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2019 Journal Article Over-diagnosis of rotavirus infection in infants due to detection of vaccine virusWhiley, David M., Ye, Suifang, Tozer, Sarah, Clark, Julia E., Bletchly, Cheryl, Lambert, Stephen B., Grimwood, Keith and Nimmo, Graeme R. (2019). Over-diagnosis of rotavirus infection in infants due to detection of vaccine virus. Clinical Infectious Diseases, 71 (5), 1324-1326. doi: 10.1093/cid/ciz1196 |
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2019 Journal Article Whole-genome sequencing as an improved means of investigating Neisseria gonorrhoeae treatment failuresBuckley, Cameron, Beatson, Scott A., Limnios, Athena, Lahra, Monica M., Whiley, David M. and Forde, Brian M. (2019). Whole-genome sequencing as an improved means of investigating Neisseria gonorrhoeae treatment failures. Sexual Health, 16 (5), 500-507. doi: 10.1071/SH19012 |
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2019 Journal Article Emergence and spread of ciprofloxacin-resistant Neisseria gonorrhoeae in New South Wales, Australia: lessons from historyHanrahan, Jane K., Hogan, Tiffany R., Buckley, Cameron, Trembizki, Ella, Mitchell, Hazel, Lau, Colleen L., Whiley, David M. and Lahra, Monica M. (2019). Emergence and spread of ciprofloxacin-resistant Neisseria gonorrhoeae in New South Wales, Australia: lessons from history. Journal of Antimicrobial Chemotherapy, 74 (8), 2214-2219. doi: 10.1093/jac/dkz182 |
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2019 Journal Article Solithromycin versus ceftriaxone plus azithromycin for the treatment of uncomplicated genital gonorrhoea (SOLITAIRE-U): a randomised phase 3 non-inferiority trialChen, Marcus Y., McNulty, Anna, Avery, Ann, Whiley, David, Tabrizi, Sepehr N., Hardy, Dwight, Das, Anita F., Nenninger, Ashley, Fairley, Christopher K., Hocking, Jane S., Bradshaw, Catriona S., Donovan, Basil, Howden, Benjamin P. and Oldach, David (2019). Solithromycin versus ceftriaxone plus azithromycin for the treatment of uncomplicated genital gonorrhoea (SOLITAIRE-U): a randomised phase 3 non-inferiority trial. The Lancet Infectious Diseases, 19 (8), 833-842. doi: 10.1016/S1473-3099(19)30116-1 |
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2019 Journal Article False-negative Chlamydia polymerase chain reaction result caused by a cryptic plasmid-deficient Chlamydia trachomatis strain in AustraliaSweeney, Emma L., Bletchly, Cheryl, Gupta, Rita and Whiley, David M. (2019). False-negative Chlamydia polymerase chain reaction result caused by a cryptic plasmid-deficient Chlamydia trachomatis strain in Australia. Sexual Health, 16 (4), 394-396. doi: 10.1071/sh18205 |
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2019 Journal Article Evaluation of the SpeeDx Carba (beta) multiplex real-time PCR assay for detection of NDM, KPC, OXA-48-like, IMP-4-like and VIM carbapenemase genesBordin, Amanda, Trembizki, Ella, Windsor, Madeline, Wee, Rachel, Tan, Lit Yeen, Buckley, Cameron, Syrmis, Melanie, Bergh, Haakon, Cottrell, Kyra, Zowawi, Hosam M., Sidjabat, Hanna E, Harris, Patrick N. A., Nimmo, Graeme R., Paterson, David L. and Whiley, David M. (2019). Evaluation of the SpeeDx Carba (beta) multiplex real-time PCR assay for detection of NDM, KPC, OXA-48-like, IMP-4-like and VIM carbapenemase genes. BMC Infectious Diseases, 19 (1) 571, 571. doi: 10.1186/s12879-019-4176-z |
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2019 Journal Article Evaluation of the ResistancePlus GC (beta) assay: A commercial diagnostic test for the direct detection of ciprofloxacin susceptibility or resistance in Neisseria gonorrhoeaeEbeyan, Samantha, Windsor, Madeline, Bordin, Amanda, Mhango, Lebogang, Erskine, Simon, Trembizki, Ella, Mokany, Elisa, Tan, Lit Yeen, Whiley, David and GRAND2 Study Investigators (2019). Evaluation of the ResistancePlus GC (beta) assay: A commercial diagnostic test for the direct detection of ciprofloxacin susceptibility or resistance in Neisseria gonorrhoeae. Journal of Antimicrobial Chemotherapy, 74 (7), 1820-1824. doi: 10.1093/jac/dkz108 |
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2019 Journal Article A diagnostic evaluation of a molecular assay used for testing and treating anorectal chlamydia and gonorrhoea infections at the point-of-care in Papua New GuineaBadman, S. G., Willie, B., Narokobi, R., Gabuzzi, J., Pekon, S., Amos-Kuma, A., Hakim, A. J., Weikum, D., Gare, J., Silim, S., Guy, R. J., Donovan, B., Cunningham, P., Kaldor, J. M., Vallely, A. J., Whiley, D. and Kelly-Hanku, A. (2019). A diagnostic evaluation of a molecular assay used for testing and treating anorectal chlamydia and gonorrhoea infections at the point-of-care in Papua New Guinea. Clinical Microbiology and Infection, 25 (5), 623-627. doi: 10.1016/j.cmi.2018.08.001 |
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2019 Journal Article Systematic review and survey of Neisseria gonorrhoeae ceftriaxone and azithromycin susceptibility data in the Asia Pacific, 2011 to 2016George, C.R. Robert, Enriquez, Rodney P., Gatus, Barrie J., Whiley, David M., Lo, Ying-Ru, Ishikawa, Naoko, Wi, Teodora and Lahra, Monica M. (2019). Systematic review and survey of Neisseria gonorrhoeae ceftriaxone and azithromycin susceptibility data in the Asia Pacific, 2011 to 2016. PLoS ONE, 14 (4) e0213312, e0213312. doi: 10.1371/journal.pone.0213312 |
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2019 Journal Article Illumina sequencing of clinical samples for virus detection in a public health laboratoryHuang, Bixing, Jennsion, Amy, Whiley, David, McMahon, Jamie, Hewitson, Glen, Graham, Rikki, De Jong, Amanda and Warrilow, David (2019). Illumina sequencing of clinical samples for virus detection in a public health laboratory. Scientific Reports, 9 (1) 5409, 5409. doi: 10.1038/s41598-019-41830-w |
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2019 Journal Article Genetic relatedness of ceftriaxone-resistant and high-level azithromycin resistant Neisseria gonorrhoeae cases, United Kingdom and Australia, February to April 2018Jennison, Amy V., Whiley, David, Lahra, Monica M., Supsup, Rikki M. Graham, Cole, Michelle J., Hughes, Gwenda, Fifer, Helen, Andersson, Monique, Edwards, Anne and Eyre, David (2019). Genetic relatedness of ceftriaxone-resistant and high-level azithromycin resistant Neisseria gonorrhoeae cases, United Kingdom and Australia, February to April 2018. Eurosurveillance, 24 (8) 1900118, 15-18. doi: 10.2807/1560-7917.ES.2019.24.8.1900118 |
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2019 Journal Article Correction: Within-host whole genome analysis of an antibiotic resistant Pseudomonas aeruginosa strain sub-type in cystic fibrosis (PLoS One (2017) 12:3 (e0172179) DOI: 10.1371/journal.pone.0172179)Sherrard, Laura J., Tai, Anna S., Wee, Bryan A., Ramsay, Kay A., Kidd, Timothy J., Ben Zakour, Nouri L., Whiley, David M., Beatson, Scott A. and Bell, Scott C. (2019). Correction: Within-host whole genome analysis of an antibiotic resistant Pseudomonas aeruginosa strain sub-type in cystic fibrosis (PLoS One (2017) 12:3 (e0172179) DOI: 10.1371/journal.pone.0172179). PLoS ONE, 14 (1) e0210929. doi: 10.1371/journal.pone.0210929 |
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2019 Journal Article Levels of Mycoplasma genitalium antimicrobial resistance differ by both region and gender in the state of Queensland, Australia: implications for treatment guidelinesSweeney, E. L., Trembizki, E., Bletchly, C., Bradshaw, C. S., Menon, A., Francis, F., Langton-Lockton, J., Nimmo, G. R. and Whiley, D. M. (2019). Levels of Mycoplasma genitalium antimicrobial resistance differ by both region and gender in the state of Queensland, Australia: implications for treatment guidelines. Journal of Clinical Microbiology, 57 (3) e01555-18. doi: 10.1128/jcm.01555-18 |
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2019 Book Chapter Identification and discrimination of Chlamydia trachomatis ocular and urogenital strains and major phylogenetic lineages by CtGEM typing, a double-locus genotyping methodHolt, Deborah C., Andersson, Patiyan, Buckley, Cameron, Whiley, David M. and Giffard, Philip M. (2019). Identification and discrimination of Chlamydia trachomatis ocular and urogenital strains and major phylogenetic lineages by CtGEM typing, a double-locus genotyping method. Chlamydia trachomatis. (pp. 87-122) edited by Amanda Claire Brown. New York, NY, United States: Humana Press. doi: 10.1007/978-1-4939-9694-0_8 |
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2019 Conference Publication Evaluation of reduced pooled urine volume to improve test sensitivity for molecular point-of-care detection of Chlamydia and Gonorrhoea – preliminary resultsBell, Sara Fiona Elisabeth, Badman, S. G., Dean, J. A., Coffey, L., Debattista, J., Redmond, A. M., Howard, C., Lemoire, C., Lemoire, J., Williams, O. D., Gilks, C. F. and Whiley, D. M. (2019). Evaluation of reduced pooled urine volume to improve test sensitivity for molecular point-of-care detection of Chlamydia and Gonorrhoea – preliminary results. 2019 Australasian Sexual Health Conference, Perth, WA Australia, 16-18 September 2019. Herston, QLD Australia: |
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2019 Journal Article Point-of-care testing and treatment of sexually transmitted infections to improve birth outcomes in high-burden, low-income settings: study protocol for a cluster randomized crossover trial (the WANTAIM Trial, Papua New Guinea) [version 1; peer review: 1 approved, 1 approved with reservations]Vallely, Andrew J., Pomat, William S., Homer, Caroline, Guy, Rebecca, Luchters, Stanley, Mola, Glen D. L., Kariwiga, Grace, Vallely, Lisa M., Wiseman, Virginia, Morgan, Chris, Wand, Handan, Rogerson, Stephen J., Tabrizi, Sepehr N., Whiley, David M., Low, Nicola, Peeling, Rosanna, Siba, Peter, Riddell, Michaela, Laman, Moses, Bolnga, John, Robinson, Leanne J., Morewaya, Jacob, Badman, Steven G., Batura, Neha, Kelly-Hanku, Angela, Toliman, Pamela J., Peter, Wilfred, Babona, Delly, Peach, Elizabeth ... Kaldor, John M. (2019). Point-of-care testing and treatment of sexually transmitted infections to improve birth outcomes in high-burden, low-income settings: study protocol for a cluster randomized crossover trial (the WANTAIM Trial, Papua New Guinea) [version 1; peer review: 1 approved, 1 approved with reservations]. Wellcome Open Research, 4 53, 53. doi: 10.12688/wellcomeopenres.15173.1 |
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2018 Journal Article Treatment for pharyngeal gonorrhoea under threatRegan, David G., Hui, Ben B., Wood, James G., Fifer, Helen, Lahra, Monica M. and Whiley, David M. (2018). Treatment for pharyngeal gonorrhoea under threat. Lancet Infectious Diseases, 18 (11), 1175-1177. doi: 10.1016/S1473-3099(18)30610-8 |
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2018 Journal Article Discovery of mcr-1-mediated colistin resistance in a highly virulent Escherichia coli lineageForde, Brian M., Zowawi, Hosam M., Harris, Patrick N. A., Roberts, Leah, Ibrahim, Emad, Shaikh, Nissar, Deshmukh, Anand, Sid Ahmed, Mazen A., Al Maslamani, Muna, Cottrell, Kyra, Trembizki, Ella, Sundac, Lana, Yu, Heidi H., Li, Jian, Schembri, Mark A., Whiley, David M., Paterson, David L. and Beatson, Scott A. (2018). Discovery of mcr-1-mediated colistin resistance in a highly virulent Escherichia coli lineage. mSphere, 3 (5) e00486-18. doi: 10.1128/msphere.00486-18 |
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2018 Journal Article Molecular point-of-care testing for chlamydia and gonorrhoea in Indigenous Australians attending remote primary health services (TTANGO): a cluster-randomised, controlled, crossover trialGuy, Rebecca J., Ward, James, Causer, Louise M., Natoli, Lisa, Badman, Steven G., Tangey, Annie, Hengel, Belinda, Wand, Handan, Whiley, David, Tabrizi, Sepehr N., Shephard, Mark, Fairley, Christopher K., Donovan, Basil, Anderson, David A., Regan, David G., Maher, Lisa and Kaldor, John M. (2018). Molecular point-of-care testing for chlamydia and gonorrhoea in Indigenous Australians attending remote primary health services (TTANGO): a cluster-randomised, controlled, crossover trial. The Lancet Infectious Diseases, 18 (10), 1117-1126. doi: 10.1016/S1473-3099(18)30429-8 |
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2018 Journal Article Whole genome sequencing reveals the emergence of a Pseudomonas aeruginosa shared strain sub-lineage among patients treated within a single cystic fibrosis centreWee, Bryan A., Tai, Anna S., Sherrard, Laura J., Ben Zakour, Nouri L., Hanks, Kirt R., Kidd, Timothy J., Ramsay, Kay A., Lamont, Iain, Whiley, David M., Bell, Scott C. and Beatson, Scott A. (2018). Whole genome sequencing reveals the emergence of a Pseudomonas aeruginosa shared strain sub-lineage among patients treated within a single cystic fibrosis centre. BMC Genomics, 19 (1) 644, 644. doi: 10.1186/s12864-018-5018-x |
