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2017 Journal Article Landscape of histone modifications in a sponge reveals the origin of animal cis-regulatory complexityGaiti, Federico, Jindrich, Katia, Fernandez-Valverde, Selene L., Roper, Kathrein E., Degnan, Bernard M. and Tanurdzic, Milos (2017). Landscape of histone modifications in a sponge reveals the origin of animal cis-regulatory complexity. Elife, 6 e22194. doi: 10.7554/eLife.22194 |
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2017 Journal Article De novo transcriptome assembly reveals high transcriptional complexity in Pisum sativum axillary buds and shows rapid changes in expression of diurnally regulated genesKerr, Stephanie C., Gaiti, Federico, Beveridge, Christine A. and Tanurdzic, Milos (2017). De novo transcriptome assembly reveals high transcriptional complexity in Pisum sativum axillary buds and shows rapid changes in expression of diurnally regulated genes. BMC Genomics, 18 (1) 221, 221. doi: 10.1186/s12864-017-3577-x |
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2015 Journal Article Dynamic and Widespread lncRNA Expression in a Sponge and the Origin of Animal ComplexityGaiti, Federico, Fernandez-Valverde, Selene L., Nakanishi, Nagayasu, Calcino, Andrew D., Yanai, Itai, Tanurdzic, Milos and Degnan, Bernard M. (2015). Dynamic and Widespread lncRNA Expression in a Sponge and the Origin of Animal Complexity. Molecular Biology and Evolution, 32 (9), 2367-2382. doi: 10.1093/molbev/msv117 |
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2015 Journal Article The histone methyltransferase SDG8 mediates the epigenetic modification of light and carbon responsive genes in plantsLi, Ying, Mukherjee, Indrani, Thum, Karen E., Tanurdzic, Milos, Katari, Manpreet S., Obertello, Mariana, Edwards, Molly B., McCombie, W. Richard, Martienssen, Robert A. and Coruzzi, Gloria M. (2015). The histone methyltransferase SDG8 mediates the epigenetic modification of light and carbon responsive genes in plants. Genome Biology, 16 (79) 79, 1-15. doi: 10.1186/s13059-015-0640-2 |
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2014 Journal Article Differential sRNA regulation in leaves and roots of sugarcane under water depletionThiebaut, Flavia, Grativol, Clı´cia, Tanurdzic, Milos, Carnavale-Bottino, Mariana, Vieira, Tauan, Motta, Mariana Romeiro, Rojas, Cristian, Vincentini, Renato, Chabregas, Sabrina Moutinho, Hemerly, Adriana Silva, Martienssen, Robert A. and Ferreira, Paulo Cavalcanti Gomes (2014). Differential sRNA regulation in leaves and roots of sugarcane under water depletion. PLoS One, 9 (4) e93822, e93822.1-e93822.17. doi: 10.1371/journal.pone.0093822 |
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2013 Journal Article Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana rootsVidal, Elena A., Moyano, Tomás C., Krouk, Gabriel, Katari, Manpreet S., Tanurdzic, Milos, McCombie, W. Richard, Coruzzi, Gloria M. and Gutierrez, Rodrigo A. (2013). Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 14 (1) 701, 701.1-701.15. doi: 10.1186/1471-2164-14-701 |
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2012 Journal Article Computational identification and analysis of novel sugarcane microRNAsThiebaut, Flavia, Grativol, Clicia, Carnavale-Bottino, Mariana, Rojas, Cristian Antonio, Tanurdzic, Milos, Farinelli, Laurent, Martienssen, Robert A., Hemerly, Adriana Silva and Gomes Ferreira, Paulo Cavalcanti (2012). Computational identification and analysis of novel sugarcane microRNAs. BMC Genomics, 13 (1) 290, 290.1-290.14. doi: 10.1186/1471-2164-13-290 |
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2011 Journal Article The Selaginella Genome Identifies Genetic Changes Associated with the Evolution of Vascular PlantsBanks, Jo Ann, Nishiyama, Tomoaki, Hasebe, Mitsuyasu, Bowman, John L., Gribskov, Michael, dePamphilis, Claude, Albert, Victor A., Aono, Naoki, Aoyama, Tsuyoshi, Ambrose, Barbara A., Ashton, Neil W., Axtell, Michael J., Barker, Elizabeth, Barker, Michael S., Bennetzen, Jeffrey L., Bonawitz, Nicholas D., Chapple, Clint, Cheng, Chaoyang, Correa, Luiz Gustavo Guedes, Dacre, Michael, DeBarry, Jeremy, Dreyer, Ingo, Elias, Marek, Engstrom, Eric M., Estelle, Mark, Feng, Liang, Finet, Cedric, Floyd, Sandra K., Frommer, Wolf B. ... Grigoriev, Igor V. (2011). The Selaginella Genome Identifies Genetic Changes Associated with the Evolution of Vascular Plants. Science, 332 (6032), 960-963. doi: 10.1126/science.1203810 |
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2010 Journal Article Arabidopsis thaliana chromosome 4 replicates in two phases that correlate with chromatin stateLee, Tae-Jin, Pascuzzi, Pete E., Settlage, Sharon B., Shultz, Randall W., Tanurdzic, Milos, Rabinowicz, Pablo D., Menges, Margit, Zheng, Ping, Main, Dorrie, Murray, James A. H., Sosinski, Bryon, Allen, George C., Martienssen, Robert A., Hanley-Bowdoin, Linda, Vaughn, Matthew W. and Thompson, William F. (2010). Arabidopsis thaliana chromosome 4 replicates in two phases that correlate with chromatin state. PLoS Genetics, 6 (6) e1000982, e1000982.1-e1000982.18. doi: 10.1371/journal.pgen.1000982 |
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2009 Journal Article Epigenetic reprogramming and small RNA silencing of transposable elements in pollenSlotkin, R. Keith, Vaughn, Matthew, Borges, Filipe, Tanurdzic, Milos, Becker, Joerg D., Feijo, Jose A. and Martienssen, Robert A. (2009). Epigenetic reprogramming and small RNA silencing of transposable elements in pollen. Cell, 136 (3), 461-472. doi: 10.1016/j.cell.2008.12.038 |
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2008 Journal Article Epigenomic consequences of immortalized plant cell suspension cultureTanurdzic, Milos, Vaughn, Matthew W., Jiang, Hongmei, Lee, Tae-Jin, Slotkin, R. Keith, Sosinski, Bryon, Thompson, William F., Doerge, R. W. and Martienssen, Robert A. (2008). Epigenomic consequences of immortalized plant cell suspension culture. PLoS Biology, 6 (12), 2880-2895. doi: 10.1371/journal.pbio.0060302 |
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2008 Journal Article ABAP1 is a novel plant Armadillo BTB protein involved in DNA replication and transcriptionMasuda, Hana Paula, Cabral, Luiz Mors, De Veylder, Lieven, Tanurdzic, Milos, Engler, Janice de Almeida, Geelen, Danny, Inze, Dirk, Martienssen, Robert A., Ferreira, Paulo C. G. and Hemerly, Adriana S. (2008). ABAP1 is a novel plant Armadillo BTB protein involved in DNA replication and transcription. EMBO Journal, 27 (20), 2746-2756. doi: 10.1038/emboj.2008.191 |
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2008 Journal Article Systems approach identifies an organic nitrogen-responsive gene network that is regulated by the master clock control gene CCA1Gutierez, Rodrigo A., Stokes, Trevor L., Thum, Karen, Xu, Xiaodong, Obertello, Mariana, Katari, Manpreet S., Tanurdzic, Milos, Dean, Alexis, Nero, Dannion C., McClung, C. Robertson and Coruzzi, Gloria M. (2008). Systems approach identifies an organic nitrogen-responsive gene network that is regulated by the master clock control gene CCA1. Proceedings of the National Academy of Sciences of the United States of America, 105 (12), 4939-4944. doi: 10.1073/pnas.0800211105 |
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2007 Journal Article Epigenetic natural variation in Arabidopsis thalianaVaughn, Matthew W., Tanurdzic, Milos, Lippman, Zachary, Jiang, Hongmei, Carrasquillo, Robert, Rabinowicz, Pablo D., Dedhia, Neilay, McCombie, W. Richard, Agier, Nicolas, Bulski, Agnes, Colot, Vincent, Doerge, R. W. and Martienssen, Robert A. (2007). Epigenetic natural variation in Arabidopsis thaliana. PloS Biology, 5 (7), 1617-1629. doi: 10.1371/journal.pbio.0050174 |
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2005 Journal Article Replication, repair, and reactivationVaughn, Matthew W., Tanurdzic, Milos and Martienssen, Rob (2005). Replication, repair, and reactivation. Developmental Cell, 9 (6), 724-725. doi: 10.1016/j.devcel.2005.11.011 |
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2005 Journal Article Construction of a bacterial artificial chromosome library from the spikemoss Selaginella moellendorffii: a new resource for plant comparative genomicsWang, Wenming, Tanurdzic, Milos, Luo, Meizhong, Sisneros, Nicholas, Kim, Hye Ran, Weng, Jing-Ke, Kudrna, Dave, Mueller, Christopher, Arumuganathan, K., Carlson, John, Chapple, Clint, de Pamphilis, Claude, Mandoli, Dina, Tomkins, Jeff, Wing, Rod A. and Banks, Jo Ann (2005). Construction of a bacterial artificial chromosome library from the spikemoss Selaginella moellendorffii: a new resource for plant comparative genomics. BMC Plant Biology, 5 (1) 10, 10.1-10.8. doi: 10.1186/1471-2229-5-10 |
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2005 Journal Article Functional analysis and comparative genomics of expressed sequence tags from the lycophyte Selaginella moellendorffiiWeng, Jing-Ke, Tanurdzic, Milos and Chapple, Clint (2005). Functional analysis and comparative genomics of expressed sequence tags from the lycophyte Selaginella moellendorffii. BMC Genomics, 6 (7-8) 85, 85.1-85.13. doi: 10.1186/1471-2164-6-85 |
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2004 Journal Article A systemic gene silencing method suitable for high throughput, reverse genetic analyses of gene function in fern gametophytesRutherford, George, Tanurdzic, Milos, Hasebe, Mitsuyasu and Banks, Jo Ann (2004). A systemic gene silencing method suitable for high throughput, reverse genetic analyses of gene function in fern gametophytes. BMC Plant Biology, 4 (1) 6. doi: 10.1186/1471-2229-4-6 |
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2004 Journal Article Polyglutamine-encoding microsatellite contributes to LMW GS diversity in Triticum monococcumTanurdzic, M., Obreht, D., Vapa, L. and Davidovic, M. (2004). Polyglutamine-encoding microsatellite contributes to LMW GS diversity in Triticum monococcum. Cereal Research Communications, 32 (3), 301-308. |
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2004 Journal Article Sex-determining mechanisms in land plantsTanurdzic, Milos and Banks, Jo Ann (2004). Sex-determining mechanisms in land plants. Plant Cell, 16 (Supplement 1), S61-S71. doi: 10.1105/tpc.016667 |
