Overview
Background
Dr Moni holds a PhD in Artificial Intelligence & Data Science in 2014 from the University of Cambridge, UK followed by postdoctoral training at the University of New South Wales, University of Sydney Vice-chancellor fellowship, and Senior Data Scientist at the University of Oxford. Dr Moni then joined UQ in 2021. He also worked as an assistant professor and lecturer in two universities (PUST and JKKNIU) from 2007 to 2011. He is an Artificial Intelligence, Computer Vision & Machine learning, Digital Health Data Science, Health Informatics and Bioinformatics researcher developing interpretable and clinical applicable machine learning and deep learning models to increase the performance and transparency of AI-based automated decision-making systems.
His research interests include quantifying and extracting actionable knowledge from data to solve real-world problems and giving humans explainable AI models through feature visualisation and attribution methods. He has applied these techniques to various multi-disciplinary applications such as medical imaging including stroke MRI/fMRI imaging, real-time cancer imaging. He led and managed significant research programs in developing machine-learning, deep-learning and translational data science models, and software tools to aid the diagnosis and prediction of disease outcomes, particularly for hard-to-manage complex and chronic diseases. His research interest also includes developing Data Science, machine learning and deep learning algorithms, models and software tools utilising different types of data, especially medical images, neuroimaging (MRI, fMRI, Ultrasound, X-Ray), EEG, ECG, Bioinformatics, and secondary usage of routinely collected data.
- I am currently recruiting graduate students. Check out Available Projects for details. Open to both Domestic and International students.
Availability
- Dr Mohammad Ali Moni is:
- Available for supervision
Fields of research
Qualifications
- Doctor of Philosophy, University of Cambridge
Research interests
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Artificial Intelligence, Computer Vision, Machine Learning, Deep-Learning
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Medical Imaging, Medical Image Analysis, Neuro Imaging
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Digital Health, Data Science, Health Informatics, Clinical Informatics
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Data Mining, Text Mining, Natural Language Processing
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Bioinformatics, Systems Biology, Computational Biology
Research impacts
During the last 5 years he has puvblished over 200 journal articles in many top tier journals including The Lancet, Jama Oncology. The impact of his research is evidenced by the high number of citations to his work (>12000 citations, i10-index 157 and an h-index of 50 according to Google Scholar), received $1.89 M as CI-A (8.9 M total) and awards including :
- Best Impact Award in International Conference on Applied Intelligence and Informatics, UK July 30-31, 2021
- University of Wollongong Engineering & information science Distinguished Early Career Fellowship.2019-2020
- Certara-Monash Fellowship Awarded ($2,00,000), Certara Australia Pty. Ltd, 2019
- Seed funding from two companies Karte Ltd (Japan) and iHealthOmics Ltd (Hong Kong) to develop AI-based health-care related software products. Received seed funding ($40,000) from Karte Ltd. 2018-2020
- USyd DVC Research Fellowship ($50,000), University of Sydney2017-2020
- The Ridley Ken Davies Award ($50,000)-- utilising the research data obtained through Dubbo Osteoporosis Epidemiological Study, Ridley Corporation, Australia 2016
- Travel award to attend ANZBMS Conference, Australia, 2016
- Best student paper award in international conference- IDBSS2014, UK2014
- Travel award to attend NIMBioS Modeling, University of Tennessee, USA. 2013
- The Cambridge Commonwealth, European & International Trust award, The Commonwealth Trust, UK 2011
Works
Search Professor Mohammad Ali Moni’s works on UQ eSpace
2022
Journal Article
SCMTHP: a new approach for identifying and characterizing of tumor-homing peptides using estimated propensity scores of amino acids
Charoenkwan, Phasit, Chiangjong, Wararat, Nantasenamat, Chanin, Moni, Mohammad Ali, Lio’, Pietro, Manavalan, Balachandran and Shoombuatong, Watshara (2022). SCMTHP: a new approach for identifying and characterizing of tumor-homing peptides using estimated propensity scores of amino acids. Pharmaceutics, 14 (1) 122, 122. doi: 10.3390/pharmaceutics14010122
2022
Journal Article
Identification of potential key genes and molecular mechanisms of medulloblastoma based on integrated bioinformatics approach
Islam, Md. Rakibul, Abdulrazak, Lway Faisal, Alam, Mohammad Khursheed, Paul, Bikash Kumar, Ahmed, Kawsar, Bui, Francis M. and Moni, Mohammad Ali (2022). Identification of potential key genes and molecular mechanisms of medulloblastoma based on integrated bioinformatics approach. BioMed Research International, 2022 (1) 1776082, 1-17. doi: 10.1155/2022/1776082
2022
Journal Article
Empirical comparison and analysis of machine learning-based predictors for predicting and analyzing of thermophilic proteins
Charoenkwan, Phasit, Schaduangrat, Nalini, Hasan, Md Mehedi, Moni, Mohammad Ali, Lió, Pietro and Shoombuatong, Watshara (2022). Empirical comparison and analysis of machine learning-based predictors for predicting and analyzing of thermophilic proteins. EXCLI Journal, 21, 554-570. doi: 10.17179/excli2022-4723
2022
Conference Publication
SATLabel: a framework for sentiment and aspect terms based automatic topic labelling
Shahriar, Khandaker Tayef, Moni, Mohammad Ali, Hoque, Mohammed Moshiul, Islam, Muhammad Nazrul and Sarker, Iqbal H. (2022). SATLabel: a framework for sentiment and aspect terms based automatic topic labelling. Machine Intelligence and Data Science Applications, Cumilla, Bangladesh, 26-27 December 2021. Gateway East, Singapore: Springer Nature Singapore. doi: 10.1007/978-981-19-2347-0_6
2022
Journal Article
Deep CNN-LSTM with self-attention model for human activity recognition using wearable sensor
Khatun, Mst. Alema, Yousuf, Mohammad Abu, Ahmed, Sabbir, Uddin, Md. Zia, Alyami, Salem A., Al-Ashhab, Samer, Akhdar, Hanan F., Khan, Asaduzzaman, Azad, Akm and Moni, Mohammad Ali (2022). Deep CNN-LSTM with self-attention model for human activity recognition using wearable sensor. IEEE Journal of Translational Engineering in Health and Medicine, 10 2700316, 1-16. doi: 10.1109/jtehm.2022.3177710
2022
Journal Article
Severity of COVID-19 patients with coexistence of asthma and vitamin D deficiency
Islam, M. Babul, Chowdhury, Utpala Nanda, Nashiry, Md. Asif and Moni, Mohammad Ali (2022). Severity of COVID-19 patients with coexistence of asthma and vitamin D deficiency. Informatics in Medicine Unlocked, 34 101116, 101116. doi: 10.1016/j.imu.2022.101116
2022
Journal Article
Exploring the influencing factors for infant mortality: a mixed-method study of 24 developing countries based on demographic and health survey data
Islam, Md. Akhtarul, Tabassum, Tarana and Moni, Mohammad Ali (2022). Exploring the influencing factors for infant mortality: a mixed-method study of 24 developing countries based on demographic and health survey data. Family Medicine and Primary Care Review, 24 (3), 227-236. doi: 10.5114/fmpcr.2022.118281
2022
Journal Article
Identification of molecular signatures and pathways common to blood cells and brain tissue based RNA-Seq datasets of bipolar disorder: Insights from comprehensive bioinformatics approach
Islam, A.M. Humyra, Rahman, Md Habibur, Bristy, Sadia Afrin, Andalib, K.M. Salim, Khan, Umama, Awal, Md Abdul, Hossain, Md Shahadat and Moni, Mohammad Ali (2022). Identification of molecular signatures and pathways common to blood cells and brain tissue based RNA-Seq datasets of bipolar disorder: Insights from comprehensive bioinformatics approach. Informatics in Medicine Unlocked, 29 100881, 1-12. doi: 10.1016/j.imu.2022.100881
2022
Conference Publication
Early stage detection of heart failure using machine learning techniques
Alom, Zulfikar, Azim, Mohammad Abdul, Aung, Zeyar, Khushi, Matloob, Car, Josip and Moni, Mohammad Ali (2022). Early stage detection of heart failure using machine learning techniques. International Conference on Big Data, IoT, and Machine Learning, Cox’s Bazar, Bangladesh, 23-25 September 2021. Singapore, Singapore: Springer Nature Singapore. doi: 10.1007/978-981-16-6636-0_7
2022
Journal Article
An in silico approach towards identification of novel drug targets in Klebsiella oxytoca
Hafsa, Umme, Chuwdhury, G. S., Hasan, Md Kamrul, Ahsan, Tanveer and Moni, Mohammad Ali (2022). An in silico approach towards identification of novel drug targets in Klebsiella oxytoca. Informatics in Medicine Unlocked, 31 100998, 1-10. doi: 10.1016/j.imu.2022.100998
2022
Journal Article
Systems Biology and Bioinformatics approach to Identify blood based signatures molecules and drug targets of patient with COVID-19
Hasan, Md. Imran, Rahman, Md Habibur, Islam, M. Babul, Islam, Md Zahidul, Hossain, Md Arju and Moni, Mohammad Ali (2022). Systems Biology and Bioinformatics approach to Identify blood based signatures molecules and drug targets of patient with COVID-19. Informatics in Medicine Unlocked, 28 100840. doi: 10.1016/j.imu.2021.100840
2022
Conference Publication
Towards explainable and privacy-preserving artificial intelligence for personalisation in autism spectrum disorder
Mahmud, Mufti, Kaiser, M. Shamim, Rahman, Muhammad Arifur, Wadhera, Tanu, Brown, David J., Shopland, Nicholas, Burton, Andrew, Hughes-Roberts, Thomas, Mamun, Shamim Al, Ieracitano, Cosimo, Tania, Marzia Hoque, Moni, Mohammad Ali, Islam, Mohammed Shariful, Ray, Kanad and Hossain, M. Shahadat (2022). Towards explainable and privacy-preserving artificial intelligence for personalisation in autism spectrum disorder. 16th International Conference, UAHCI 2022, Held as Part of the 24th HCI International Conference, HCII 2022, Virtual, 26 June - 1 July 2022. Cham, Switzerland: Springer International Publishing. doi: 10.1007/978-3-031-05039-8_26
2022
Journal Article
In silico molecular docking and ADME/T analysis of Quercetin compound with its evaluation of broad-spectrum therapeutic potential against particular diseases
Hasan, Md Mahmudul, Khan, Zidan, Chowdhury, Mohammed Salahuddin, Khan, Md Arif, Moni, Mohammad Ali and Rahman, Md Habibur (2022). In silico molecular docking and ADME/T analysis of Quercetin compound with its evaluation of broad-spectrum therapeutic potential against particular diseases. Informatics in Medicine Unlocked, 29 100894, 1-8. doi: 10.1016/j.imu.2022.100894
2022
Journal Article
Identifying molecular signatures and pathways shared between Alzheimer's and Huntington's disorders: a bioinformatics and systems biology approach
Mahbub, Nosin Ibna, Hasan, Md. Imran, Rahman, Md Habibur, Naznin, Feroza, Islam, Md Zahidul and Moni, Mohammad Ali (2022). Identifying molecular signatures and pathways shared between Alzheimer's and Huntington's disorders: a bioinformatics and systems biology approach. Informatics in Medicine Unlocked, 30 100888, 1-12. doi: 10.1016/j.imu.2022.100888
2022
Conference Publication
Machine learning approaches to identify significant features for the diagnosis and prognosis of chronic kidney disease
Mahbub, Nosin Ibna, Hasan, Md. Imran, Ahamad, Md. Martuza, Aktar, Sakifa and Moni, Mohammad Ali (2022). Machine learning approaches to identify significant features for the diagnosis and prognosis of chronic kidney disease. International Conference on Innovations in Science, Engineering and Technology (ICISET), Chittagong, Bangladesh, 26-27 February 2022. Piscataway, NJ, United States: Institute of Electrical and Electronics Engineers. doi: 10.1109/ICISET54810.2022.9775827
2022
Journal Article
Particle swarm optimized fuzzy CNN with quantitative feature fusion for ultrasound image quality identification
Hossain, Muhammad Minoar, Hasan, Md. Mahmodul, Rahim, Md Abdur, Rahman, Mohammad Motiur, Yousuf, Mohammad Abu, Al-Ashhab, Samer, Akhdar, Hanan F., Alyami, Salem A., Azad, AKM and Moni, Mohammad Ali (2022). Particle swarm optimized fuzzy CNN with quantitative feature fusion for ultrasound image quality identification. IEEE Journal of Translational Engineering in Health and Medicine, 10 1800712, 1-13. doi: 10.1109/jtehm.2022.3197923
2021
Journal Article
Cancer incidence, mortality, years of life lost, years lived with disability, and disability-adjusted life years for 29 cancer groups from 2010 to 2019: A systematic analysis for the Global Burden of Disease Study 2019
Kocarnik, Jonathan M., Compton, Kelly, Dean, Frances E., Fu, Weijia, Gaw, Brian L., Harvey, James D., Henrikson, Hannah Jacqueline, Lu, Dan, Pennini, Alyssa, Xu, Rixing, Ababneh, Emad, Abbasi-Kangevari, Mohsen, Abbastabar, Hedayat, Abd-Elsalam, Sherief M., Abdoli, Amir, Abedi, Aidin, Abidi, Hassan, Abolhassani, Hassan, Adedeji, Isaac Akinkunmi, Adnani, Qorinah Estiningtyas Sakilah, Advani, Shailesh M., Afzal, Muhammad Sohail, Aghaali, Mohammad, Ahinkorah, Bright Opoku, Ahmad, Sajjad, Ahmad, Tauseef, Ahmadi, Ali, Ahmadi, Sepideh, Ahmed Rashid, Tarik ... Global Burden of Disease 2019 Cancer Collaboration (2021). Cancer incidence, mortality, years of life lost, years lived with disability, and disability-adjusted life years for 29 cancer groups from 2010 to 2019: A systematic analysis for the Global Burden of Disease Study 2019. JAMA Oncology, 8 (3), 420-444. doi: 10.1001/jamaoncol.2021.6987
2021
Journal Article
StackDPPIV: A novel computational approach for accurate prediction of dipeptidyl peptidase IV (DPP-IV) inhibitory peptides
Charoenkwan, Phasit, Nantasenamat, Chanin, Hasan, Md Mehedi, Moni, Mohammad Ali, Lio', Pietro, Manavalan, Balachandran and Shoombuatong, Watshara (2021). StackDPPIV: A novel computational approach for accurate prediction of dipeptidyl peptidase IV (DPP-IV) inhibitory peptides. Methods, 204, 189-198. doi: 10.1016/j.ymeth.2021.12.001
2021
Journal Article
Umpred-frl: a new approach for accurate prediction of umami peptides using feature representation learning
Charoenkwan, Phasit, Nantasenamat, Chanin, Hasan, Md Mehedi, Moni, Mohammad Ali, Manavalan, Balachandran and Shoombuatong, Watshara (2021). Umpred-frl: a new approach for accurate prediction of umami peptides using feature representation learning. International Journal of Molecular Sciences, 22 (23) 13124, 13124. doi: 10.3390/ijms222313124
2021
Journal Article
The global burden of adolescent and young adult cancer in 2019: a systematic analysis for the Global Burden of Disease Study 2019
GBD 2019 Adolescent Young Adult Cancer Collaborators, Wubishet, Befikadu Legesse and Moni, Mohammad Ali (2021). The global burden of adolescent and young adult cancer in 2019: a systematic analysis for the Global Burden of Disease Study 2019. The Lancet. Oncology, 23 (1), 27-52. doi: 10.1016/S1470-2045(21)00581-7
Supervision
Availability
- Dr Mohammad Ali Moni is:
- Available for supervision
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Available projects
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Deep learning models development and application to the Neuro Imaging (MRI and fMRI)
Magnetic resonance (MR) imaging has become an important non-invasive radiological modality for various clinical applications, such as stoke and cancer. Extracting meaningful clinical information without human interaction is a challenging task. Developing such automatic methods are important in order to reduce human errors and the time taken by clinicians.
In this project, the student will develop novel deep learning algorithms to solve segmentation and detection problems from imaging that could possibly be deployed to MRI & fMRI scanners and may eventually used for diagnostic purposes. The project will involve applying computer vision and deep learning techniques to MR image processing and analysis.
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Deep Leaning Model to identify Neuroimaging biomarkers
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Deep Learning models to solve inverse problems utiling MRI/fMRI image
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AI-based based model development for Magnetic Resonance Imaging
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AI-based Model development for ECG/EEG study
Supervision history
Current supervision
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Doctor Philosophy
Wearable devices and AI Models for Monitoring, Predicting and Assessment Post-stroke Recovery
Principal Advisor
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Doctor Philosophy
Developing AI-based Discission Support System utilising multimodal data
Principal Advisor
Other advisors: Associate Professor Asaduzzaman Khan
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Doctor Philosophy
Understanding the pathophysiology of stroke using bioinformatics and statistical genetics approaches
Principal Advisor
Other advisors: Associate Professor Asaduzzaman Khan, Dr Jian Zeng
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Doctor Philosophy
Understanding the pathophysiology of stroke using bioinformatics and statistical genetics
Principal Advisor
Other advisors: Associate Professor Asaduzzaman Khan, Dr Jian Zeng
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Doctor Philosophy
Robust and Explainable AI to Solve Clinical Problems
Principal Advisor
Other advisors: Associate Professor Asaduzzaman Khan
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Master Philosophy
Advancing Maternal-Fetal Health in Underserved Communities: A Computer Vision Approach
Principal Advisor
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Doctor Philosophy
Coloured noise estimation using electroencephalogram data and deep-learning method for improvement of cognitive function
Principal Advisor
Other advisors: Associate Professor Asaduzzaman Khan
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Doctor Philosophy
Understanding the pathophysiology of stroke using bioinformatics and statistical genetics
Principal Advisor
Other advisors: Associate Professor Asaduzzaman Khan, Dr Jian Zeng
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Doctor Philosophy
Managing non-communicable diseases (NCDs) to achieve Universal Health Coverage (UHC) in South Asia: A case study from Bangladesh
Associate Advisor
Other advisors: Associate Professor Asaduzzaman Khan
Media
Enquiries
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