Overview
Background
Dr Sathish Periyasamy is a Research Fellow at a Queensland Brain Institute and Senior Scientist at Queensland Centre for Mental Health Research. He is currently building and focusing on Systems/Genomic Medicine and conducting research in the interface of systems genetics and psychiatry. He is involved in studying the mechanisms of (patho-)physiological processes in psychiatric disorders using a unique combination of educational experience coupled with over twenty-five years of computer programming and eleven years of computational biology experience in biomedicine. Over the past 20 years, his experience working in chemical, biological and medical domains has enabled him to focus on the interface of basic and clinical research and contribute to translational research. From 2011 to 2014, he was involved in cancer genetics research at King Abdullah International Medical Research Centre, KSA. As the bioinformatics lead, with interdisciplinary skills and expertise at the interface of computational intelligence, systems biology, and quantitative/psychiatric genetics, He has been contributing to psychiatric genetics research since 2014 in Professor Bryan Mowry’s lab.
His current research areas include:
- Bioinformatics, Systems Biology and Statistical Genetics - Developing and applying GWAS, post-GWAS bioinformatics, cross-population genetic association and systems genetics approaches.
- Psychiatric Genomics
- Common and rare variant association studies in schizophrenia using data generated from DNA microarray and whole-exome/whole-genome sequencing technologies.
- Post-GWAS bioinformatics approaches to characterise risk variants discovered in schizophrenia GWAS.
- Cross-population genetic association approaches in schizophrenia.
- Computational Intelligence – Developing conventional and visible deep learning models for biomedicine.
- Developing genetic resources for Indigenous Oceanic populations
Availability
- Dr Sathish Periyasamy is:
- Available for supervision
Fields of research
Qualifications
- Masters (Coursework) of Information Technology, Keele University
- Doctor of Philosophy of Bioinformatics (Advanced), Cardiff University
Research interests
-
Biological Complexity
Studying the emergent properties of biological systems.
Works
Search Professor Sathish Periyasamy’s works on UQ eSpace
Featured
2019
Journal Article
Genome-wide association studies in ancestrally diverse populations: opportunities, methods, pitfalls, and recommendations
Peterson, Roseann E., Kuchenbaecker, Karoline, Walters, Raymond K., Chen, Chia-Yen, Popejoy, Alice B., Periyasamy, Sathish, Lam, Max, Iyegbe, Conrad, Strawbridge, Rona J., Brick, Leslie, Carey, Caitlin E., Martin, Alicia R., Meyers, Jacquelyn L., Su, Jinni, Chen, Junfang, Edwards, Alexis C., Kalungi, Allan, Koen, Nastassja, Majara, Lerato, Schwarz, Emanuel, Smoller, Jordan W., Stahl, Eli A., Sullivan, Patrick F., Vassos, Evangelos, Mowry, Bryan, Prieto, Miguel L., Cuellar-Barboza, Alfredo, Bigdeli, Tim B., Edenberg, Howard J. ... Duncan, Laramie E. (2019). Genome-wide association studies in ancestrally diverse populations: opportunities, methods, pitfalls, and recommendations. Cell, 179 (3), 589-603. doi: 10.1016/j.cell.2019.08.051
Featured
2019
Journal Article
Association of schizophrenia risk with disordered niacin metabolism in an Indian genome-wide association study
Periyasamy, Sathish, John, Sujit, Padmavati, Raman, Rajendren, Preeti, Thirunavukkarasu, Priyadarshini, Gratten, Jacob, Vinkhuyzen, Anna, McRae, Allan, Holliday, Elizabeth G., Nyholt, Dale R., Nancarrow, Derek, Bakshi, Andrew, Hemani, Gibran, Nertney, Deborah, Smith, Heather, Filippich, Cheryl, Patel, Kalpana, Fowdar, Javed, McLean, Duncan, Tirupati, Srinivasan, Nagasundaram, Arunkumar, Gundugurti, Prasad Rao, Selvaraj, Krishnamurthy, Jegadeesan, Jayaprakash, Jorde, Lynn B., Wray, Naomi R., Brown, Matthew A., Suetani, Rachel, Giacomotto, Jean ... Mowry, Bryan J. (2019). Association of schizophrenia risk with disordered niacin metabolism in an Indian genome-wide association study. JAMA Psychiatry, 76 (10), 1026-1034. doi: 10.1001/jamapsychiatry.2019.1335
2024
Conference Publication
Investigation Of De Novo Mutations In Schizophrenia Affected Indian Families
Periyasamy, Sathish, Youssef, Pierre, Qiongyi, Zhao, John, Sujit, Smith, Heather, Gratten, Jacob, Thara, Rangaswamy and Mowry, Bryan (2024). Investigation Of De Novo Mutations In Schizophrenia Affected Indian Families. World Congress of Psychiatric Genetics WCPG 2024, Singapore, 15-19 October 2024. Amsterdam, Netherlands: Elsevier. doi: 10.1016/j.euroneuro.2024.08.285
2024
Journal Article
Genetic interactions of schizophrenia using gene-based statistical epistasis exclusively identify nervous system-related pathways and key hub genes
Periyasamy, Sathish, Youssef, Pierre, John, Sujit, Thara, Rangaswamy and Mowry, Bryan J. (2024). Genetic interactions of schizophrenia using gene-based statistical epistasis exclusively identify nervous system-related pathways and key hub genes. Frontiers in Genetics, 14 1301150. doi: 10.3389/fgene.2023.1301150
2023
Other Outputs
Schizophrenia genetic interaction
Periyasamy, Sathish, Youssef, Pierre, John, Sujit, Thara, Rangaswamy and Mowry, Bryan (2023). Schizophrenia genetic interaction. The University of Queensland. (Dataset) doi: 10.48610/24c3e5e
2023
Conference Publication
Investigating The Genetic Interactions Of Schizophrenia Using Gene-based Statistical Epistasis
Periyasamy, Sathish, Youssef, Pierre, John, Sujit, Thara, Rangaswamy and Mowry, Bryan (2023). Investigating The Genetic Interactions Of Schizophrenia Using Gene-based Statistical Epistasis. World Congress of Psychiatric Genetics WCPG 2023, Montreal, QC Canada, 10-14 October 2023. Amsterdam, Netherlands: Elsevier. doi: 10.1016/j.euroneuro.2023.08.280
2023
Journal Article
Schizophrenia risk conferred by rare protein-truncating variants is conserved across diverse human populations
Liu, Dongjing, Meyer, Dara, Fennessy, Brian, Feng, Claudia, Cheng, Esther, Johnson, Jessica S., Park, You Jeong, Rieder, Marysia-Kolbe, Ascolillo, Steven, de Pins, Agathe, Dobbyn, Amanda, Lebovitch, Dannielle, Moya, Emily, Nguyen, Tan-Hoang, Wilkins, Lillian, Hassan, Arsalan, Burdick, Katherine E., Buxbaum, Joseph D., Domenici, Enrico, Frangou, Sophia, Hartmann, Annette M., Laurent-Levinson, Claudine, Malhotra, Dheeraj, Pato, Carlos N., Pato, Michele T., Ressler, Kerry, Roussos, Panos, Rujescu, Dan, Arango, Celso ... Catts, Stan (2023). Schizophrenia risk conferred by rare protein-truncating variants is conserved across diverse human populations. Nature Genetics, 55 (3), 369-376. doi: 10.1038/s41588-023-01305-1
2022
Conference Publication
Investigating brain development using tissue and single-cell gene expression data
Periyasamy, Sathish , Youssef, Pierre and Mowry, Bryan (2022). Investigating brain development using tissue and single-cell gene expression data. The 21st International Conference on Systems Biology, Berlin, Germany, 8-12 October 2022.
2022
Book Chapter
Genome-wide association studies in schizophrenia
Mowry, Bryan J. and Periyasamy, Sathish (2022). Genome-wide association studies in schizophrenia. eLS. (pp. 1-14) Hoboken, NJ USA: John Wiley & Sons. doi: 10.1002/9780470015902.a0025337
2022
Journal Article
Mapping genomic loci implicates genes and synaptic biology in schizophrenia
Trubetskoy, Vassily, Pardiñas, Antonio F, Qi, Ting, Panagiotaropoulou, Georgia, Awasthi, Swapnil, Bigdeli, Tim B, Bryois, Julien, Chen, Chia-Yen, Dennison, Charlotte A, Hall, Lynsey S, Lam, Max, Watanabe, Kyoko, Frei, Oleksandr, Ge, Tian, Harwood, Janet C, Koopmans, Frank, Magnusson, Sigurdur, Richards, Alexander L, Sidorenko, Julia, Wu, Yang, Zeng, Jian, Grove, Jakob, Kim, Minsoo, Li, Zhiqiang, Voloudakis, Georgios, Zhang, Wen, Adams, Mark, Agartz, Ingrid, Atkinson, Elizabeth G ... Schizophrenia Working Group of the Psychiatric Genomics Consortium (2022). Mapping genomic loci implicates genes and synaptic biology in schizophrenia. Nature, 604 (7906), 502-508. doi: 10.1038/s41586-022-04434-5
2022
Journal Article
BrainDevo: spatio-temporal gene regulation repository of brain development
Periyasamy, Sathish and Mowry, Bryan (2022). BrainDevo: spatio-temporal gene regulation repository of brain development. Frontiers in Molecular Neuroscience, 15 799801, 799801. doi: 10.3389/fnmol.2022.799801
2022
Journal Article
Interaction testing and polygenic risk scoring to estimate the association of common genetic variants with treatment resistance in schizophrenia
Pardiñas, Antonio F., Smart, Sophie E., Willcocks, Isabella R., Holmans, Peter A., Dennison, Charlotte A., Lynham, Amy J., Legge, Sophie E., Baune, Bernhard T., Bigdeli, Tim B., Cairns, Murray J., Corvin, Aiden, Fanous, Ayman H., Frank, Josef, Kelly, Brian, McQuillin, Andrew, Melle, Ingrid, Mortensen, Preben B., Mowry, Bryan J., Pato, Carlos N., Periyasamy, Sathish, Rietschel, Marcella, Rujescu, Dan, Simonsen, Carmen, St Clair, David, Tooney, Paul, Wu, Jing Qin, Andreassen, Ole A., Kowalec, Kaarina, Sullivan, Patrick F. ... Vázquez-Bourgon, Javier (2022). Interaction testing and polygenic risk scoring to estimate the association of common genetic variants with treatment resistance in schizophrenia. JAMA Psychiatry, 79 (3) 20213799, 260-269. doi: 10.1001/jamapsychiatry.2021.3799
2021
Journal Article
Genetic architecture of schizophrenia: a review of major advancements
Legge, Sophie E., Santoro, Marcos L., Periyasamy, Sathish, Okewole, Adeniran, Arsalan, Arsalan and Kowalec, Kaarina (2021). Genetic architecture of schizophrenia: a review of major advancements. Psychological Medicine, 51 (13) PII S0033291720005334, 1-10. doi: 10.1017/s0033291720005334
2021
Journal Article
Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders
Blokland, Gabriëlla A.M., Grove, Jakob, Chen, Chia-Yen, Cotsapas, Chris, Tobet, Stuart, Handa, Robert, Ripke, Stephan, Neale, Benjamin M., Corvin, Aiden, Walters, James T.R., Farh, Kai-How, Holmans, Peter A., Lee, Phil, Bulik-Sullivan, Brendan, Collier, David A., Huang, Hailiang, Pers, Tune H., Agartz, Ingrid, Agerbo, Esben, Albus, Margot, Alexander, Madeline, Amin, Farooq, Bacanu, Silviu A., Begemann, Martin, Belliveau, Richard A., Bene, Judit, Bergen, Sarah E., Bevilacqua, Elizabeth, Bigdeli, Tim B. ... iPSYCH (2021). Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders. Biological Psychiatry, 91 (1), 102-117. doi: 10.1016/j.biopsych.2021.02.972
2021
Other Outputs
BrainDevo
Periyasamy, Sathish (2021). BrainDevo. The University of Queensland. (Dataset) doi: 10.48610/5f24ed4
2019
Journal Article
Comparative genetic architectures of schizophrenia in East Asian and European populations
Lam, Max, Chen, Chia-Yen, Li, Zhiqiang, Martin, Alicia R., Bryois, Julien, Ma, Xixian, Gaspar, Helena, Ikeda, Masashi, Benyamin, Beben, Brown, Brielin C., Liu, Ruize, Zhou, Wei, Guan, Lili, Kamatani, Yoichiro, Kim, Sung-Wan, Kubo, Michiaki, Kusumawardhani, Agung A. A. A., Liu, Chih-Min, Ma, Hong, Periyasamy, Sathish, Takahashi, Atsushi, Xu, Zhida, Yu, Hao, Zhu, Feng, Chen, Wei J., Faraone, Stephen, Glatt, Stephen J., He, Lin, Hyman, Steven E. ... Huang, Hailiang (2019). Comparative genetic architectures of schizophrenia in East Asian and European populations. Nature Genetics, 51 (12), 1670-1678. doi: 10.1038/s41588-019-0512-x
2019
Conference Publication
A novel approach for the generation of disease-specific genetic interaction data using gene-based statistical epistasis
Periyasamy, Sathish and Mowry, Bryan (2019). A novel approach for the generation of disease-specific genetic interaction data using gene-based statistical epistasis. International Conference on Systems Biology, Okinawa, Japan, 1-5 November 2019. Okinawa:
2019
Conference Publication
Prioritising causal variants in schizophrenia GWAS by investigating the regulatory impact of non-coding variants using differential binding and brain EQTL data
Mowry, Bryan and Periyasamy, Sathish (2019). Prioritising causal variants in schizophrenia GWAS by investigating the regulatory impact of non-coding variants using differential binding and brain EQTL data. 27th World Congress of Psychiatric Genetics (WCPG), Los Angeles, CA USA, 26-31 October 2019. Amsterdam, Netherlands: Elsevier. doi: 10.1016/j.euroneuro.2019.08.288
2019
Conference Publication
Modelling the impact of schizophrenia gwas loci during human brain development using spatio-temporal gene expression data
Periyasamy, Sathish and Mowry, Bryan (2019). Modelling the impact of schizophrenia gwas loci during human brain development using spatio-temporal gene expression data. 26th World Congress of Psychiatric Genetics (WCPG), Glasgow, Scotland, 11-15 October 2018. Amsterdam, Netherlands: Elsevier. doi: 10.1016/j.euroneuro.2018.08.489
2019
Conference Publication
First genome-wide association study of schizophrenia in an Indian population reveals a novel susceptibility locus
Periyasamy, Sathish, John, Sujit, Padmavati, Raman, Rajendren, Preeti, Thirunavukkarasu, Priyadarshini, Gratten, Jacob, Holliday, Elizabeth, Bakshi, Andrew, Jorde, Lynn, Brown, Matthew, Wray, Naomi, Suetani, Rachel, Giacomotto, Jean, Thara, Rangaswamy and Mowry, Bryan (2019). First genome-wide association study of schizophrenia in an Indian population reveals a novel susceptibility locus. 26th World Congress of Psychiatric Genetics (WCPG), Glasgow, Scotland, 11-15 October 2018. Amsterdam, The Netherlands: Elsevier . doi: 10.1016/j.euroneuro.2018.08.017
Funding
Past funding
Supervision
Availability
- Dr Sathish Periyasamy is:
- Available for supervision
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