes, 10 (11) 923, 923. doi: 10.3390/genes10110923 |
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2018 Journal Article Combining multi-OMICs information to identify key-regulator genes for pleiotropic effect on fertility and production traits in beef cattleFonseca, Pablo Augusto de Souza, Id-Lahoucine, Samir, Reverter, Antonio, Medrano, Juan F., Fortes, Marina S., Casellas, Joaquim, Miglior, Filippo, Brito, Luiz, Carvalho, Maria Raquel S., Schenkel, Flávio S., Nguyen, Loan T., Porto-Neto, Laercio R., Thomas, Milton G. and Cánovas, Angela (2018). Combining multi-OMICs information to identify key-regulator genes for pleiotropic effect on fertility and production traits in beef cattle. PLOS ONE, 13 (10) e0205295, e0205295. doi: 10.1371/journal.pone.0205295 |
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2018 Journal Article Pre- and post-puberty expression of genes and proteins in the uterus of Bos indicus heifers: the luteal phase effect post-pubertyFortes, M. R.S., Zacchi, L. F., Nguyen, L. T., Raidan, F., Weller, M. M.D.C.A., Choo, J. J.Y., Reverter, A., Rego, J. P.A., Boe-Hansen, G. B., Porto-Neto, L. R., Lehnert, S. A., Cánovas, A., Schulz, B. L., Islas-Trejo, A., Medrano, J. F., Thomas, M. G. and Moore, S. S. (2018). Pre- and post-puberty expression of genes and proteins in the uterus of Bos indicus heifers: the luteal phase effect post-puberty. Animal Genetics, 49 (6), 539-549. doi: 10.1111/age.12721 |
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2018 Journal Article Adipose tissue proteomic analyses to study puberty in Brahman heifersNguyen, L. T., Zacchi, L. F., Schulz, B. L., Moore, S. S. and Fortes, M. R. S. (2018). Adipose tissue proteomic analyses to study puberty in Brahman heifers. Journal of Animal Science, 96 (6), 2392-2398. doi: 10.1093/jas/sky128 |
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2018 Journal Article STAT6, PBX2, and PBRM1 emerge as predicted regulators of 452 differentially expressed genes associated with puberty in Brahman heifersNguyen, Loan T., Reverter, Antonio, Cánovas, Angela, Venus, Bronwyn, Anderson, Stephen T., Islas-Trejo, Alma, Dias, Marina M., Crawford, Natalie F., Lehnert, Sigrid A., Medrano, Juan F., Thomas, Milt G., Moore, Stephen S. and Fortes, Marina R.S. (2018). STAT6, PBX2, and PBRM1 emerge as predicted regulators of 452 differentially expressed genes associated with puberty in Brahman heifers. Frontiers in Genetics, 9 (MAR) 87, 1-13. doi: 10.3389/fgene.2018.00087 |
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2017 Journal Article SNP detection using RNA-sequences of candidate genes associated with puberty in cattleDias, M. M., Cánovas, A, Mantilla-Rojas, C, Riley, D. G., Luna-Nevarez, P, Coleman, S. J., Speidel, S. E., Enns, R. M., Islas-Trejo, A., Medrano, J. F., Moore, S. S., Fortes, M. R. S., Nguyen, L. T., Venus, B., Diaz, I. S. D. P., Souza, F. R. P., Fonseca, L. F. S., Baldi, F., Albuquerque, L. G., Thomas, M. G. and Oliveira, H. N. (2017). SNP detection using RNA-sequences of candidate genes associated with puberty in cattle. Genetics and Molecular Research, 16 (1) gmr16019522. doi: 10.4238/gmr16019522 |
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2017 Journal Article Global differential gene expression in the pituitary gland and the ovaries of pre- and postpubertal Brahman heifersNguyen, L. T., Reverter, A., Canovas, A., Venus, B., Islas-Trejo, A., Porto-Neto, L. R., Lehnert, S. A., Medrano, J. F., Moore, S. S. and Fortes, M. R. S. (2017). Global differential gene expression in the pituitary gland and the ovaries of pre- and postpubertal Brahman heifers. Journal of Animal Science, 95 (2), 599-615. doi: 10.2527/jas.2016.0921 |
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2016 Journal Article Transcriptome analyses identify five transcription factors differentially expressed in the hypothalamus of post-versus prepubertal Brahman heifersFortes, M. R. S., Nguyen, L. T., Weller, M. M. D. C. A., Canovas, A., Islas-Trejo, A., Porto-Neto, L. R., Reverter, A., Lehnert, S. A., Boe-Hansen, G. B., Thomas, M. G., Medrano, J. F. and Moore, S. S. (2016). Transcriptome analyses identify five transcription factors differentially expressed in the hypothalamus of post-versus prepubertal Brahman heifers. Journal of Animal Science, 94 (9), 3693-3702. doi: 10.2527/jas.2016-0471 |
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2016 Journal Article Polymorphisms and genes associated with puberty in heifersFortes, Marina R.S., Nguyen, Loan To, Porto Neto, Laercio R., Reverter, Antonio, Moore, Stephen S., Lehnert, Sigrid A. and Thomas, Milton G. (2016). Polymorphisms and genes associated with puberty in heifers. Theriogenology, 86 (1), 333-339. doi: 10.1016/j.theriogenology.2016.04.046 |
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2014 Journal Article Evidence for positive selection of taurine genes within a QTL region on chromosome X associated with testicular size in Australian Brahman cattleLyons, Russell E., Loan, Nguyen To, Dierens, Leanne, Fortes, Marina R. S., Kelly, Matthew, McWilliam, Sean S., Li, Yutao, Bunch, Rowan J., Harrison, Blair E., Barendse, William, Lehnert, Sigrid A. and Moore, Stephen S. (2014). Evidence for positive selection of taurine genes within a QTL region on chromosome X associated with testicular size in Australian Brahman cattle. BMC Genetics, 15 (1) 6, 6.1-6.10. doi: 10.1186/1471-2156-15-6 |
