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2024 Journal Article Autotrophic adaptive laboratory evolution of the acetogen Clostridium autoethanogenum delivers the gas-fermenting strain LAbrini with superior growth, products, and robustnessIngelman, Henri, Heffernan, James K., Harris, Audrey, Brown, Steven D., Shaikh, Kurshedaktar Majibullah, Saqib, Asfand Yar, Pinheiro, Marina J., de Lima, Lorena Azevedo, Rodriguez Martinez, Karen, Gonzalez-Garcia, Ricardo A., Hawkins, Grant, Daleiden, Jim, Tran, Loan, Zeleznik, Hunter, Jensen, Rasmus O., Reynoso, Vinicio, Schindel, Heidi, Jänes, Jürgen, Simpson, Séan D., Köpke, Michael, Marcellin, Esteban and Valgepea, Kaspar (2024). Autotrophic adaptive laboratory evolution of the acetogen Clostridium autoethanogenum delivers the gas-fermenting strain LAbrini with superior growth, products, and robustness. New Biotechnology, 83, 1-15. doi: 10.1016/j.nbt.2024.06.002 |
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2024 Journal Article Adaptive laboratory evolution of Clostridium autoethanogenum to metabolize CO2 and H2 enhances growth rates in chemostat and unravels proteome and metabolome alterationsHeffernan, James, Garcia Gonzalez, R. Axayactl, Mahamkali, Vishnu, McCubbin, Tim, Daygon, Dara, Liu, Lian, Palfreyman, Robin, Harris, Audrey, Koepke, Michael, Valgepea, Kaspar, Nielsen, Lars Keld and Marcellin, Esteban (2024). Adaptive laboratory evolution of Clostridium autoethanogenum to metabolize CO2 and H2 enhances growth rates in chemostat and unravels proteome and metabolome alterations. Microbial Biotechnology, 17 (4) e14452, e14452. doi: 10.1111/1751-7915.14452 |
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2024 Journal Article Design of a microbial photoheterotrophic consortia for biohydrogen production under nongrowing conditions: Insight into microbial associationsVelasco, A., Guerra-Blanco, P., Gonzalez, A., Salgado-Manjarrez, z e E., Aranda-Barradas, J. and Garcia-Pena, E. I. (2024). Design of a microbial photoheterotrophic consortia for biohydrogen production under nongrowing conditions: Insight into microbial associations. International Journal of Hydrogen Energy, 60, 1299-1308. doi: 10.1016/j.ijhydene.2024.02.177 |
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2023 Journal Article Characterisation of acetogen formatotrophic potential using Eubacterium limosumWood, Jamin C., Gonzalez-Garcia, R. Axayacatl, Daygon, Dara, Talbo, Gert, Plan, Manuel R., Marcellin, Esteban and Virdis, Bernardino (2023). Characterisation of acetogen formatotrophic potential using Eubacterium limosum. Applied Microbiology and Biotechnology, 107 (14), 4507-4518. doi: 10.1007/s00253-023-12600-6 |
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2023 Journal Article Molecular understanding of Eubacterium limosum chemostat methanol metabolismWood, Jamin C., Gonzalez-Garcia, R. Axayacatl, Daygon, Dara, Talbo, Gert, Plan, Manuel R., Marcellin, Esteban and Virdis, Bernardino (2023). Molecular understanding of Eubacterium limosum chemostat methanol metabolism. Sustainable Energy and Fuels, 7 (10), 2397-2412. doi: 10.1039/d2se01551j |
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2023 Journal Article Biogas upgrading using Clostridium autoethanogenum for value-added productsHeffernan, James K., Lai, Chun-Yu, Gonzalez-Garcia, R. Axayacatl, Nielsen, Lars Keld, Guo, Jianhua and Marcellin, Esteban (2023). Biogas upgrading using Clostridium autoethanogenum for value-added products. Chemical Engineering Journal, 452 (Part 1) 138950, 1-7. doi: 10.1016/j.cej.2022.138950 |
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2022 Journal Article Simultaneous production of biohydrogen (bioH2) and poly-hydroxy-alkanoates (PHAs) by a photoheterotrophic consortium bioaugmented with Syntrophomonas wolfeiGonzález, Axayacatl, Salgado, Edgar, Vanegas, Zaira, Niño-Navarro, Cristina, Cortés, Omar, Chairez, Isaac and García-Peña, Elvia I. (2022). Simultaneous production of biohydrogen (bioH2) and poly-hydroxy-alkanoates (PHAs) by a photoheterotrophic consortium bioaugmented with Syntrophomonas wolfei. Fermentation, 8 (11) 644, 1-17. doi: 10.3390/fermentation8110644 |
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2022 Journal Article Non-target impacts of pesticides on soil N transformations, abundances of nitrifying and denitrifying genes, and nitrous oxide emissionsDas, Shilpi, Wang, Weijin, Reeves, Steven, Dalal, Ram C., Dang, Yash P., Gonzalez, Axayacatl and Kopittke, Peter M. (2022). Non-target impacts of pesticides on soil N transformations, abundances of nitrifying and denitrifying genes, and nitrous oxide emissions. Science of the Total Environment, 844 157043, 1-13. doi: 10.1016/j.scitotenv.2022.157043 |
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2022 Journal Article Biofertilizers can enhance nitrogen use efficiency of sugarcaneQiu, Zhiguang, Paungfoo‐Lonhienne, Chanyarat, Ye, Jun, Gonzalez Garcia, Axa , Petersen, Ian, Di Bella, Lawrence, Hobbs, Richard, Ibanez, Minka, Heenan, Marijke, Wang, Weijin, Reeves, Steven and Schmidt, Susanne (2022). Biofertilizers can enhance nitrogen use efficiency of sugarcane. Environmental Microbiology, 24 (8), 3655-3671. doi: 10.1111/1462-2920.16027 |
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2021 Journal Article Towards sustainable bioinoculants: a fermentation strategy for high cell density cultivation of Paraburkholderia sp. SOS3, a plant growth-promoting bacterium isolated in Queensland, AustraliaPetersen, Ian, Paungfoo-Lonhienne, Chanyarat, Marcellin, Esteban, Nielsen, Lars Keld and Gonzalez, Axayacatl (2021). Towards sustainable bioinoculants: a fermentation strategy for high cell density cultivation of Paraburkholderia sp. SOS3, a plant growth-promoting bacterium isolated in Queensland, Australia. Fermentation, 7 (2) 58, 1-17. doi: 10.3390/fermentation7020058 |
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2021 Journal Article Transcriptional control of Clostridium autoethanogenum using CRISPRiFackler, Nick, Heffernan, James, Juminaga, Alex, Doser, Damien, Nagaraju, Shilpa, Gonzalez-Garcia, R. Axayacatl, Simpson, Séan D., Marcellin, Esteban and Köpke, Michael (2021). Transcriptional control of Clostridium autoethanogenum using CRISPRi. Synthetic Biology, 6 (1) ysab008, 1-8. doi: 10.1093/synbio/ysab008 |
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2021 Journal Article Nitrogen source influences the effect of plant growth-promoting rhizobacteria (Pgpr) on Macadamia integrifoliaGallart, Marta, Paungfoo-Lonhienne, Chanyarat, Gonzalez, Axayacatl and Trueman, Stephen J. (2021). Nitrogen source influences the effect of plant growth-promoting rhizobacteria (Pgpr) on Macadamia integrifolia. Agronomy, 11 (6) 1064, 1064. doi: 10.3390/agronomy11061064 |
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2020 Journal Article Adaptive laboratory evolution of native methanol assimilation in Saccharomyces cerevisiaeEspinosa, Monica I., Gonzalez-Garcia, Ricardo A., Valgepea, Kaspar, Plan, Manuel R., Scott, Colin, Pretorius, Isak S., Marcellin, Esteban, Paulsen, Ian T. and Williams, Thomas C. (2020). Adaptive laboratory evolution of native methanol assimilation in Saccharomyces cerevisiae. Nature Communications, 11 (1) 5564, 5564. doi: 10.1038/s41467-020-19390-9 |
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2020 Journal Article A pan-genome guided metabolic network reconstruction of five Propionibacterium species reveals extensive metabolic diversityMcCubbin, Tim, Gonzalez-Garcia, R. Axayacatl, Palfreyman, Robin W., Stowers, Chris, Nielsen, Lars K. and Marcellin, Esteban (2020). A pan-genome guided metabolic network reconstruction of five Propionibacterium species reveals extensive metabolic diversity. Genes, 11 (10) 1115, 1-26. doi: 10.3390/genes11101115 |
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2020 Journal Article Heterologous production of 6-deoxyerythronolide B in Escherichia coli through the wood werkman cycleGonzalez-Garcia, R. Axayacatl, Nielsen, Lars K. and Marcellin, Esteban (2020). Heterologous production of 6-deoxyerythronolide B in Escherichia coli through the wood werkman cycle. Metabolites, 10 (6) 228, 228. doi: 10.3390/metabo10060228 |
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2020 Journal Article Engineering Escherichia coli for propionic acid production through the Wood‐Werkman cycleGonzalez‐Garcia, R. A., McCubbin, T., Turner, M. S., Nielsen, L. K. and Marcellin, E. (2020). Engineering Escherichia coli for propionic acid production through the Wood‐Werkman cycle. Biotechnology and Bioengineering, 117 (1), 167-183. doi: 10.1002/bit.27182 |
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2019 Journal Article A TetR-family protein (CAETHG_0459) activates transcription from a new promoter motif associated with essential genes for autotrophic growth in acetogensLemgruber, Renato de Souza Pinto, Valgepea, Kaspar, Garcia, Ricardo Axayacatl Gonzalez, de Bakker, Christopher, Palfreyman, Robin William, Tappel, Ryan, Kopke, Michael, Simpson, Sean Dennis, Nielsen, Lars Keld and Marcellin, Esteban (2019). A TetR-family protein (CAETHG_0459) activates transcription from a new promoter motif associated with essential genes for autotrophic growth in acetogens. Frontiers in Microbiology, 10 2549, 2549. doi: 10.3389/fmicb.2019.02549 |
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2018 Journal Article Hydrogen production by a mixed photoheterotrophic culture: Correlation between gene expression analysis and physiological behaviorJurado-Marban, V. H., Tapia-Bustos, M. A., Gonzalez-Garcia, R. A., Salgado-Manjarrez, E. and García-Peña, E. I. (2018). Hydrogen production by a mixed photoheterotrophic culture: Correlation between gene expression analysis and physiological behavior. International Journal of Hydrogen Energy, 44 (2), 641-651. doi: 10.1016/j.ijhydene.2018.10.197 |
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2017 Journal Article Genome-scale model guided design of Propionibacterium for enhanced propionic acid productionNavone, Laura, McCubbin, Tim, Gonzalez-Garcia, Ricardo A., Nielsen, Lars K. and Marcellin, Esteban (2017). Genome-scale model guided design of Propionibacterium for enhanced propionic acid production. Metabolic Engineering Communications, 6, 1-12. doi: 10.1016/j.meteno.2017.11.001 |
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2017 Journal Article Awakening sleeping beauty: production of propionic acid in Escherichia coli through the sbm operon requires the activity of a methylmalonyl-CoA epimeraseGonzalez-Garcia, Ricardo Axayacatl, McCubbin, Tim, Wille, Annalena, Plan, Manuel, Nielsen, Lars Keld and Marcellin, Esteban (2017). Awakening sleeping beauty: production of propionic acid in Escherichia coli through the sbm operon requires the activity of a methylmalonyl-CoA epimerase. Microbial Cell Factories, 16 (1) 121, 121. doi: 10.1186/s12934-017-0735-4 |
