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Dr Cassandra Pattinson

Senior Research Fellow
Child Health Research Centre
Faculty of Health, Medicine and Behavioural Sciences
Affiliate of ARC COE for the Digital Child (UQ Node)
ARC COE for the Digital Child
Faculty of Humanities, Arts and Social Sciences
Affiliate of ARC COE for Children and Families Over the Lifecourse
ARC COE for Children and Families Over the Lifecourse
Faculty of Humanities, Arts and Social Sciences
Availability:
Available for supervision
Media expert

Dr Cassandra Pattinson research centres around exploring the effects of sleep and circadian rhythms on health, wellbeing, and recovery across the lifespan. Dr Pattinson is a Senior Research Fellow at the Child Health Research Centre (CHRC) and the ARC centre of Excellence for the Digital Child. The Digital Child aims to support children growing up in the rapidly changing digital world, and provide strong evidence and guidance for children, families, educators, government and other concerned with children’s wellbeing. Her work has been supported by the ARC (including recently awarded an ARC Discovery Early Career Award, 2025), NHMRC, NIH and the DSTG, as well as the Australian Federal Government and Queensland Government.

Her research has involved a range of populations from children and adolescents, through to military personnel and athletes. Dr Pattinson's research spans a range of study designs and methodologies, including longitudinal studies tracking large child cohorts (>2000 children), standard observation techniques, survey and individualised standard child assessment, as well as studies employing physiological (actigraphy, spectrometry) and biological (hormones, proteomic, genomic) designs. Dr Pattinson also has a strong track record in research translation, these have included manuscripts in top scientific journals, reports for government and non-government organisations, development of professional development programs, as well as designing and presenting vodcasts and resources (e.g. fact sheets, workshops) to parent groups, young adults, government departments and the early childhood sector.

At CHRC Dr Pattinson is a part of the Community Sleep Health Group. This group collaborates with many other groups around broader issues of sleep and technology, sleep and the environment (including disasters), mental health and wellbeing, pain, disability, and new technologies and approaches.

Cassandra Pattinson
Cassandra Pattinson

Emeritus Professor John Pemberton

Emeritus Professor
School of Chemistry and Molecular Biosciences
Faculty of Science
Availability:
Available for supervision

My research interests have concentrated on the molecular genetic analysis of multigene phenotypes of bacteria encompassing pathogenicity, bacterial degradation of synthetic environmental pollutants, photosynthesis and the synthesis of antitumour antibiotics. My PhD research focussed on plasmids and mapping of the genome of the human pathogen P. aeruginosa (Pemberton,and Holloway, 1972a; Pemberton,and Holloway,1972b;Pemberton and Holloway,1973). I continued this research as a postdoc at UC Berkeley with John Clark in the Department of Molecular Biology in the Wendell Stanley Virus laboratory. I am grateful to Mark Guyer who taught me how to isolate large plasmid DNAs. In Robley Williams lab I learnt how to use the Kleinschmidt and Zahn technique for spreading the plasmid DNA on an electronmicroscope grid and metal shadow the sample to visualise it under an electron microscope; I am grateful to Robley Williams for showing me how to metal shadow my samples (Pemberton,1973; Pemberton and AJ Clark,1973; Miller, Pemberton and Richards,1974;Pemberton,1974;Miller,Pemberton and Clark,1977). After advice from John Clark and when I returned to Australia and took up an appointment with UQ I decided to diversify my research. During my postdoc I worked alongside Anne Emerick who was working with the CAM (camphor degradation) plasmid. John Clark put me on her advisory panel (alongside Mike Doudoroff and Norberto Palleroni) making her my first PhD student. The bacterial degradation of such complex naturally occurring molecules such as camphor required a large number of steps requiring a large number of genes hence a large plasmid. I decided to determine if soil bacteria had evolved plasmids which encoded the degradation of man-made molecules. I chose the synthetic herbicide 2,4-D. My research was the first to identify, isolate and clone genes responsible for the degradation of a man-made molecule –moreover the 2,4-D degradation was encoded by a broad host range plasmid, providing an explanation of how microorganisms rapidly evolve the ability to degrade and recycle a vast array of worldwide synthetic environmental pollutants which cause a range of diseases from cancer to birth defects (Pemberton & Fisher, Nature, 1977). One of the most widely studied microorganisms is the bacterium Ralstonia eutropha JMP134 pJP4 (Hgr) which has an extraordinary ability to degrade and recycle the most complex and most toxic synthetic molecules (Don and Pemberton, J.Bacteriol, 1981;Schmidt et.al.,2011. Catabolic Plasmids.Encyclopedia of Life Sciences). Famously more recent studies have shown that there are genes and gene clusters encoding the degradation of plastics, explosives and chemical weapons of war . Detailed studies of bacterial genes involved in the environmental degradation and recycling of a wide range naturally occurring and synthetic molecules show that degradation genes and degradation gene clusters play a major role in the worldwide carbon cycle.

Photosynthesis is considered the most important biological process on earth. And one of the most intensively studied photosynthetic organisms is the bacterium Rhodobacter sphaeroides. To start the research a local strain of R.sphaeroides, designated RS601, was isolated by Bill Tucker (my first australian PhD student) from a water sample obtained from a roadside ditch in Brisbane (Pemberton and Tucker,1977;Tucker and Pemberton,1978;1979;1980). One of the first discoveries made with this strain was lysogenic conversion to antibiotic resistance by a naturally occurring virus .(JM Pemberton, WT Tucker - Nature, 1977).

Subsequently when this strain was infected withe the broad host plasmid RP1 carrying the mecuric ion transposon Tn501 chromosome transfer occurred. This allowed the construction of the first genetic map of a photosynthetic bacterium(Pemberton and Bowen, J.Bacteriol, 1981). Mapping revealed that the photosynthesis gene cluster was on the main chromosome. Remarkably chromosome transfer occurred from a site right next to the photosynthesis gene cluster with early transfer of the entire cluster into the recipent cell. This provides a potential mechanism for the evolution and spread of photosynthesis genes. A clone bank of RS601 was constructed using pHC79:: Tn5deltaBamH1. This vector allowed cosmid cloning into the BamH1 site of Tn5. These Tn5 cosmid clones were transposed onto the broad host range plasmid pR751. The ability to transfer the entire cosmid clone bank to a wide range of bacteria led to the first cloning and heterologous expression of a carotenoid gene cluster (Pemberton&Harding,Current Microbiology,1986 & 1987).This indicated that genes involved in photosynthesis could be transferred to and expressed in a range of unrelated non-photosynthetic bacteria. Subsequent heterologous expression of carotenoid genes in an increasing variety of plants led to the production of foods enriched in the precursors of vitamin A e.g. Golden Rice (Erik Stokstad, Science Nov 20, 2019) . Vitamin A deficiency is the major preventable cause of blindness in children under 5 years of age; it affects up to 500,000 children each year. Using the same clone bank in mapping experiments in Rhodobacter sphaeroides I observed a few pale colonies in which carotenoid biosynthesis was suppressed. Subsequent detailed analysis of one of these cosmids led to the discovery of the long sought master regulator (PpsR) of bacterial photosynthesis and provided the first detailed insight into the mechanism by which bacterial photosynthesis is regulated at the molecular level (A Gene from the Photosynthetic Gene Cluster of Rhodobacter sphaeroides Induces trans Suppression of Bacteriochlorophyll and Carotenoid Levels in R.sphaeroides and R.capsulatus (R.J.Penfold and JM Pemberton, Current Microbiology, 1991; Sequencing, Chromosomal Inactivation and Functional Expression in E.coli of ppsR a Gene which represses carotenoid and bacteriochlorophyll synthesis in Rhodobacter sphaeroides. RJ Penfold and JM Pemberton. J.Bacteriol May 1994).Early studies by Cohen-Bazire, Sistrom and Stanier (1957) revealed that oxygen and blue light had varying effects on photosynthesis in Rhodobacter. The effect of oxygen was profound. The effect of blue light was more muted. The initial sequencing of ppsR (Penfold and Pemberton, 1994) revealed the presence of only two cys residues suggesting a possible mechanism for the profound effect of oxygen on PpsR repressor activity. Studies of conformational changes/repressor activity of PpsR in the presence and absence of oxygen have produced mixed results(Gomelsky et al.,2000;Masuda and Bauer.,2002). In contrast the muted effect of blue light on photosynthesis appears to be due to the blue light sensitive, anti-repressor AppA. (Gomelsky and Kaplan,1995). It is not known if any other environmental signals modulate PpsR activity.The rhodobacter research led to the construction of pJP5603 which allowed the precise insertion of a defined segment of DNA into a bacterial genome (Penfold and Pemberton,1992 ; Zordan,Beliveau,Trow,Craig and Cormack, 2015). The technique was used to either add functional genes or groups of genes to a precise location in the genome or to precisely target and inactivate individual genes. The site of insertion/mutagenesis is tagged with an antibiotic resistance gene. This process is known as “recombineering” ( Zhang et al., 1988). As with all forms of mutagenesis there are “off target” mutations. The consequences of such ”off target” mutations can range from minimal to extensive.

In a study of a range of genes encoding secreted enzymes involved in the degradation of naturally-occurring biological polymers e.g xylanases, cellulases,amylases, chitinases etc I attempted to obtain secretion genes from Chromobacterium violaceum. Again using the pHC79:: Tn5deltaBamH1 vector used in the study of the photosynthesis genes (Pemberton&Harding,Current Microbiology,1986 & 1987) I constructed a cosmid clone bank of C.violaceum. The clone bank I constructed did not produce secretion genes but instead 2-3 of the clones expressed the intense purple pigmented violacein in E.coli(Pemberton,1986). Subsequent subcloning revealed the gene cluster occupied 8kb and transposon mutagenesis revealed intense blue and intense green intermediates. (Pemberton et.al.,Current Microbiology,1991). I am grateful to Trudy Grossman for the detailed study of this cluster which included sequence analysis and functional characterisation of the violacein biosynthetic pathway (August et al., 2000). The functional analysis of the violacein gene cluster revealed that VioA VioC and VioD belong to the PheA(phenol) /TfdB (2,4-D) group of FAD dependant mono-oxygenases. TfdB is encoded by the 2,4-D degradation gene cluster of the broad host range IncP plasmid pJP4 carried by Ralstonia eutropha JMP134. This provides a link between the degradation of a man-made molecule-2,4-D and the synthesis of an anti-tumour antibiotic-violacein. Remarkably, under certain circumstances this 2,4-D degradation pathway can convert 2,4-D into the well known plant antibiotic-protoanemonin (Blasco,R et al., 1995).In 1983 Burt Ensley , Barry Ratzkin and co-workers (Ensley et al.,Science,1983) discovered that the naphthalene dioxygenase gene from Pseudomonas putida enabled E.coli K12 to synthesise the famous blue dye indigo from tryptophan; a second gene, VioD, from the violacein gene cluster also enabled E.coli K12 to produce indigo (Cheah et al.,Acta Crystallographica,1998). Further studies using the violacein gene cluster led to the development of techniques and vectors that should allow cloning and stable, high level expression of more antibiotic biosynthesis pathways in E.coli K12, particularly pathways from the prolific antibiotic producers the Streptomycetes providing novel antibiotics in the fight against antibiotic resistant pathogens (Sarovich and Pemberton,2007; Philip,Sarovich and Pemberton,2008 & 2009;Ahmetagic & Pemberton, 2010 & 2011;Ahmetagic, Philip ,Sarovich,Kluver and Pemberton,2011).An article published in June 2013 by Stevens and co-workers PLoS ONE 8(5) showed that a native gene cluster from Streptomyces rimosus encoding tetracycline can be directly expressed in E.coli K12.

For the first time researchers have showed the expression of the violacein gene cluster in a eukaryote-the yeast Saccharomyces cerevisiae (Lee et al., 2013). Such a discovery may indicate that the violacein gene cluster can be expressed in organisms which range from microbes to man. It may also indicate that major pathways from microorganisms can be engineered and expressed in a range of eukaryotes. Since violacein is a potent anticancer agent it is of interest to determine if the violacein cluster engineered into bacteria of the microbiome of an animal reduces cancer rates. Alternatively it may be possible to engineer the violacein pathway directly into an animal and observe if cancer rates are reduced. In view of the purported prokaryotic ancestry of eukaryoyic organelles such as mitochondria and chloroplasts ,one possible way of boosting violacein synthesis in eukaryotic cells could be to integrate the violacein gene cluster into organelle DNA.

Finally, violacein is chemically related to the well known anti-cancer drug staurosporine and possesses anticancer, antifungal, anti-parasite, antibacterial and antiviral activities;it might be possible to synthesise structural variants of violacein with more potent activity against various cancers and drug/antibiotic resistant pathogens. Interestingly is now known that violacein producing bacteria associated with the skin microbiome of certain frogs provides some protection against extinction by the worldwide spread of ‘chytrid’ fungus(Harris et.al., 2009). In addition, frogs have been used in cancer studies and may provide a simple model to test the anticancer properties of violacein. Since the violacein gene cluster is expressed in a wide range of bacteria ( Dr D S Philip, personal communication;D.S/Philip.PhD Thesis 2010) and has potent activity against the malarial parasite Plasmodium falciparum and other mosquito borne parasites, there is the possibility that mosquitoes engineered to carry the violacein gene cluster might be resistant to parasite infection. The cluster could be stably incorporated in the genomes of bacteria normally inhabiting the surface or the gut of the mosquito.A recent patent application (United States Patent Application 20170280730) indicates that Chromobacterium introduced into the microbiome of mosquitoes is useful for the prevention of transmission of malaria and dengue virus.In addition, chemical modification of violacein may produce drugs with even higher levels of activity against parasites including the malarial parasite ( Wilkinson et al., 2020). Violacein has activity against the pandemic virus Covid19 and there is some knowledge of its mode of action (Duran et al., 2021). Testing may reveal if it has activity against both Kappa and Delta Covid19 variants.Violacein can inhibit infection by HIV and COVID (Doganci et al., 2022)

  • Fellow, American Society for Microbiology
  • Fellow, Australian Society for Microbiology

Selected Publications:

  • Ahmetagic, Adnan, Philip, Daniel S., Sarovich, Derek S., Kluver, Daniel W. and Pemberton, John M. (2011) Plasmid encoded antibiotics inhibit protozoan predation of Escherichia coli K12. Plasmid, 66 3: 152-158. doi:10.1016/j.plasmid.2011.07.006
  • Ahmetagic, Adnan and Pemberton, John M. (2011) Antibiotic resistant mutants of Escherichia coli K12 show increases in heterologous gene expression. Plasmid, 65 1: 51-57. doi:10.1016/j.plasmid.2010.11.004
  • Ahmetagic, Adnan and Pemberton, John M. (2010) Stable high level expression of the violacein indolocarbazole anti-tumour gene cluster and the Streptomyces lividans amyA gene in E. coli K12. Plasmid, 63 2: 79-85. doi:10.1016/j.plasmid.2009.11.004
  • Philip, Daniel S., Sarovich, Derek S. and Pemberton, John M. (2009) Complete sequence and analysis of the stability functions of pPSX, a vector that allows stable cloning and expression of Streptomycete genes in Escherichia coli K12. Plasmid, 62 1: 39-43. doi:10.1016/j.plasmid.2009.03.002
John Pemberton
John Pemberton

Dr Huadong Peng

FaBA Future Academic Leader in Fermentation
Australian Institute for Bioengineering and Nanotechnology
Availability:
Available for supervision
Media expert

Dr. Huadong Peng is a Senior Research Fellow at the Australian Institute for Bioengineering and Nanotechnology (AIBN), University of Queensland from Jan 2024. He is also a Future Academic Leader with Australia’s Food and Beverage Accelerator (FaBA), and a group leader at UQ's Biosustainability Hub. He earned his PhD from Monash University in 2018, followed by postdoctoral training at Imperial College London and the Technical University of Denmark until 2023. Prior to his PhD, he received his Master Degree from the University of Chinese Academy of Sciences in 2013 and a Bachelor Degree from China Three Gorges University in 2010. Additionally, he worked as a research associate at Novozymes China from November 2013 to January 2015.

Currently, Dr Peng leads the Yeast Engineering and Synthetic Biology (YESBio) research group, focusing on sustainable biomanufacturing through synthetic biology and metabolic engineering. He works closely with Prof. Esteban Marcellin. His expertise includes developing innovative synthetic biology tools (gene assembly, CRISPR genome editing and biosensor), advanced microbial cell factories, and synthetic microbial communities, as well as optimizing metabolic pathways to improve the production of high-value compounds for use in food ingredients, biochemicals, biofuels, and biomedicines.

Dr Peng has secured A$544K in funding, including grants, awards and scholarships. Dr. Peng has published over 30 peer-reviewed papers in prestigious journals like Nature Microbiology, Nature Chemical Biology, PNAS, etc., H-index 15 (google scholar Sep 2024). He is a recipient of the prestigious Marie Skłodowska-Curie Fellowship, Chinese Government Award for Outstanding Self-financed Students Abroad and has delivered invited presentations at major international conferences.

Dr. Peng is also an Associate Investigator at the ARC Centre of Excellence in Synthetic Biology (CoESB) and actively contributes to the scientific community through editorial roles such as The Innovation, BioDesign Research and mLife.

Dr Peng is looking for highly motivated Honours, Master and Ph.D. students, and highly competitive full scholarship may be provided. The University of Queensland ranks in the top 50 as measured by the Performance Ranking of Scientific Papers for World Universities. The University also ranks 45 in the QS World University Rankings, 52 in the US News Best Global Universities Rankings, 60 in the Times Higher Education World University Rankings and 55 in the Academic Ranking of World Universities.

Huadong Peng
Huadong Peng

Associate Professor Jody Peters

ARC Future Fellow
School of Chemistry and Molecular Biosciences
Faculty of Science
Availability:
Available for supervision

I began my career working in industry for a company which specialised in in vitro diagnostic assays, for both human and veterinary health (AGEN Biomedical). There, I worked as a scientist for almost a decade in numerous departments of the commercialisation pipeline, including manufacturing, product development and research. Following this, I completed a PhD (2010) with the Australian Biosecurity Co-operative Research Centre for Emerging Infectious Disease and have since worked as a virologist at The University of Queensland.

My current research focuses on mosquito-borne virus discovery and the development of innovative vaccine and diagnostic platforms. Together, these research interests have culminated in a greater understanding of the mosquito virome and the development of new approaches for the detection of novel viruses. These include high throughput sequence and antigen-independent assays and the development of suites of unique monoclonal antibodies (mAbs), which in conjunction with deep sequencing platforms, provide comprehensive virus discovery strategies. Using this repertoire, I have been involved in the discovery and extensive genetic and phenotypic characterisation of new mosquito-borne viruses, belonging to more than six viral taxon (including Flaviviridae, Mesoniviridae, Bunyavirales, Reoviridae, Negevirus, Nodaviridae).

Harnessing the unique mosquito-specific growth restriction of the insect-specific flaviviruses that we discovered, my research now focuses on the application of these viruses to the development of novel, safe vaccines and diagnostics for multiple pathogenic flaviviruses.

Jody Peters
Jody Peters

Professor Allison Pettit

Director, Mater Research Institute - UQ
Faculty of Health, Medicine and Behavioural Sciences
Affiliate of Centre for Extracellular Vesicle Nanomedicine
Centre for Extracellular Vesicle Nanomedicine
Faculty of Health, Medicine and Behavioural Sciences
Availability:
Available for supervision
Media expert

Professor Pettit leads the Bones and Immunology Research Group at Mater Research Institute-UQ and is Director of Biomedical Research for Mater Research. Professor Pettit has led multidisciplinary research discovering intersecting biological mechanisms across the fields of immunology, rheumatology, cancer biology, haematology and bone biology. Professor Pettit is currently a UQ Amplify recipient associated with an ARC Future Fellowship, 2017-2020 and CIA on an NHMRC Ideas Grant, 2022-25. Major contributions led by Professor Pettit include the paradigm shifting discovery of a novel population of resident macrophages, osteal macrophages (osteomacs), and their role in promoting bone formation and bone regeneration after injury. Her team have published over 17 manuscripts based on this original discovery (with over 1700 citations) including translation of this basic research discovery toward eluciating novel disease mechanism from cancer bone metastasis to osteoporosis. This also led to the novel discovery of bone marrow resident macrophage contributions to supporting blood stem cells niches and the key role that these cells play in protecting this vital niche from cancer therapies. Bone marrow and specifically haematopoietic stem cell damage is one of the most serious and life-threatening side effects of cancer therapies. Here discoveries are cited in over 117 patent documents and she is currently collaborating with a major pharmaceutical partner.

Professor Pettit's leadership and achievements have been recognised through multiple awards including the 2019 UQ Faculty of Medicine Leader of the Year (Academic), Women in Technology 2018 Life Sciences Outstanding Achievement Award and becoming a Fellow of the American Society of Bone and Mineral Research. Professor Pettit has been invited to give numerous presentations at national and international conferences including Seoul Symposium on Bone Health, Asia-Pacific League of Associations for Rheumatology Congress and a prestigious American Society of Bone and Mineral Research Meet-the-Professor session. Professor Pettit is and Associate Editor for the Journal of Bone and Mineral Research, is an past Council member for the Australian and New Zealand Bone and Mineral Society, and chairs or serves on numerous committees including the Association of Australian Medical Research Institutes Gender Equity, Diversity and Inclusion Committee. PhD candidates under Professor Pettit's supervision have all been supported by scholarships (including 2 x NHMRC), received numerous local and national awards (e.g. Dr Alexander, ASMR QLD Premier Postgraduate Award, 2011 and Dr Lena Batoon won the UQ Faculty of Medicine Graduate of the Year Award, 2021), all had high quality first author publications at completion and 2 received UQ Dean’s Commendations.

Allison Pettit
Allison Pettit

Dr Sang Phan

Research Fellow
Centre for Mined Land Rehabilitation
Faculty of Engineering, Architecture and Information Technology
Availability:
Available for supervision

Dr Sang Phan work combines research in forest ecology and management with significant experience as a practitioner in project implementation and a community development worker. Dr. Phan’s expertise includes carbon sequestration in terrestrial and coastal ecosystems (such as mangrove forests), sustainable forestry practices, and the valuation of ecosystem services. He translates this expertise into practical outcomes by leading forest restoration programs, designing climate change mitigation projects such as REDD+ and agroforestry carbon initiatives, and improving environmental monitoring techniques. A key aspect of his approach involves working directly with local communities and stakeholders, coordinating development projects, and delivering targeted training to build local capacity for sustainable land management and livelihood enhancement.

Sang Phan
Sang Phan

Dr Duy Phan

Research Fellow
Institute for Molecular Bioscience
Availability:
Available for supervision

I got my BSc degree from the University of Natural Sciences in Vietnam. I spent the next two years working on characterisation of multi-drug resistant Mycobacterium tuberculosis with Dr Maxine Caws at the Oxford University Clinical Research Unit in Ho Chi Minh City, Vietnam. I went to the Wellcome Trust Sanger Institute and the University of Cambridge, UK to do my PhD in Prof. John Wain lab where I studied molecular mechanisms affecting the stability of IncHI1 multidrug resistant plasmids in Salmonella Typhi. I then moved to Australia to join the group of Prof. Mark Schembri at the School of Chemistry and Molecular Biosciences, University of Queensland. I am now working on identifying novel virulent factors in uropathogenic E. coli, especially in the newly emerged but globally spread ST131 clone, using high-throughput transposon mutagenesis and next-gen sequencing. I also maintain my interest in plasmid biology and have started projects to study multidrug resistant plasmids carrying blaCTX-M-15 or blaNDM-1 resistant genes.

Duy Phan
Duy Phan

Dr Giovanni Pietrogrande

Research Fellow/Senior Research officer
Australian Institute for Bioengineering and Nanotechnology
Availability:
Available for supervision

Dr Giovanni Pietrogrande obtained his PhD from the University of Newcastle. Here he explored how different brain processes are affected by the activation of microglia, the immune cells resident within our brain. In particular his work shows that microglia mediated inflammation has a pivotal role in neuronal loss following brain ischemic injury. He has developed an entirely new method to recreate the human brain in vitro using organoid technology and is utilizing these advanced organoids to gain novel insights into the pathophysiology of neuroinflammatory diseases.

In late 2019 he joined the Stem Cell Engineering lab at the Australian Institute for Bioengineering and Nanotechnology in Queensland. Now he uses and improves cutting-edge techniques for CRISPR-Cas9 mediated gene editing to modify the genome of induced pluripotent stem cells and generate brain and spinal cord organoids to model neurological diseases and evaluate potential treatments.

Dr. Pietrogrande has also established collaborations with biotechs and startups, employing genetic engineering to modify cells for product development and organoid-based compound screening. Additionally, he provides consultancy services for Stemcore and Phenomics Australia, both UQ-based facilities, driving advancements in stem cell research.

Giovanni Pietrogrande

Dr Taylor Pini

Lecturer in Veterinary Reproduction
School of Veterinary Science
Faculty of Science
Availability:
Available for supervision
Media expert

Dr Taylor Pini is a lecturer in veterinary reproduction within the School of Veterinary Science. Taylor graduated with a Bachelor of Animal and Veterinary Bioscience (Hons) and a PhD in reproductive biology from The University of Sydney. After her PhD, Taylor undertook postdocs at the Colorado Center for Reproductive Medicine (USA), and with the Gametic Epigenetics Consortium against Obesity (GECKO) at The University of Sydney. Taylor has worked across various aspects of male reproduction using a range of species, including sheep, mice and humans.

Taylor's research focuses on sperm biology and better understanding how both physiological processes and applied interventions impact sperm function, with the ultimate goal of improving outcomes of applied reproductive technologies.

Taylor is a co-host and producer of the science communication podcast Repro Radio.

Looking for a research project? Taylor is currently taking on Summer and Winter Scholarship Students (undergraduate) and Science Honours Students. If you are interested in pursuing a Masters or PhD degree with Taylor as a supervisor, please get in touch by email to discuss current opportunities and scholarship options.

Taylor Pini
Taylor Pini

Professor Michael Piper

Professor and Deputy Head of School
School of Biomedical Sciences
Faculty of Health, Medicine and Behavioural Sciences
Affiliate Professor of Queensland Brain Institute
Queensland Brain Institute
Faculty of Health, Medicine and Behavioural Sciences
Availability:
Available for supervision

I graduated from The University of Tasmania, and received my PhD in Developmental Biology from The University of Queensland in 2003. My PhD, performed at the Institute for Molecular Bioscience with Prof. Melissa Little, centred on understanding the cellular and molecular mechanisms underlying embryonic kidney development. My first postdoc was performed with Prof. Christine Holt at The University of Cambridge, UK, where I studied the mechanisms by which axonal growth cones navigate to their targets in the brain, using the frog Xenopus laevis as a model system. In my second postdoctoral position, with Prof. Linda Richards at the Queensland Brain Institute at The University of Queensland, my work focussed on understanding the molecular mechanisms of neural progenitor cell specification in the developing cerebral cortex. In late 2010, I took up a joint position with the Queensland Brain Institute and The School of Biomedical Sciences (SBMS) to continue my research into the mechanisms underlying neural stem cell differentiation. I have held numerous fellowships during my career, including an NHMRC Howard Florey Fellowship, an NHMRC CDF and an ARC Future Fellowship. I currently hold a continuing Teaching and Research position within SBMS, and am currently the Director for Higher Degree Research Training at SBMS.

Michael Piper
Michael Piper

Professor Amirali Popat

Affiliate of Centre for Extracellular Vesicle Nanomedicine
Centre for Extracellular Vesicle Nanomedicine
Faculty of Health, Medicine and Behavioural Sciences
Professor
School of Pharmacy and Pharmaceutical Sciences
Faculty of Health, Medicine and Behavioural Sciences
Availability:
Available for supervision

Research Interests

  • Advanced Drug Delivery and Nanomedicine 1.Advanced drug delivery methods (controlled release dosage forms such as tablets, granules and microspheres) 2. Biomaterials as next generation adjuvant for vaccine delivery 3. Surface modified nanomaterials (Silica, Polymer, Liposomes) 4. Programmable nanoparticales for oral drug delivery and targeting 5. Translocation of nanoparticles after oral drug delivery (In-vitro and In-vivo)

Qualifications

  • Master of Pharmaceutical Science, Gujarat University
  • Bachelor of Pharmacy, Gujarat University
Amirali Popat
Amirali Popat

Dr Lisa Pope

Affiliate of ARC Training Centre for Bioplastics and Biocomposites
ARC Training Centre for Bioplastics and Biocomposites
Faculty of Engineering, Architecture and Information Technology
Centre Manager – ARC Industrial Transformation Training Centre for Bioplastics and Biocomposites
School of Chemical Engineering
Faculty of Engineering, Architecture and Information Technology
Availability:
Not available for supervision

I have a strong interest in applied research, using information to improve policy. I have a broad interest in applying population genetics to the management of wild populations, particularly through a better understanding of dispersal.

Lisa Pope
Lisa Pope

Professor Hugh Possingham

Affiliate of Centre for Marine Science
Centre for Marine Science
Faculty of Science
Affiliate of Centre for Biodiversity and Conservation Science
Centre for Biodiversity and Conservation Science
Faculty of Science
V-C Senior Research Fellow
School of the Environment
Faculty of Science
Availability:
Available for supervision
Media expert

Hugh Possingham's research interests are in conservation research, operations research and ecology. More specifically his lab works on problems to secure the world's biological diversity: efficient nature reserve design, habitat reconstruction, optimal monitoring, optimal management of populations for conservation, cost-effective conservation actions for threatened species, pest control and population harvesting, survey methods for detecting bird decline, bird conservation ecology, environmental accounting and metapopulation dynamics. He has always been actively involved in conservation policy and advocacy - to learn how listen to "The 2023 Univ Canberra Krebs lecture on Science, Maths and Environmental Policy - https://www.youtube.com/watch?v=Ix2_UamShUw"

Hugh is 40% UQ in the Centre for Biodiversity and Conservation Science to our website homepage (https://cbcs.centre.uq.edu.au/); 10% Accounting for Nature and 10% co-chair of the national Biodiversity Council. He sits on c30 other boards and committees pro bono.

His research projects are in the field of decision theory in conservation biology, including co-developing Marxan MaPP - Marxan (marxansolutions.org):

  • Biodiversity offsetting
  • Biodiversity markets
  • Conservation policy at all levels of government
  • Reserve design, biodiversity management and fire regime management
  • Population viability analysis (PVA) - including the development of ALEX
  • Pollination ecology
  • Metapopulation dynamics
  • Ecological economics
  • Optimal monitoring and environmental accounts
  • Stochastic modelling
  • Biodiversity and climate change
  • Population dynamics of marine organisms
  • Marine reserve design
  • Marine population dynamics
  • Avian community ecology
  • Edge effects and fragmentation
  • Landscape ecology
  • Behavioural and population ecology of parasitoids
Hugh Possingham
Hugh Possingham

Dr Gilbert Price

Associate Professor in Palaeontology
School of the Environment
Faculty of Science
Availability:
Available for supervision
Media expert

Gilbert Price is a Senior Lecturer in Palaeontology at The University of Queensland. He is a vertebrate palaeoecologist and geochronologist, particularly interested in the evolution and emergence of our planet’s unique ecosystems and fauna, and their response to prehistoric climatic changes. His major research focus has been on the development of palaeoecological models for Australia’s Cenozoic, especially the Quaternary megafauna. Critically, this also involves the production of reliably-dated records for the fossils that he studies. You can follow Gilbert on Twitter (@TheFatWombat) and read his reserach blog at www.diprotodon.com.

Gilbert Price
Gilbert Price

Dr Lars Puiman

Woodside Future Leader in Gas Fermentation
Australian Institute for Bioengineering and Nanotechnology
Availability:
Available for supervision

Scaling-up fermentation processes is not straightforward due to the emergence of concentration gradients at scale. For gas fermentation processes, with CO2, CO and CH4 and H2, scaling is even more challenging as high mass transfer rates need to be obtained. In his work, Lars is developing a framework to reliably scale-up gas fermentation processes, considering both mass transfer and concentration gradients. We aim to employ mechanistic models, combined with wet-lab data, to develop relationships and fluid dynamic (CFD) models to estimate the fermentation performance at industrial scale. He specialised in topics like bioreactor and bioprocess design, bioprocess scale-up/scale-down, mass transfer and transport phenomena, metabolic and kinetic modelling and simulation techniques.

Lars Puiman
Lars Puiman

Dr Sreekar Rachakonda

Postdoctoral Research Fellow
School of the Environment
Faculty of Science
Availability:
Available for supervision

Sreekar’s research focuses on using ecological theory to inform conservation decision making. He is interested in a broad range of topics, including spatial conservation planning, evidence-based conservation policy, community assembly rules, extinction synergies, and land-use management. A big question that drives his research is how to address the twin crises of climate change and biodiversity loss. His current research is centred around studying the environmental risks associated with mining and mineral processing.

He serves as an Associate Editor for the Journal of Applied Ecology and has spent the past 15 years at universities across Australia, China, Czechia, India and Singapore. Sreekar is an avid birder and enjoys this aspect of his work both professionally and recreationally.

Sreekar Rachakonda
Sreekar Rachakonda

Dr Lachlan Rash

Affiliate of Centre for Innovation in Pain and Health Research (CIPHeR)
Centre for Innovation in Pain and Health Research
Faculty of Health, Medicine and Behavioural Sciences
Associate Professor
School of Biomedical Sciences
Faculty of Health, Medicine and Behavioural Sciences
Availability:
Available for supervision

Dr Rash completed his Honours (1996) and PhD (2001) on the pharmacological activity of spider venoms at the Department of Pharmacology, Monash University in the group of Professor Wayne Hodgson. After 18 months as an Assistant Lecturer at Monash Pharmacology, he was awarded an INSERM/NH&MRC Post-doctoral Fellowship to work in the group of Prof. Michel Lazdunski at the Institute of Molecular and Cellular Pharmacology in Antibes, France. It was here that he became involved in discovery and characterisation of venom peptides that act on acid-sensing ion channels, voltage-gated sodium channels and other pain related channels. Upon returning to Australia to the Institute for Molecular Bioscience (The University of Queensland), he established an ASIC research program and was awarded an NH&MRC project grant as CIA to investigate the molecular basis of the interaction of PcTx1 and APETx2 with ASIC1a and ASIC3 respectively. Dr Rash was appointed as senior lecturer in Pharmacology in the School of Biomedical Sciences in early 2016 where he continues his research on identifying novel bioactive peptides from animal venoms, unravelling the molecular basis for their specific channel interactions and their use as research tools and potential therapeutic lead molecules.

Lachlan Rash
Lachlan Rash

Dr Oliver Rawashdeh

Sr. Lecturer in Biomedical Sciences
School of Biomedical Sciences
Faculty of Health, Medicine and Behavioural Sciences
Availability:
Available for supervision
Media expert

I received my Bachelor's in Biology (2001) from Yarmouk University in Jordan, followed by postgraduate degrees from the University of Houston in Houston-Texas (2002-2007). My studies are integrative in nature, joining the best of both the Neuroscience world and Circadian Biology (the study of biological clocks). In the laboratory of Prof. Arnold Eskin, I investigated how processes as complex as learning and memory are modulated by biological clocks i.e. the circadian (about 24 hours) system, using Aplysia californica as the experimental model. After completing my Master's in Science in 2005, my research focused on the mechanism by which biological clocks modulate learning and memory. This work was performed in the laboratories of Prof. Gregg Cahill and Prof. Greg Roman, experts in chronobiology and behavioral neuroscience, respectively. Using Zebrafish as a model system, I investigated the role of melatonin, a night-time restricted hormonal signal, in modulating long-term memory consolidation. My findings, published in Science in 2007, shows that the circadian system via the cyclic night-time confined synthesis/release of melatonin “the hormone of darkness” functions as a modulator, shaping daily variations in the efficiency by which memories are processed. After receiving my Ph.D. in 2007, I joined as a postdoctoral fellow the laboratory of the pharmacologist and melatonin researcher Prof. Margarita Dubocovich. My postdoctoral work engaged in elucidating the role of melatonin in circadian physiology and pharmacology during development and ageing in rodents (Mus musculus) and non-human primates (Macaca mulatta) at the Feinberg School of Medicine (Northwestern University-Chicago) and the State University of New York (SUNY). From 2010-2015, I held a teaching/research position in the Dr. Senckenbergische Anatomy and the Dept. of Neurology at the Goethe University in Frankfurt-Germany. During this time, I was involved in teaching gross human anatomy while continuing my endeavor in understanding the mechanistics involved in shaping memory processes (acquisition, consolidation and retrieval) by the circadian system.

Oliver Rawashdeh
Oliver Rawashdeh

Dr April Reside

Affiliate of Centre for Biodiversity and Conservation Science
Centre for Biodiversity and Conservation Science
Faculty of Science
Senior Lecturer in AgroEcology
School of Agriculture and Food Sustainability
Faculty of Science
Senior Lecturer in AgroEcology
School of the Environment
Faculty of Science
Availability:
Available for supervision
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April Reside is a lecturer in the School of the Environment and School of Agriculture and Food Sustainability, affiliated with the Centre for Biodiversity and Conservation Science.

Dr Reside's research encompasses ecology, conservation, and policy; investigating refuges and refugia; and recovery actions and their costs for Australia’s threatened species. April also works on conservation of woodland bird communities, the impact of climate change on biodiversity, and strategies for climate change adaptation. This work has involved applying conservation planning frameworks to identify spatial priorities for climate change adaptation for biodiversity and carbon sequestration.

April has a particular fascination of flying vertebrates, and has worked on bats on three continents and nine countries. She worked as a field ecologist for non-government organisations before her PhD on understanding potential impacts of climate change on Australian tropical savanna birds. She adapted species distribution modelling techniques to account for temporal and spatial variability in the distributions of highly vagile bird species. These dynamic species distribution models take into account species’ responses to fluctuations in weather and short-term climatic conditions rather than long-term climate averages. In her first postdoctoral position, Dr Reside modelled the distribution of c.1700 vertebrates across Australia at a fine resolution, and located the future location of suitable climate for all these species for each decade until 2085. From this, she identified hotspots across Australia where species were moving to in order to track their suitable climate, informing the IUCN SSC Guidelines for Assessing Species’ Vulnerability to Climate Change by the IUCN Species Survival Commission.

April has been involved in conservation of the Black-throated Finch for over 12 years, and is Chair of the Black-throated Finch Recovery Team. She has served on Birdlife Australia's Research and Conservation Committee and Threatened Species Committee; and the Science Committee for the Invasive Species Council.

April Reside
April Reside

Dr Raphael Ricci

Affiliate of Centre for RNA in Neuroscience
Centre for RNA in Neuroscience
Faculty of Health, Medicine and Behavioural Sciences
Honorary Fellow
Mater Research Institute-UQ
Faculty of Health, Medicine and Behavioural Sciences
Availability:
Available for supervision
Media expert

I am an early career neuroscientist investigating the capacity for neural progenitor cell behaviour to shape neural circuit formation, maintenance and function during development and throughout adulthood. More specifically, the role of oligodendrocyte progenitors and myelin in brain circuit formation and maintenance. My research examines the brain under health and pathological conditions by performing manipulations relevant to autism spectrum disorder, multiple sclerosis and schizophrenia. While under the supervision of Prof Helen Cooper at the Queensland Brain Institute – University of Queensland - I studied how the WRC-Cyfip1-FMRP protein network impaired apical radial glial progenitor function and neural migration, leading to cortical malformation and Autism-like traits in mice. During my PhD at University of Tasmania and under the supervision of Prof Kaylene Young, I studied the effect of neuronal activity on cells of the oligodendrocyte lineage. I found that voltage-gated calcium channels are critical for oligodendrocyte progenitor cell survival and characterised the impact of kainite receptor dysfunction on neuropathology and behaviour in mice. Currently under the supervision of Dr Carlie Cullen I am using transgenic mice strategies to determine how aberrant myelination can contribute to onset of neuropsychiatric and neurodegenerative disorders. I am also using mouse models of demyelination to investigate the effect of infectious diseases such as COVID19 and influenza on oligodendrocyte lineage cell function and the impact for myelin repair and multiple sclerosis disease progression. I have a long-standing interest in neuroscience research, that extends from understanding how brain function is regulated during development and in healthy ageing, and the dysregulated signalling pathways that enable neurodevelopmental and neurodegenerative disorders.

Raphael Ricci
Raphael Ricci