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2013

Journal Article

Neisseria gonorrhoeae false-positive result obtained from a pharyngeal swab by using the roche cobas 4800 CT/NG assay in New Zealand in 2012

Upton, Arlo, Bromhead, Collette and Whiley, David M. (2013). Neisseria gonorrhoeae false-positive result obtained from a pharyngeal swab by using the roche cobas 4800 CT/NG assay in New Zealand in 2012. Journal of Clinical Microbiology, 51 (5), 1609-1610. doi: 10.1128/JCM.00485-13

Neisseria gonorrhoeae false-positive result obtained from a pharyngeal swab by using the roche cobas 4800 CT/NG assay in New Zealand in 2012

2013

Journal Article

Detection of novel polyomaviruses, TSPyV, HPyV6, HPyV7, HPyV9 and MWPyV in feces, urine, blood, respiratory swabs and cerebrospinal fluid

Rockett, Rebecca J., Sloots, Theo P., Bowes, Sharleen, O'Neill, Nicholas, Ye, Suifang, Robson, Jenny, Whiley, David M., Lambert, Stephen B., Wang, David, Nissen, Michael D. and Bialasiewicz, Seweryn (2013). Detection of novel polyomaviruses, TSPyV, HPyV6, HPyV7, HPyV9 and MWPyV in feces, urine, blood, respiratory swabs and cerebrospinal fluid. PLoS ONE, 8 (5) e62764, e62764.1-e62764.9. doi: 10.1371/journal.pone.0062764

Detection of novel polyomaviruses, TSPyV, HPyV6, HPyV7, HPyV9 and MWPyV in feces, urine, blood, respiratory swabs and cerebrospinal fluid

2013

Journal Article

High-throughput single-nucleotide polymorphism-based typing of shared Pseudomonas aeruginosa strains in cystic fibrosis patients using the Sequenom iPLEX platform

Syrmis, Melanie W., Moser, Ralf J., Kidd, Timothy J., Hunt, Priscilla, Ramsay, Kay A., Bell, Scott C., Wainwright, Claire E., Grimwood, Keith, Nissen, Michael D., Sloots, Theo P. and Whiley, David M. (2013). High-throughput single-nucleotide polymorphism-based typing of shared Pseudomonas aeruginosa strains in cystic fibrosis patients using the Sequenom iPLEX platform. Journal of Medical Microbiology, 62 (5), 734-740. doi: 10.1099/jmm.0.055905-0

High-throughput single-nucleotide polymorphism-based typing of shared Pseudomonas aeruginosa strains in cystic fibrosis patients using the Sequenom iPLEX platform

2013

Journal Article

Comparison of the cobas 4800 CT/NG test with culture for detecting neisseria gonorrhoeae in genital and nongenital specimens in a low-prevalence population in New Zealand

Bromhead, Collette, Miller, Amanda, Jones, Mark and Whiley, David (2013). Comparison of the cobas 4800 CT/NG test with culture for detecting neisseria gonorrhoeae in genital and nongenital specimens in a low-prevalence population in New Zealand. Journal of Clinical Microbiology, 51 (5), 1505-1509. doi: 10.1128/JCM.03223-12

Comparison of the cobas 4800 CT/NG test with culture for detecting neisseria gonorrhoeae in genital and nongenital specimens in a low-prevalence population in New Zealand

2013

Journal Article

Polymerase chain reaction-based screening for the ceftriaxone-resistant Neisseria gonorrhoeae F89 strain

Goire, N., Lahra, M. M., Ohnishi, M., Hogan, T., Liminios, A. E., Nissen, M. D., Sloots, T. P. and Whiley, D. M. (2013). Polymerase chain reaction-based screening for the ceftriaxone-resistant Neisseria gonorrhoeae F89 strain. Eurosurveillance, 18 (14), 18-23. doi: 10.2807/1560-7917.ES2013.18.14.20444

Polymerase chain reaction-based screening for the ceftriaxone-resistant Neisseria gonorrhoeae F89 strain

2013

Journal Article

Further evidence that the IS481 target is suitable for real-time PCR detection of Bordetella pertussis

Cox, Hannah C., Jacob, Kevin, Whiley, David M., Bletchly, Cheryl, Nimmo, Graeme R., Nissen, Michael D. and Sloots, Theo P. (2013). Further evidence that the IS481 target is suitable for real-time PCR detection of Bordetella pertussis. Pathology, 45 (2), 202-203. doi: 10.1097/PAT.0b013e32835cc2d7

Further evidence that the IS481 target is suitable for real-time PCR detection of Bordetella pertussis

2013

Journal Article

Real-time PCR genotyping of Neisseria gonorrhoeae isolates using 14 informative single nucleotide polymorphisms on gonococcal housekeeping genes

Whiley, David M., Goire, Namraj, Rahimi, Frashta, Lahra, Monica M., Limnios, Athena E., Nissen, Michael D. and Sloots, Theo P. (2013). Real-time PCR genotyping of Neisseria gonorrhoeae isolates using 14 informative single nucleotide polymorphisms on gonococcal housekeeping genes. Journal of Antimicrobial Chemotherapy, 68 (2) dks381, 322-328. doi: 10.1093/jac/dks381

Real-time PCR genotyping of Neisseria gonorrhoeae isolates using 14 informative single nucleotide polymorphisms on gonococcal housekeeping genes

2013

Journal Article

One confirmed and one suspected case of pharyngeal gonorrhoea treatment failure following 500mg ceftriaxone in Sydney, Australia

Read, P.J., Limnios, E.A., McNulty, A., Whiley, D. and Lahra, M.M. (2013). One confirmed and one suspected case of pharyngeal gonorrhoea treatment failure following 500mg ceftriaxone in Sydney, Australia. Sexual Health, 10 (5), 460-462. doi: 10.1071/SH13077

One confirmed and one suspected case of pharyngeal gonorrhoea treatment failure following 500mg ceftriaxone in Sydney, Australia

2013

Journal Article

Direct urine polymerase chain reaction for chlamydia and gonorrhoea: a simple means of bringing high-throughput rapid testing to remote settings?

Rahimi, Frashta, Goire, Namraj, Guy, Rebecca, Kaldor, John M., Ward, James, Nissen, Michael D., Sloots, Theo P. and Whiley, David M. (2013). Direct urine polymerase chain reaction for chlamydia and gonorrhoea: a simple means of bringing high-throughput rapid testing to remote settings?. Sexual Health, 10 (4), 299-304. doi: 10.1071/SH12108

Direct urine polymerase chain reaction for chlamydia and gonorrhoea: a simple means of bringing high-throughput rapid testing to remote settings?

2012

Journal Article

Observational Research in Childhood Infectious Diseases (ORChID): a dynamic birth cohort study

Lambert, Stephen Bernard, Ware, Robert S., Cook, Anne L., Maguire, Frances A., Whiley, David M,, Bialasiewicz, Seweryn, Mackay, Ian M, Wang, David, Sloots, Theo P., Nissen, Michael D. and Grimwood, Keith (2012). Observational Research in Childhood Infectious Diseases (ORChID): a dynamic birth cohort study. BMJ Open, 2 (6) e002134, e002134.1-e002134.7. doi: 10.1136/bmjopen-2012-002134

Observational Research in Childhood Infectious Diseases (ORChID): a dynamic birth cohort study

2012

Journal Article

The ticking time bomb: escalating antibiotic resistance in Neisseria gonorrhoeae is a public health disaster in waiting

Whiley, David M., Goire, Namraj, Lahra, Monica M., Donovan, Basil, Limnios, Athena E., Nissen, Michael D. and Sloots, Theo P. (2012). The ticking time bomb: escalating antibiotic resistance in Neisseria gonorrhoeae is a public health disaster in waiting. Journal of Antimicrobial Chemotherapy, 67 (9) dks188, 2059-2061. doi: 10.1093/jac/dks188

The ticking time bomb: escalating antibiotic resistance in Neisseria gonorrhoeae is a public health disaster in waiting

2012

Journal Article

In vitro activity of ertapenem versus ceftriaxone against Neisseria gonorrhoeae isolates with highly diverse ceftriaxone MIC values and effects of ceftriaxone resistance determinants: Ertapenem for treatment of gonorrhea?

Unemo, Magnus, Golparian, Daniel, Limnios, Athena, Whiley, David, Ohnishi, Makoto, Lahra, Monica M. and Tapsall, John W. (2012). In vitro activity of ertapenem versus ceftriaxone against Neisseria gonorrhoeae isolates with highly diverse ceftriaxone MIC values and effects of ceftriaxone resistance determinants: Ertapenem for treatment of gonorrhea?. Antimicrobial Agents and Chemotherapy, 56 (7), 3603-3609. doi: 10.1128/AAC.00326-12

In vitro activity of ertapenem versus ceftriaxone against Neisseria gonorrhoeae isolates with highly diverse ceftriaxone MIC values and effects of ceftriaxone resistance determinants: Ertapenem for treatment of gonorrhea?

2012

Journal Article

Improved detection of genetic markers of antimicrobial resistance by hybridization probe-based melting curve analysis using primers to mask proximal mutations: Examples include the influenza H275Y substitution

Whiley, David M., Jacob, Kevin, Nakos, Jennifer, Bletchly, Cheryl, Nimmo, Graeme R., Nissen, Michael D. and Sloots, Theo P. (2012). Improved detection of genetic markers of antimicrobial resistance by hybridization probe-based melting curve analysis using primers to mask proximal mutations: Examples include the influenza H275Y substitution. Journal of Antimicrobial Chemotherapy, 67 (6) dks040, 1375-1379. doi: 10.1093/jac/dks040

Improved detection of genetic markers of antimicrobial resistance by hybridization probe-based melting curve analysis using primers to mask proximal mutations: Examples include the influenza H275Y substitution

2012

Journal Article

Enhanced gonococcal antimicrobial surveillance in the era of ceftriaxone resistance: A real-time PCR assay for direct detection of the Neisseria gonorrhoeae H041 strain

Goire, Namraj, Ohnishi, Makoto, Limnios, Athena E., Lahra, Monica M., Lambert, Stephen B., Nimmo, Graeme R., Nissen, Michael D., Sloots, Theo P. and Whiley, David M. (2012). Enhanced gonococcal antimicrobial surveillance in the era of ceftriaxone resistance: A real-time PCR assay for direct detection of the Neisseria gonorrhoeae H041 strain. Journal of Antimicrobial Chemotherapy, 67 (4) dkr549, 902-905. doi: 10.1093/jac/dkr549

Enhanced gonococcal antimicrobial surveillance in the era of ceftriaxone resistance: A real-time PCR assay for direct detection of the Neisseria gonorrhoeae H041 strain

2012

Journal Article

Comparison of DNA extraction methods for microbial community profiling with an application to pediatric bronchoalveolar lavage samples

Willner, Dana, Daly, Joshua, Whiley, David, Grimwood, Keith, Wainwright, Claire E. and Hugenholtz, Philip (2012). Comparison of DNA extraction methods for microbial community profiling with an application to pediatric bronchoalveolar lavage samples. PLoS One, 7 (4) e34605, e34605.1-e34605.12. doi: 10.1371/journal.pone.0034605

Comparison of DNA extraction methods for microbial community profiling with an application to pediatric bronchoalveolar lavage samples

2012

Journal Article

PrimRglo: A multiplexable quantitative real-time polymerase chain reaction system for nucleic acid detection

Lai, Richard, Liang, Fang, Pearson, Darnley, Barnett, Graeme, Whiley, David, Sloots, Theo, Barnard, Ross T. and Corrie, Simon R. (2012). PrimRglo: A multiplexable quantitative real-time polymerase chain reaction system for nucleic acid detection. Analytical Biochemistry, 422 (2), 89-95. doi: 10.1016/j.ab.2011.12.038

PrimRglo: A multiplexable quantitative real-time polymerase chain reaction system for nucleic acid detection

2012

Journal Article

The influence of target population on nonculture-based detection of markers of Neisseria gonorrhoeae antimicrobial resistance

Goire, Namraj, Freeman, Kevin, Lambert, Stephen B., Nimmo, Graeme R., Limnios, Athena E., Lahra, Monica M., Nissen, Michael D., Sloots, Theo P. and Whiley, David M. (2012). The influence of target population on nonculture-based detection of markers of Neisseria gonorrhoeae antimicrobial resistance. Sexual Health, 9 (5), 422-429. doi: 10.1071/SH12026

The influence of target population on nonculture-based detection of markers of Neisseria gonorrhoeae antimicrobial resistance

2011

Journal Article

Comparison of a multiplexed MassARRAY system with real-time allele-specific PCR technology for genotyping of methicillin-resistant Staphylococcus aureus

Syrmis, M. W., Moser, R. J., Whiley, D. M., Vaska, V., Coombs, G. W., Nissen, M. D., Sloots, T. P. and Nimmo, G. R. (2011). Comparison of a multiplexed MassARRAY system with real-time allele-specific PCR technology for genotyping of methicillin-resistant Staphylococcus aureus. Clinical Microbiology and Infection, 17 (12), 1804-1810. doi: 10.1111/j.1469-0691.2011.03521.x

Comparison of a multiplexed MassARRAY system with real-time allele-specific PCR technology for genotyping of methicillin-resistant Staphylococcus aureus

2011

Journal Article

Rapid single-nucleotide polymorphism-based identification of clonal Pseudomonas aeruginosa isolates from patients with cystic fibrosis by the use of real-time PCR and high-resolution melting curve analysis

Anuj, S. N., Whiley, D. M., Kidd, T. J., Ramsay, K. A., Bell, S. C., Syrmis, M. W., Grimwood, K., Wainwright, C. E., Nissen, M. D. and Sloots, T. P. (2011). Rapid single-nucleotide polymorphism-based identification of clonal Pseudomonas aeruginosa isolates from patients with cystic fibrosis by the use of real-time PCR and high-resolution melting curve analysis. Clinical Microbiology and Infection, 17 (9), 1403-1408. doi: 10.1111/j.1469-0691.2010.03439.x

Rapid single-nucleotide polymorphism-based identification of clonal Pseudomonas aeruginosa isolates from patients with cystic fibrosis by the use of real-time PCR and high-resolution melting curve analysis

2011

Journal Article

Viral-bacterial co-infection in Australian Indigenous children with acute otitis media

Binks, Michael J., Cheng, Allen C., Smith-Vaughan, Heidi, Sloots, Theo, Nissen, Michael, Whiley, David, McDonnell, Joseph and Leach, Amanda J. (2011). Viral-bacterial co-infection in Australian Indigenous children with acute otitis media. BMC Infectious Diseases, 11 (161) 161, 1-8. doi: 10.1186/1471-2334-11-161

Viral-bacterial co-infection in Australian Indigenous children with acute otitis media