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2021 Journal Article Whole proteome screening and identification of potential epitopes of SARS-CoV-2 for vaccine design-an immunoinformatic, molecular docking and molecular dynamics simulation accelerated robust strategyEzaj, Md. Muzahid Ahmed, Junaid, Md., Akter, Yeasmin, Nahrin, Afsana, Siddika, Aysha, Afrose, Syeda Samira, Nayeem, S. M. Abdul, Haque, Md. Sajedul, Moni, Mohammad Ali and Hosen, S. M. Zahid (2021). Whole proteome screening and identification of potential epitopes of SARS-CoV-2 for vaccine design-an immunoinformatic, molecular docking and molecular dynamics simulation accelerated robust strategy. Journal of Biomolecular Structure and Dynamics, 40 (14), 1-26. doi: 10.1080/07391102.2021.1886171 |
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2021 Journal Article Identifying the function of methylated genes in Alzheimer’s disease to determine epigenetic signatures: a comprehensive bioinformatics analysisRahman, Md Rezanur, Islam, Tania, Gov, Esra, Quinn, Julian M.W. and Moni, Mohammad Ali (2021). Identifying the function of methylated genes in Alzheimer’s disease to determine epigenetic signatures: a comprehensive bioinformatics analysis. Experimental Results, 2 e9, 1-13. doi: 10.1017/exp.2020.65 |
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2021 Journal Article Computational formulation and immune dynamics of a multi-peptide vaccine candidate against Crimean-Congo hemorrhagic fever virusKhan, Md. Shakil Ahmed, Nain, Zulkar, Syed, Shifath Bin, Abdulla, Faruq, Moni, Mohammad Ali, Sheam, Md. Moinuddin, Karim, Mohammad Minnatul and Adhikari, Utpal Kumar (2021). Computational formulation and immune dynamics of a multi-peptide vaccine candidate against Crimean-Congo hemorrhagic fever virus. Molecular and Cellular Probes, 55 101693. doi: 10.1016/j.mcp.2020.101693 |
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2021 Journal Article Causes of blindness and vision impairment in 2020 and trends over 30 years, and prevalence of avoidable blindness in relation to VISION 2020: The Right to Sight: an analysis for the Global Burden of Disease StudyBourne, Rupert R.A., Steinmetz, Jaimie D., Saylan, Mete, Mersha, Abera M., Weldemariam, Abrha Hailay, Wondmeneh, Temesgen Gebeyehu, Sreeramareddy, Chandrashekhar T., Pinheiro, Marina, Yaseri, Mehdi, Yu, Chuanhua, Zastrozhin, Mikhail Sergeevich, Zastrozhina, Anasthasia, Zhang, Zhi-Jiang, Zimsen, Stephanie R.M., Yonemoto, Naohiro, Tsegaye, Gebiyaw Wudie, Vu, Giang Thu, Vongpradith, Avina, Renzaho, Andre M.N., Sorrie, Muluken Bekele, Shaheen, Amira A., Shiferaw, Wondimeneh Shibabaw, Skryabin, Valentin Yurievich, Skryabina, Anna Aleksandrovna, Saya, Ganesh Kumar, Rahimi-Movaghar, Vafa, Shigematsu, Mika, Sahraian, Mohammad Ali, Naderifar, Homa ... GBD 2019 Blindness and Vision Impairment Collaborators on behalf of the Vision Loss Expert Group of the Global Burden of Disease Study (2021). Causes of blindness and vision impairment in 2020 and trends over 30 years, and prevalence of avoidable blindness in relation to VISION 2020: The Right to Sight: an analysis for the Global Burden of Disease Study. The Lancet Global Health, 9 (2), e144-e160. doi: 10.1016/S2214-109X(20)30489-7 |
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2021 Journal Article Identification of common pathogenetic processes between schizophrenia and diabetes mellitus by systems biology analysisRahman, Md Rezanur, Islam, Tania, Nicoletti, Ferdinando, Petralia, Maria Cristina, Ciurleo, Rosella, Fisicaro, Francesco, Pennisi, Manuela, Bramanti, Alessia, Demirtas, Talip Yasir, Gov, Esra, Islam, Md Rafiqul, Mussa, Bashair M., Moni, Mohammad Ali and Fagone, Paolo (2021). Identification of common pathogenetic processes between schizophrenia and diabetes mellitus by systems biology analysis. Genes, 12 (2) 237, 1-14. doi: 10.3390/genes12020237 |
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2021 Journal Article Onslaught of COVID-19: How did governments react and at what point of the crisis?Uddin, Shahadat, Imam, Tasadduq, Moni, Mohammad Ali and Thow, Anne-Marie (2021). Onslaught of COVID-19: How did governments react and at what point of the crisis?. Population Health Management, 24 (1), 13-19. doi: 10.1089/pop.2020.0138 |
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2021 Journal Article Attribute driven temporal active online community searchDas, Badhan Chandra, Anwar, Md. Musfique, Bhuiyan, Md. Al-Amin, Sarker, Iqbal H., Alyami, Salem A. and Moni, Mohammad Ali (2021). Attribute driven temporal active online community search. IEEE Access, 9, 93976-93989. doi: 10.1109/access.2021.3093368 |
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2021 Journal Article Genome-wide integrative analysis reveals common molecular signatures in blood and brain of alzheimer’s diseaseRahman, Md Rezanur, Islam, Tania, Shahjaman, Md, Rana, Md Humayun Kabir, Holsinger, R. M. Damian, Quinn, Julian M. W., Gov, Esra and Moni, Mohammad Ali (2021). Genome-wide integrative analysis reveals common molecular signatures in blood and brain of alzheimer’s disease. Biointerface Research in Applied Chemistry, 11 (2), 8686-8701. doi: 10.33263/BRIAC112.86868701 |
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2021 Journal Article A computational approach to design potential siRNA molecules as a prospective tool for silencing nucleocapsid phosphoprotein and surface glycoprotein gene of SARS-CoV-2Chowdhury, Umar Faruq, Sharif Shohan, Mohammad Umer, Hoque, Kazi Injamamul, Beg, Mirza Ashikul, Sharif Siam, Mohammad Kawsar and Moni, Mohammad Ali (2021). A computational approach to design potential siRNA molecules as a prospective tool for silencing nucleocapsid phosphoprotein and surface glycoprotein gene of SARS-CoV-2. Genomics, 113 (1 Part 1), 331-343. doi: 10.1016/j.ygeno.2020.12.021 |
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2021 Journal Article Ensemble of Convolutional Neural Networks to diagnose Acute Lymphoblastic Leukemia from microscopic imagesMondal, Chayan, Hasan, Md. Kamrul, Ahmad, Mohiuddin, Awal, Md. Abdul, Jawad, Md. Tasnim, Dutta, Aishwariya, Islam, Md. Rabiul and Moni, Mohammad Ali (2021). Ensemble of Convolutional Neural Networks to diagnose Acute Lymphoblastic Leukemia from microscopic images. Informatics in Medicine Unlocked, 27 100794, 100794. doi: 10.1016/j.imu.2021.100794 |
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2021 Journal Article A deep convolutional neural network method to detect seizures and characteristic frequencies using Epileptic Electroencephalogram (EEG) dataRashed-Al-Mahfuz, Md., Moni, Mohammad Ali, Uddin, Shahadat, Alyami, Salem A., Summers, Matthew A. and Eapen, Valsamma (2021). A deep convolutional neural network method to detect seizures and characteristic frequencies using Epileptic Electroencephalogram (EEG) data. IEEE Journal of Translational Engineering in Health and Medicine, 9 9319690, 1-12. doi: 10.1109/jtehm.2021.3050925 |
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2021 Journal Article Clinically applicable machine learning approaches to identify attributes of Chronic Kidney Disease (CKD) for use in low-cost diagnostic screeningRashed-Al-Mahfuz, Md., Haque, Abedul, Azad, Akm, Alyami, Salem A., Quinn, Julian M. W. and Moni, Mohammad Ali (2021). Clinically applicable machine learning approaches to identify attributes of Chronic Kidney Disease (CKD) for use in low-cost diagnostic screening. IEEE Journal of Translational Engineering in Health and Medicine, 9 4900511, 1-11. doi: 10.1109/jtehm.2021.3073629 |
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2020 Journal Article Gene expression profiling of SARS-CoV-2 infections reveal distinct primary lung cell and systemic immune infection responses that identify pathways relevant in COVID-19 diseaseMoni, Mohammad Ali, Quinn, Julian M. W., Sinmaz, Nese and Summers, Matthew A. (2020). Gene expression profiling of SARS-CoV-2 infections reveal distinct primary lung cell and systemic immune infection responses that identify pathways relevant in COVID-19 disease. Briefings in Bioinformatics, 22 (2), 1324-1337. doi: 10.1093/bib/bbaa376 |
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2020 Journal Article Machine learning and bioinformatics models to identify pathways that mediate influences of welding fumes on cancer progressionRana, Humayan Kabir, Akhtar, Mst. Rashida, Islam, M. Babul, Ahmed, Mohammad Boshir, Lió, Pietro, Huq, Fazlul, Quinn, Julian M. W. and Moni, Mohammad Ali (2020). Machine learning and bioinformatics models to identify pathways that mediate influences of welding fumes on cancer progression. Scientific Reports, 10 (1) 2795, 2795. doi: 10.1038/s41598-020-57916-9 |
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2020 Journal Article A system biological approach to investigate the genetic profiling and comorbidities of type 2 diabetesPodder, Nitun Kumar, Rana, Humayan Kabir, Azam, Md. Shafiul, Rana, Md. Shohel, Akhtar, Mst. Rashida, Rahman, Md Rezanur, Rahman, Md Habibur and Moni, Mohammad Ali (2020). A system biological approach to investigate the genetic profiling and comorbidities of type 2 diabetes. Gene Reports, 21 100830, 1-13. doi: 10.1016/j.genrep.2020.100830 |
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2020 Journal Article Design of novel viral attachment inhibitors of the spike glycoprotein (S) of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) through virtual screening and dynamicsOany, Arafat Rahman, Mia, Mamun, Pervin, Tahmina, Junaid, Md., Hosen, S. M. Zahid and Moni, Mohammad Ali (2020). Design of novel viral attachment inhibitors of the spike glycoprotein (S) of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) through virtual screening and dynamics. International Journal of Antimicrobial Agents, 56 (6) 106177, 106177. doi: 10.1016/j.ijantimicag.2020.106177 |
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2020 Journal Article A machine learning model to identify early stage symptoms of SARS-Cov-2 infected patientsAhamad, Md. Martuza, Aktar, Sakifa, Rashed-Al-Mahfuz, Md., Uddin, Shahadat, Liò, Pietro, Xu, Haoming, Summers, Matthew A., Quinn, Julian M.W. and Moni, Mohammad Ali (2020). A machine learning model to identify early stage symptoms of SARS-Cov-2 infected patients. Expert Systems with Applications, 160 113661. doi: 10.1016/j.eswa.2020.113661 |
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2020 Journal Article Zeolite synthesis from low-cost materials and environmental applications: a reviewKhaleque, Abdul, Alam, Md Masruck, Hoque, Mozammel, Mondal, Shuvodip, Haider, Jahid Bin, Xu, Bentuo, Johir, M. A.H., Karmakar, Aneek Krishna, Zhou, J. L., Ahmed, Mohammad Boshir and Moni, Mohammad Ali (2020). Zeolite synthesis from low-cost materials and environmental applications: a review. Environmental Advances, 2 100019. doi: 10.1016/j.envadv.2020.100019 |
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2020 Journal Article Analysis of topological properties and drug discovery for bipolar disorder and associated diseases: a bioinformatics approachShadhin, Khairul Alam, Hasan, Md. Rakibul, Paul, Bikash Kumar, Ahmed, Kawsar, Moni, Mohammad Ali, Kahrizi, Danial, Bhuyian, Touhid and Ibrahim, Sobhy M. (2020). Analysis of topological properties and drug discovery for bipolar disorder and associated diseases: a bioinformatics approach. Cellular and Molecular Biology, 66 (7), 152-160. doi: 10.14715/cmb/2020.66.7.23 |
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2020 Journal Article Detection of molecular signatures and pathways shared in inflammatory bowel disease and colorectal cancer: A bioinformatics and systems biology approachAl-Mustanjid, Md., Mahmud, S.M. Hasan, Royel, Md. Rejaul Islam, Rahman, Md. Habibur, Islam, Tania, Rahman, Md. Rezanur and Moni, Mohammad Ali (2020). Detection of molecular signatures and pathways shared in inflammatory bowel disease and colorectal cancer: A bioinformatics and systems biology approach. Genomics, 112 (5), 3416-3426. doi: 10.1016/j.ygeno.2020.06.001 |
