|
2013 Journal Article Re-annotation of the Saccharopolyspora erythraea genome using a systems biology approachMarcellin, Esteban, Licona-Cassani, Cuauhtemoc, Mercer, Tim R., Palfreyman, Robin W. and Nielsen, Lars K. (2013). Re-annotation of the Saccharopolyspora erythraea genome using a systems biology approach. BMC Genomics, 14: Provisional (699) 699, 1-18. doi: 10.1186/1471-2164-14-699 |
|
2013 Journal Article Enhanced gametocyte formation in erythrocyte progenitor cells: A site-specific adaptation by Plasmodium falciparumPeatey, Christopher L., Watson, Jolanta A., Trenholme, Katharine R., Brown, Christopher L., Nielson, Lars, Guenther, Marko, Timmins, Nicholas, Watson, Gregory S. and Gardiner, Donald L. (2013). Enhanced gametocyte formation in erythrocyte progenitor cells: A site-specific adaptation by Plasmodium falciparum. The Journal of Infectious Diseases, 208 (7), 1170-1174. doi: 10.1093/infdis/jit309 |
|
2013 Journal Article Genome scale analysis of differential mRNA expression of Helicoverpa zea insect cells infected with a H. armigera baculovirusNguyen, Quan, Chan, Leslie C. L., Nielsen, Lars K. and Reid, Steven (2013). Genome scale analysis of differential mRNA expression of Helicoverpa zea insect cells infected with a H. armigera baculovirus. Virology, 444 (1-2), 158-170. doi: 10.1016/j.virol.2013.06.004 |
|
2013 Journal Article 2,2-Diphenyl-1-picrylhydrazyl as a screening tool for recombinant monoterpene biosynthesisBehrendorff, James B. Y. H., Vickers, Claudia E., Chrysanthopoulos, Panagiotis and Nielsen, Lars K. (2013). 2,2-Diphenyl-1-picrylhydrazyl as a screening tool for recombinant monoterpene biosynthesis. Microbial Cell Factories, 12 (76) 76, 1-11. doi: 10.1186/1475-2859-12-76 |
|
2013 Journal Article Extracting reaction networks from databases-opening Pandora's boxFearnley, Liam, Davis, Melissa, Ragan, Mark A. and Nielsen, Lars K. (2013). Extracting reaction networks from databases-opening Pandora's box. Briefings in Bioinformatics, 15 (6), 973-983. doi: 10.1093/bib/bbt058 |
|
2013 Journal Article The role of hyaluronic acid precursor concentrations in molecular weight control in Streptococcus zooepidemicusChen, Wendy Yiting, Marcellin, Esteban, Steen, Jennifer A. and Nielsen, Lars Keld (2013). The role of hyaluronic acid precursor concentrations in molecular weight control in Streptococcus zooepidemicus. Molecular Biotechnology, 56 (2), 147-156. doi: 10.1007/s12033-013-9690-4 |
|
2013 Journal Article DNase I-hypersensitive exons colocalize with promoters and distal regulatory elementsMercer, Tim R., Edwards, Stacey L., Clark, Michael B., Neph, Shane J., Wang, Hao, Stergachis, Andrew B., John, Sam, Sandstrom, Richard, Li, Guoliang, Sandhu, Kuljeet S., Ruan, Yijun, Nielsen, Lars K., Mattick, John S. and Stamatoyannopoulos, John A. (2013). DNase I-hypersensitive exons colocalize with promoters and distal regulatory elements. Nature Genetics, 45 (8), 852-859. doi: 10.1038/ng.2677 |
|
2013 Journal Article Technoeconomic analysis of renewable aviation fuel from microalgae, Pongamia pinnata, and sugarcaneKlein-Marcuschamer, Daniel, Turner, Christopher, Allen, Mark, Gray, Peter, Dietzgen, Ralf G., Gresshoff, Peter M., Hankamer, Ben, Heimann, Kirsten, Scott, Paul T., Stephens, Evan, Speight, Robert and Nielsen, Lars K. (2013). Technoeconomic analysis of renewable aviation fuel from microalgae, Pongamia pinnata, and sugarcane. Biofuels, Bioproducts and Biorefining, 7 (4), 416-428. doi: 10.1002/bbb.1404 |
|
2013 Journal Article Physiological and transcriptional responses of saccharomyces cerevisiae to d-limonene show changes to the cell wall but not to the plasma membraneBrennan, Timothy C. R., Kroemer, Jens O. and Nielsen, Lars K. (2013). Physiological and transcriptional responses of saccharomyces cerevisiae to d-limonene show changes to the cell wall but not to the plasma membrane. Applied and Environmental Microbiology, 79 (12), 3590-3600. doi: 10.1128/AEM.00463-13 |
|
2013 Journal Article Knock-in/Knock-out (KIKO) vectors for rapid integration of large DNA sequences, including whole metabolic pathways, onto the Escherichia coli chromosome at well-characterised lociSabri, Suriana, Steen, Jennifer A., Bongers, Mareike, Nielsen, Lars K. and Vickers, Claudia E. (2013). Knock-in/Knock-out (KIKO) vectors for rapid integration of large DNA sequences, including whole metabolic pathways, onto the Escherichia coli chromosome at well-characterised loci. Microbial Cell Factories, 12 (1) 60, 60.1-60.14. doi: 10.1186/1475-2859-12-60 |
|
2013 Journal Article Decline in baculovirus-expressed recombinant protein production with increasing cell density is strongly correlated to impairment of virus replication and mRNA expressionHuynh, Hoai T., Tran, Trinh T. B., Chan, Leslie C. L., Nielsen, Lars K. and Reid, Steven (2013). Decline in baculovirus-expressed recombinant protein production with increasing cell density is strongly correlated to impairment of virus replication and mRNA expression. Applied Microbiology and Biotechnology, 97 (12), 5245-5257. doi: 10.1007/s00253-013-4835-8 |
|
2013 Journal Article Plant genome-scale metabolic reconstruction and modellingDal'Molin, Cristiana Gomes de Oliveria and Nielsen, Lars Keld (2013). Plant genome-scale metabolic reconstruction and modelling. Current Opinion in Biotechnology, 24 (2), 271-277. doi: 10.1016/j.copbio.2012.08.007 |
|
2013 Journal Article Engineered quorum-sensing using pheromone-mediated cell-to-cell communication in Saccharomyces cerevisiaeWilliams, Thomas C., Nielsen, Lars K. and Vickers, Claudia E. (2013). Engineered quorum-sensing using pheromone-mediated cell-to-cell communication in Saccharomyces cerevisiae. ACS Synthetic Biology, 2 (3), 136-149. doi: 10.1021/sb300110b |
|
2013 Journal Article Non-invasive monitoring of sucrose mobilization from culm storage parenchyma by magnetic resonance spectroscopyO'Neill, Brian P., Purnell, Matthew P., Kurniawan, Nyoman D., Cowin, Gary J., Galloway, Graham J., Nielsen, Lars K. and Brumbley, Stevens M. (2013). Non-invasive monitoring of sucrose mobilization from culm storage parenchyma by magnetic resonance spectroscopy. Bioscience, Biotechnology, and Biochemistry, 77 (3), 487-496. doi: 10.1271/bbb.120682 |
|
2013 Journal Article Flux balance analysis of CHO cells before and after a metabolic switch from lactate production to consumptionMartínez, Verónica S., Dietmair, Stefanie, Quek, Lake-Ee, Hodson, Mark P., Gray, Peter and Nielsen, Lars K. (2013). Flux balance analysis of CHO cells before and after a metabolic switch from lactate production to consumption. Biotechnology and Bioengineering, 110 (2), 660-666. doi: 10.1002/bit.24728 |
|
2013 Journal Article Saccharopolyspora erythraea's genome is organised in high-order transcriptional regions mediated by targeted degradation at the metabolic switchMarcellin, Esteban, Mercer, Tim R., Licona-Cassani, Cuauhtemoc, Palfreyman, Robin W., Dinger, Marcel E., Steen, Jennifer A., Mattick, John S. and Nielsen, Lars K. (2013). Saccharopolyspora erythraea's genome is organised in high-order transcriptional regions mediated by targeted degradation at the metabolic switch. BMC Genomics, 14 (1) 15, 15.1-15.9. doi: 10.1186/1471-2164-14-15 |
|
2013 Journal Article Molecular control of sucrose utilization in Escherichia coli W, an efficient sucrose-utilizing strainSabri, Suriana, Nielsen, Lars K. and Vickers, Claudia E. (2013). Molecular control of sucrose utilization in Escherichia coli W, an efficient sucrose-utilizing strain. Applied and Environmental Microbiology, 79 (2), 478-487. doi: 10.1128/AEM.02544-12 |
|
2012 Journal Article RNAi-mediated abrogation of trehalase expression does not affect trehalase activity in sugarcaneO'Neill, Brian P., Purnell, Matthew P., Nielsen, Lars K. and Brumbley, Stevens M. (2012). RNAi-mediated abrogation of trehalase expression does not affect trehalase activity in sugarcane. SpringerPlus, 1 (1) 74, 74:1-74:6. doi: 10.1186/2193-1801-1-74 |
|
2012 Journal Article Reconstruction of the Saccharopolyspora erythraea genome-scale model and its use for enhancing erythromycin productionLicona-Cassani, Cuauhtemoc, Marcellin, Esteban, Quek, Lake-Ee, Jacob, Shana and Nielsen, Lars K. (2012). Reconstruction of the Saccharopolyspora erythraea genome-scale model and its use for enhancing erythromycin production. Antonie van Leeuwenhoek International Journal of General and Molecular Microbiology, 102 (3), 493-502. doi: 10.1007/s10482-012-9783-2 |
|
2012 Journal Article Alleviating monoterpene toxicity using a two-phase extractive fermentation for the bioproduction of jet fuel mixtures in Saccharomyces cerevisiaeBrennan, Timothy C. R., Turner, Christopher D., Kroemer, Jens O. and Nielsen, Lars K. (2012). Alleviating monoterpene toxicity using a two-phase extractive fermentation for the bioproduction of jet fuel mixtures in Saccharomyces cerevisiae. Biotechnology and Bioengineering, 109 (10), 2513-2522. doi: 10.1002/bit.24536 |
