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2022 Journal Article The prevalence of antimicrobial resistant Neisseria gonorrhoeae in Papua New Guinea: A systematic review and meta-analysisWillie, Barne, Sweeney, Emma L., Badman, Steven G., Chatfield, Mark, Vallely, Andrew J., Kelly-Hanku, Angela and Whiley, David M. (2022). The prevalence of antimicrobial resistant Neisseria gonorrhoeae in Papua New Guinea: A systematic review and meta-analysis. International Journal of Environmental Research and Public Health, 19 (3) 1520, 1520. doi: 10.3390/ijerph19031520 |
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2022 Journal Article Potentially Pathogenic Organisms in Stools and Their Association With Acute Diarrheal Illness in Children Aged <2 YearsMihala, Gabor, Ware, Robert S., Lambert, Stephen B., Bialasiewicz, Seweryn, Whiley, David M., Sarna, Mohinder, Sloots, Theo P., Nissen, Michael D. and Grimwood, Keith (2022). Potentially Pathogenic Organisms in Stools and Their Association With Acute Diarrheal Illness in Children Aged <2 Years. Journal of the Pediatric Infectious Diseases Society, 11 (5), 199-206. doi: 10.1093/jpids/piab130 |
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2022 Journal Article A previously documented Neisseria macacae isolate providing a false-positive result with Roche cobas 4800 CT/NG does not cross-react with the later generation cobas 6800 CT/NG assayPryce, Todd M., Bromhead, Collette and Whiley, David M. (2022). A previously documented Neisseria macacae isolate providing a false-positive result with Roche cobas 4800 CT/NG does not cross-react with the later generation cobas 6800 CT/NG assay. European Journal of Clinical Microbiology and Infectious Diseases, 42 (1), 121-123. doi: 10.1007/s10096-022-04519-z |
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2021 Journal Article Analytical validation of a real-time hydrolysis probe PCR assay for quantifying Plasmodium falciparum parasites in experimentally infected human adultsWang, Claire Y. T., Ballard, Emma L., Pava, Zuleima, Marquart, Louise, Gaydon, Jane, Murphy, Sean C., Whiley, David, O’Rourke, Peter and McCarthy, James S. (2021). Analytical validation of a real-time hydrolysis probe PCR assay for quantifying Plasmodium falciparum parasites in experimentally infected human adults. Malaria Journal, 20 (1) 181, 181. doi: 10.1186/s12936-021-03717-y |
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2021 Journal Article Global phylogeny of Treponema pallidum lineages reveals recent expansion and spread of contemporary syphilisBeale, Mathew A., Marks, Michael, Cole, Michelle J., Lee, Min-Kuang, Pitt, Rachel, Ruis, Christopher, Balla, Eszter, Crucitti, Tania, Ewens, Michael, Fernández-Naval, Candela, Grankvist, Anna, Guiver, Malcolm, Kenyon, Chris R., Khairullin, Rafil, Kularatne, Ranmini, Arando, Maider, Molini, Barbara J., Obukhov, Andrey, Page, Emma E., Petrovay, Fruzsina, Rietmeijer, Cornelis, Rowley, Dominic, Shokoples, Sandy, Smit, Erasmus, Sweeney, Emma L., Taiaroa, George, Vera, Jaime H., Wennerås, Christine, Whiley, David M. ... Thomson, Nicholas R. (2021). Global phylogeny of Treponema pallidum lineages reveals recent expansion and spread of contemporary syphilis. Nature Microbiology, 6 (12), 1549-1560. doi: 10.1038/s41564-021-01000-z |
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2021 Journal Article High prevalence of pulmonary tuberculosis among female sex workers, men who have sex with men, and transgender women in Papua New GuineaWillie, Barne, Hakim, Avi J., Badman, Steven G., Weikum, Damian, Narokobi, Rebecca, Coy, Kelsey, Gabuzzi, Josephine, Pekon, Simon, Gene, Samson, Amos, Angelyn, Kupul, Martha, Hou, Parker, Dala, Nick M., Whiley, David M., Wapling, Johanna, Kaldor, John M., Vallely, Andrew J. and Kelly-Hanku, Angela (2021). High prevalence of pulmonary tuberculosis among female sex workers, men who have sex with men, and transgender women in Papua New Guinea. Tropical Medicine and Health, 49 (1) 4, 4. doi: 10.1186/s41182-020-00293-w |
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2021 Journal Article Scaling up sexually transmissible infections point-of-care testing in remote Aboriginal and Torres Strait Islander communities: healthcare workers’ perceptions of the barriers and facilitatorsLafferty, Lise, Smith, Kirsty, Causer, Louise, Andrewartha, Kelly, Whiley, David, Badman, Steven G., Donovan, Basil, Anderson, Lorraine, Tangey, Annie, Mak, Donna, Maher, Lisa, Shephard, Mark, Guy, Rebecca, on behalf of the TTANGO2 Collaboration, Bastian, Lisa, Ward, James, Kaldor, John, Comerford, Crissy, Bushby, Trish, Moore, Liz, Gunathilake, Manoji, Johnson, David and Gallant, Daniel (2021). Scaling up sexually transmissible infections point-of-care testing in remote Aboriginal and Torres Strait Islander communities: healthcare workers’ perceptions of the barriers and facilitators. Implementation Science Communications, 2 (1) 127, 1. doi: 10.1186/s43058-021-00232-8 |
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2021 Journal Article Modelling response strategies for controlling gonorrhoea outbreaks in men who have sex with men in AustraliaDuan, Qibin, Carmody, Chris, Donovan, Basil, Guy, Rebecca J., Hui, Ben B., Kaldor, John M., Lahra, Monica M., Law, Matthew G., Lewis, David A., Maley, Michael, McGregor, Skye, McNulty, Anna, Selvey, Christine, Templeton, David J., Whiley, David M., Regan, David G. and Wood, James G. (2021). Modelling response strategies for controlling gonorrhoea outbreaks in men who have sex with men in Australia. PLoS Computational Biology, 17 (11) e1009385, 1-17. doi: 10.1371/journal.pcbi.1009385 |
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2021 Journal Article High rate of asymptomatic colonisation with antimicrobial-resistant E. coli in Australian returned travellersFuruya-Kanamori, Luis, Mills, Deborah J., Trembizki, Ella, Robson, Jennifer M., Jennison, Amy V., Whiley, David M. and Lau, Colleen L. (2021). High rate of asymptomatic colonisation with antimicrobial-resistant E. coli in Australian returned travellers. Journal of Travel Medicine, 29 (1) taab141. doi: 10.1093/jtm/taab141 |
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2021 Journal Article Point-of-care testing and treatment of sexually transmitted and genital infections during pregnancy in Papua New Guinea (WANTAIM trial): Protocol for an economic evaluation alongside a cluster-randomised trialBatura, Neha, Saweri, Olga Pm, Vallely, Andrew, Pomat, William, Homer, Caroline, Guy, Rebecca, Luchters, Stanley, Mola, Glen, Vallely, Lisa M, Morgan, Christopher, Kariwiga, Grace, Wand, Handan, Rogerson, Stephen, Tabrizi, Sepehr N, Whiley, David M, Low, Nicola, Peeling, Rosanna W, Siba, Peter M, Riddell, Michaela, Laman, Moses, Bolnga, John, Robinson, Leanne J, Morewaya, Jacob, Badman, Steven, Kelly-Hanku, Angela, Toliman, Pamela J, Peter, Wilfred, Peach, Elizabeth, Garland, Suzanne ... Wiseman, Virginia (2021). Point-of-care testing and treatment of sexually transmitted and genital infections during pregnancy in Papua New Guinea (WANTAIM trial): Protocol for an economic evaluation alongside a cluster-randomised trial. BMJ Open, 11 (8) e046308, 1-8. doi: 10.1136/bmjopen-2020-046308 |
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2021 Journal Article Limited evidence for the role of environmental factors in the unusual peak of influenza in Brisbane during the 2018-2019 Australian summerLu, Jianyun, Yang, Zhicong, Karawita, Anjana C., Bunte, Myrna, Chew, Keng Yih, Pegg, Cassandra, Mackay, Ian, Whiley, David and Short, Kirsty R. (2021). Limited evidence for the role of environmental factors in the unusual peak of influenza in Brisbane during the 2018-2019 Australian summer. The Science of the Total Environment, 776 145967, 145967. doi: 10.1016/j.scitotenv.2021.145967 |
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2021 Journal Article MicroPIPE: validating an end-to-end workflow for high-quality complete bacterial genome constructionMurigneux, Valentine, Roberts, Leah W., Forde, Brian M., Phan, Minh-Duy, Nhu, Nguyen Thi Khanh, Irwin, Adam D., Harris, Patrick N. A., Paterson, David L., Schembri, Mark A., Whiley, David M. and Beatson, Scott A. (2021). MicroPIPE: validating an end-to-end workflow for high-quality complete bacterial genome construction. BMC Genomics, 22 (1) 474, 474. doi: 10.1186/s12864-021-07767-z |
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2021 Journal Article Optimising treatment outcomes for children and adults through rapid genome sequencing of sepsis pathogens. A study protocol for a prospective, multi-centre trial (DIRECT)Irwin, Adam D., Coin, Lachlan J. M., Harris, Patrick N. A., Cotta, Menino Osbert, Bauer, Michelle J., Buckley, Cameron, Balch, Ross, Kruger, Peter, Meyer, Jason, Shekar, Kiran, Brady, Kara, Fourie, Cheryl, Sharp, Natalie, Vlad, Luminita, Whiley, David, Beatson, Scott A., Forde, Brian M., Paterson, David, Clark, Julia, Hajkowicz, Krispin, Raman, Sainath, Bialasiewicz, Seweryn, Lipman, Jeffrey, Schlapbach, Luregn J. and Roberts, Jason A. (2021). Optimising treatment outcomes for children and adults through rapid genome sequencing of sepsis pathogens. A study protocol for a prospective, multi-centre trial (DIRECT). Frontiers in Cellular and Infection Microbiology, 11 667680, 1-8. doi: 10.3389/fcimb.2021.667680 |
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2021 Journal Article Rapid detection of NDM and VIM carbapenemase encoding genes by recombinase polymerase amplification and lateral flow–based detectionAyfan, Abdulrahman K. S., Macdonald, Joanne, Harris, Patrick N. A., Heney, Claire, Paterson, David L., Trembizki, Ella, Wang, Claire Y. T., Whiley, David M., Zowawi, Hosam M. and Irwin, Adam D. (2021). Rapid detection of NDM and VIM carbapenemase encoding genes by recombinase polymerase amplification and lateral flow–based detection. European Journal of Clinical Microbiology & Infectious Diseases, 40 (11), 2447-2453. doi: 10.1007/s10096-021-04267-6 |
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2021 Journal Article Reflex detection of ciprofloxacin resistance in Neisseria gonorrhoeae by use of the SpeeDx ResistancePlus GC assayLee, Darren Y.J., Ashcroft, Melinda M., Chow, Eric P.F., Sait, Michelle, De Petra, Vesna, Tschaepe, Marlene, Lange, Sigrid, Taiaroa, George, Bradshaw, Catriona S., Whiley, David M., Fairley, Christopher K., Howden, Benjamin P., Chen, Marcus Y., Pasricha, Shivani and Williamson, Deborah A. (2021). Reflex detection of ciprofloxacin resistance in Neisseria gonorrhoeae by use of the SpeeDx ResistancePlus GC assay. Journal of Clinical Microbiology, 59 (5) e00089-21. doi: 10.1128/JCM.00089-21 |
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2021 Journal Article Antiseptic mouthwash for gonorrhoea prevention (OMEGA): a randomised, double-blind, parallel-group, multicentre trialChow, Eric P. F., Williamson, Deborah A., Hocking, Jane S., Law, Matthew G., Maddaford, Kate, Bradshaw, Catriona S., McNulty, Anna, Templeton, David J., Moore, Richard, Murray, Gerald L., Danielewski, Jennifer A., Wigan, Rebecca, Chen, Marcus Y., Guy, Rebecca J., Zhang, Lei, Donovan, Basil, Grulich, Andrew E., Kaldor, John M., Whiley, David M., Cornelisse, Vincent J., Howden, Benjamin P., Lewis, David A., Read, Tim R. H. and Fairley, Christopher K. (2021). Antiseptic mouthwash for gonorrhoea prevention (OMEGA): a randomised, double-blind, parallel-group, multicentre trial. The Lancet Infectious Diseases, 21 (5), 647-656. doi: 10.1016/S1473-3099(20)30704-0 |
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2021 Journal Article Rapid macrolide and amikacin resistance testing for Mycobacterium abscessus in people with cystic fibrosisBordin, Amanda, Pandey, Sushil, Coulter, Christopher, Syrmis, Melanie, Pardo, Carolyn, Hackett, Hazel, Bell, Scott C., Wainwright, Claire E., Nimmo, Graeme R., Jennison, Amy V., Clark, Julia E. and Whiley, David M. (2021). Rapid macrolide and amikacin resistance testing for Mycobacterium abscessus in people with cystic fibrosis. Journal of Medical Microbiology, 70 (4) 001349, 1-11. doi: 10.1099/jmm.0.001349 |
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2021 Journal Article A comparison of ThinPrep against four non-volatile transport media for HPV testing at or near the point of careBadman, S. G., Vallely, A. J., Pardo, C., Mhango, L. P., Cornall, A. M., Kaldor, J. K. and Whiley, D. (2021). A comparison of ThinPrep against four non-volatile transport media for HPV testing at or near the point of care. Pathology, 53 (2), 264-266. doi: 10.1016/j.pathol.2020.10.006 |
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2021 Journal Article Exploring the implications for coincidental treatment of Mycoplasma genitalium infection in Neisseria gonorrhoeae-positive patientsMhango, Lebogang P., Trembizki, Ella, Thng, Caroline, Whiley, David M. and Sweeney, Emma L. (2021). Exploring the implications for coincidental treatment of Mycoplasma genitalium infection in Neisseria gonorrhoeae-positive patients. JAC - Antimicrobial Resistance, 3 (1) dlab033, dlab033. doi: 10.1093/jacamr/dlab033 |
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2021 Journal Article Mycoplasma genitalium infections can comprise a mixture of both fluoroquinolone-susceptible and fluoroquinolone-resistant strainsSweeney, Emma L., Lowry, Kym, Bletchly, Cheryl, Nimmo, Graeme R. and Whiley, David M. (2021). Mycoplasma genitalium infections can comprise a mixture of both fluoroquinolone-susceptible and fluoroquinolone-resistant strains. Journal of Antimicrobial Chemotherapy, 76 (4), 887-892. doi: 10.1093/jac/dkaa542 |
