2013 Journal Article Neisseria gonorrhoeae false-positive result obtained from a pharyngeal swab by using the roche cobas 4800 CT/NG assay in New Zealand in 2012Upton, Arlo, Bromhead, Collette and Whiley, David M. (2013). Neisseria gonorrhoeae false-positive result obtained from a pharyngeal swab by using the roche cobas 4800 CT/NG assay in New Zealand in 2012. Journal of Clinical Microbiology, 51 (5), 1609-1610. doi: 10.1128/JCM.00485-13 |
2013 Journal Article Detection of novel polyomaviruses, TSPyV, HPyV6, HPyV7, HPyV9 and MWPyV in feces, urine, blood, respiratory swabs and cerebrospinal fluidRockett, Rebecca J., Sloots, Theo P., Bowes, Sharleen, O'Neill, Nicholas, Ye, Suifang, Robson, Jenny, Whiley, David M., Lambert, Stephen B., Wang, David, Nissen, Michael D. and Bialasiewicz, Seweryn (2013). Detection of novel polyomaviruses, TSPyV, HPyV6, HPyV7, HPyV9 and MWPyV in feces, urine, blood, respiratory swabs and cerebrospinal fluid. PLoS ONE, 8 (5) e62764, e62764.1-e62764.9. doi: 10.1371/journal.pone.0062764 |
2013 Journal Article High-throughput single-nucleotide polymorphism-based typing of shared Pseudomonas aeruginosa strains in cystic fibrosis patients using the Sequenom iPLEX platformSyrmis, Melanie W., Moser, Ralf J., Kidd, Timothy J., Hunt, Priscilla, Ramsay, Kay A., Bell, Scott C., Wainwright, Claire E., Grimwood, Keith, Nissen, Michael D., Sloots, Theo P. and Whiley, David M. (2013). High-throughput single-nucleotide polymorphism-based typing of shared Pseudomonas aeruginosa strains in cystic fibrosis patients using the Sequenom iPLEX platform. Journal of Medical Microbiology, 62 (5), 734-740. doi: 10.1099/jmm.0.055905-0 |
2013 Journal Article Comparison of the cobas 4800 CT/NG test with culture for detecting neisseria gonorrhoeae in genital and nongenital specimens in a low-prevalence population in New ZealandBromhead, Collette, Miller, Amanda, Jones, Mark and Whiley, David (2013). Comparison of the cobas 4800 CT/NG test with culture for detecting neisseria gonorrhoeae in genital and nongenital specimens in a low-prevalence population in New Zealand. Journal of Clinical Microbiology, 51 (5), 1505-1509. doi: 10.1128/JCM.03223-12 |
2013 Journal Article Polymerase chain reaction-based screening for the ceftriaxone-resistant Neisseria gonorrhoeae F89 strainGoire, N., Lahra, M. M., Ohnishi, M., Hogan, T., Liminios, A. E., Nissen, M. D., Sloots, T. P. and Whiley, D. M. (2013). Polymerase chain reaction-based screening for the ceftriaxone-resistant Neisseria gonorrhoeae F89 strain. Eurosurveillance, 18 (14), 18-23. doi: 10.2807/1560-7917.ES2013.18.14.20444 |
2013 Journal Article Further evidence that the IS481 target is suitable for real-time PCR detection of Bordetella pertussisCox, Hannah C., Jacob, Kevin, Whiley, David M., Bletchly, Cheryl, Nimmo, Graeme R., Nissen, Michael D. and Sloots, Theo P. (2013). Further evidence that the IS481 target is suitable for real-time PCR detection of Bordetella pertussis. Pathology, 45 (2), 202-203. doi: 10.1097/PAT.0b013e32835cc2d7 |
2013 Journal Article Real-time PCR genotyping of Neisseria gonorrhoeae isolates using 14 informative single nucleotide polymorphisms on gonococcal housekeeping genesWhiley, David M., Goire, Namraj, Rahimi, Frashta, Lahra, Monica M., Limnios, Athena E., Nissen, Michael D. and Sloots, Theo P. (2013). Real-time PCR genotyping of Neisseria gonorrhoeae isolates using 14 informative single nucleotide polymorphisms on gonococcal housekeeping genes. Journal of Antimicrobial Chemotherapy, 68 (2) dks381, 322-328. doi: 10.1093/jac/dks381 |
2013 Journal Article One confirmed and one suspected case of pharyngeal gonorrhoea treatment failure following 500mg ceftriaxone in Sydney, AustraliaRead, P.J., Limnios, E.A., McNulty, A., Whiley, D. and Lahra, M.M. (2013). One confirmed and one suspected case of pharyngeal gonorrhoea treatment failure following 500mg ceftriaxone in Sydney, Australia. Sexual Health, 10 (5), 460-462. doi: 10.1071/SH13077 |
2013 Journal Article Direct urine polymerase chain reaction for chlamydia and gonorrhoea: a simple means of bringing high-throughput rapid testing to remote settings?Rahimi, Frashta, Goire, Namraj, Guy, Rebecca, Kaldor, John M., Ward, James, Nissen, Michael D., Sloots, Theo P. and Whiley, David M. (2013). Direct urine polymerase chain reaction for chlamydia and gonorrhoea: a simple means of bringing high-throughput rapid testing to remote settings?. Sexual Health, 10 (4), 299-304. doi: 10.1071/SH12108 |
2012 Journal Article Observational Research in Childhood Infectious Diseases (ORChID): a dynamic birth cohort studyLambert, Stephen Bernard, Ware, Robert S., Cook, Anne L., Maguire, Frances A., Whiley, David M,, Bialasiewicz, Seweryn, Mackay, Ian M, Wang, David, Sloots, Theo P., Nissen, Michael D. and Grimwood, Keith (2012). Observational Research in Childhood Infectious Diseases (ORChID): a dynamic birth cohort study. BMJ Open, 2 (6) e002134, e002134.1-e002134.7. doi: 10.1136/bmjopen-2012-002134 |
2012 Journal Article The ticking time bomb: escalating antibiotic resistance in Neisseria gonorrhoeae is a public health disaster in waitingWhiley, David M., Goire, Namraj, Lahra, Monica M., Donovan, Basil, Limnios, Athena E., Nissen, Michael D. and Sloots, Theo P. (2012). The ticking time bomb: escalating antibiotic resistance in Neisseria gonorrhoeae is a public health disaster in waiting. Journal of Antimicrobial Chemotherapy, 67 (9) dks188, 2059-2061. doi: 10.1093/jac/dks188 |
2012 Journal Article In vitro activity of ertapenem versus ceftriaxone against Neisseria gonorrhoeae isolates with highly diverse ceftriaxone MIC values and effects of ceftriaxone resistance determinants: Ertapenem for treatment of gonorrhea?Unemo, Magnus, Golparian, Daniel, Limnios, Athena, Whiley, David, Ohnishi, Makoto, Lahra, Monica M. and Tapsall, John W. (2012). In vitro activity of ertapenem versus ceftriaxone against Neisseria gonorrhoeae isolates with highly diverse ceftriaxone MIC values and effects of ceftriaxone resistance determinants: Ertapenem for treatment of gonorrhea?. Antimicrobial Agents and Chemotherapy, 56 (7), 3603-3609. doi: 10.1128/AAC.00326-12 |
2012 Journal Article Improved detection of genetic markers of antimicrobial resistance by hybridization probe-based melting curve analysis using primers to mask proximal mutations: Examples include the influenza H275Y substitutionWhiley, David M., Jacob, Kevin, Nakos, Jennifer, Bletchly, Cheryl, Nimmo, Graeme R., Nissen, Michael D. and Sloots, Theo P. (2012). Improved detection of genetic markers of antimicrobial resistance by hybridization probe-based melting curve analysis using primers to mask proximal mutations: Examples include the influenza H275Y substitution. Journal of Antimicrobial Chemotherapy, 67 (6) dks040, 1375-1379. doi: 10.1093/jac/dks040 |
2012 Journal Article Enhanced gonococcal antimicrobial surveillance in the era of ceftriaxone resistance: A real-time PCR assay for direct detection of the Neisseria gonorrhoeae H041 strainGoire, Namraj, Ohnishi, Makoto, Limnios, Athena E., Lahra, Monica M., Lambert, Stephen B., Nimmo, Graeme R., Nissen, Michael D., Sloots, Theo P. and Whiley, David M. (2012). Enhanced gonococcal antimicrobial surveillance in the era of ceftriaxone resistance: A real-time PCR assay for direct detection of the Neisseria gonorrhoeae H041 strain. Journal of Antimicrobial Chemotherapy, 67 (4) dkr549, 902-905. doi: 10.1093/jac/dkr549 |
2012 Journal Article Comparison of DNA extraction methods for microbial community profiling with an application to pediatric bronchoalveolar lavage samplesWillner, Dana, Daly, Joshua, Whiley, David, Grimwood, Keith, Wainwright, Claire E. and Hugenholtz, Philip (2012). Comparison of DNA extraction methods for microbial community profiling with an application to pediatric bronchoalveolar lavage samples. PLoS One, 7 (4) e34605, e34605.1-e34605.12. doi: 10.1371/journal.pone.0034605 |
2012 Journal Article PrimRglo: A multiplexable quantitative real-time polymerase chain reaction system for nucleic acid detectionLai, Richard, Liang, Fang, Pearson, Darnley, Barnett, Graeme, Whiley, David, Sloots, Theo, Barnard, Ross T. and Corrie, Simon R. (2012). PrimRglo: A multiplexable quantitative real-time polymerase chain reaction system for nucleic acid detection. Analytical Biochemistry, 422 (2), 89-95. doi: 10.1016/j.ab.2011.12.038 |
2012 Journal Article The influence of target population on nonculture-based detection of markers of Neisseria gonorrhoeae antimicrobial resistanceGoire, Namraj, Freeman, Kevin, Lambert, Stephen B., Nimmo, Graeme R., Limnios, Athena E., Lahra, Monica M., Nissen, Michael D., Sloots, Theo P. and Whiley, David M. (2012). The influence of target population on nonculture-based detection of markers of Neisseria gonorrhoeae antimicrobial resistance. Sexual Health, 9 (5), 422-429. doi: 10.1071/SH12026 |
2011 Journal Article Comparison of a multiplexed MassARRAY system with real-time allele-specific PCR technology for genotyping of methicillin-resistant Staphylococcus aureusSyrmis, M. W., Moser, R. J., Whiley, D. M., Vaska, V., Coombs, G. W., Nissen, M. D., Sloots, T. P. and Nimmo, G. R. (2011). Comparison of a multiplexed MassARRAY system with real-time allele-specific PCR technology for genotyping of methicillin-resistant Staphylococcus aureus. Clinical Microbiology and Infection, 17 (12), 1804-1810. doi: 10.1111/j.1469-0691.2011.03521.x |
2011 Journal Article Rapid single-nucleotide polymorphism-based identification of clonal Pseudomonas aeruginosa isolates from patients with cystic fibrosis by the use of real-time PCR and high-resolution melting curve analysisAnuj, S. N., Whiley, D. M., Kidd, T. J., Ramsay, K. A., Bell, S. C., Syrmis, M. W., Grimwood, K., Wainwright, C. E., Nissen, M. D. and Sloots, T. P. (2011). Rapid single-nucleotide polymorphism-based identification of clonal Pseudomonas aeruginosa isolates from patients with cystic fibrosis by the use of real-time PCR and high-resolution melting curve analysis. Clinical Microbiology and Infection, 17 (9), 1403-1408. doi: 10.1111/j.1469-0691.2010.03439.x |
2011 Journal Article Viral-bacterial co-infection in Australian Indigenous children with acute otitis mediaBinks, Michael J., Cheng, Allen C., Smith-Vaughan, Heidi, Sloots, Theo, Nissen, Michael, Whiley, David, McDonnell, Joseph and Leach, Amanda J. (2011). Viral-bacterial co-infection in Australian Indigenous children with acute otitis media. BMC Infectious Diseases, 11 (161) 161, 1-8. doi: 10.1186/1471-2334-11-161 |