Dr Mohammad Ali Moni
Dr

Mohammad Ali Moni

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Background

Dr Moni holds a PhD in Artificial Intelligence & Data Science in 2014 from the University of Cambridge, UK followed by postdoctoral training at the University of New South Wales, University of Sydney Vice-chancellor fellowship, and Senior Data Scientist at the University of Oxford. Dr Moni then joined UQ in 2021. He also worked as an assistant professor and lecturer in two universities (PUST and JKKNIU) from 2007 to 2011. He is an Artificial Intelligence, Computer Vision & Machine learning, Digital Health Data Science, Health Informatics and Bioinformatics researcher developing interpretable and clinical applicable machine learning and deep learning models to increase the performance and transparency of AI-based automated decision-making systems.

His research interests include quantifying and extracting actionable knowledge from data to solve real-world problems and giving humans explainable AI models through feature visualisation and attribution methods. He has applied these techniques to various multi-disciplinary applications such as medical imaging including stroke MRI/fMRI imaging, real-time cancer imaging. He led and managed significant research programs in developing machine-learning, deep-learning and translational data science models, and software tools to aid the diagnosis and prediction of disease outcomes, particularly for hard-to-manage complex and chronic diseases. His research interest also includes developing Data Science, machine learning and deep learning algorithms, models and software tools utilising different types of data, especially medical images, neuroimaging (MRI, fMRI, Ultrasound, X-Ray), EEG, ECG, Bioinformatics, and secondary usage of routinely collected data.

  • I am currently recruiting graduate students. Check out Available Projects for details. Open to both Domestic and International students.

Availability

Dr Mohammad Ali Moni is:
Available for supervision

Fields of research

Applications in life sciences Applied computing Artificial intelligence Biological Sciences Biomedical and Clinical Sciences Biomedical engineering Cardiovascular medicine and haematology Clinical sciences Cognitive and computational psychology Computer vision and multimedia computation Cybersecurity and privacy Data management and data science Distributed computing and systems software Engineering Health Sciences Human-centred computing Information and Computing Sciences Informetrics Library and information studies Machine learning Medical biotechnology Mobile computing Nanotechnology Neurosciences Other engineering Psychology Sports science and exercise

Qualifications

  • Doctor of Philosophy, University of Cambridge

Research interests

  • Artificial Intelligence, Computer Vision, Machine Learning, Deep-Learning

  • Medical Imaging, Medical Image Analysis, Neuro Imaging

  • Digital Health, Data Science, Health Informatics, Clinical Informatics

  • Data Mining, Text Mining, Natural Language Processing

  • Bioinformatics, Systems Biology, Computational Biology

Research impacts

During the last 5 years he has puvblished over 200 journal articles in many top tier journals including The Lancet, Jama Oncology. The impact of his research is evidenced by the high number of citations to his work (>12000 citations, i10-index 157 and an h-index of 50 according to Google Scholar), received $1.89 M as CI-A (8.9 M total) and awards including :

  • Best Impact Award in International Conference on Applied Intelligence and Informatics, UK July 30-31, 2021
  • University of Wollongong Engineering & information science Distinguished Early Career Fellowship.2019-2020
  • Certara-Monash Fellowship Awarded ($2,00,000), Certara Australia Pty. Ltd, 2019
  • Seed funding from two companies Karte Ltd (Japan) and iHealthOmics Ltd (Hong Kong) to develop AI-based health-care related software products. Received seed funding ($40,000) from Karte Ltd. 2018-2020
  • USyd DVC Research Fellowship ($50,000), University of Sydney2017-2020
  • The Ridley Ken Davies Award ($50,000)-- utilising the research data obtained through Dubbo Osteoporosis Epidemiological Study, Ridley Corporation, Australia 2016
  • Travel award to attend ANZBMS Conference, Australia, 2016
  • Best student paper award in international conference- IDBSS2014, UK2014
  • Travel award to attend NIMBioS Modeling, University of Tennessee, USA. 2013
  • The Cambridge Commonwealth, European & International Trust award, The Commonwealth Trust, UK 2011

Search Professor Mohammad Ali Moni’s works on UQ eSpace

367 works between 2012 and 2025
All (367) Journal Article (317) Book Chapter (4) Conference Publication (44) Book (1) Other Outputs (1)

201 - 220 of 367 works

2021

Journal Article

A deep learning approach using effective preprocessing techniques to detect COVID-19 from chest CT-scan and X-ray images

Ahamed, Khabir Uddin, Islam, Manowarul, Uddin, Ashraf, Akhter, Arnisha, Paul, Bikash Kumar, Yousuf, Mohammad Abu, Uddin, Shahadat, Quinn, Julian M.W. and Moni, Mohammad Ali (2021). A deep learning approach using effective preprocessing techniques to detect COVID-19 from chest CT-scan and X-ray images. Computers in Biology and Medicine, 139 105014, 105014. doi: 10.1016/j.compbiomed.2021.105014

A deep learning approach using effective preprocessing techniques to detect COVID-19 from chest CT-scan and X-ray images

2021

Journal Article

Stem cell therapies and benefaction of somatic cell nuclear transfer cloning in COVID-19 era

Singh, Birbal, Mal, Gorakh, Verma, Vinod, Tiwari, Ruchi, Khan, Muhammad Imran, Mohapatra, Ranjan K., Mitra, Saikat, Alyami, Salem A., Emran, Talha Bin, Dhama, Kuldeep and Moni, Mohammad Ali (2021). Stem cell therapies and benefaction of somatic cell nuclear transfer cloning in COVID-19 era. Stem Cell Research and Therapy, 12 (1) 283, 1-16. doi: 10.1186/s13287-021-02334-5

Stem cell therapies and benefaction of somatic cell nuclear transfer cloning in COVID-19 era

2021

Journal Article

Mapping subnational HIV mortality in six Latin American countries with incomplete vital registration systems

Cork, Michael A., Henry, Nathaniel J., Watson, Stefanie, Croneberger, Andrew J., Baumann, Mathew, Letourneau, Ian D., Yang, Mingyou, Serfes, Audrey L., Abbas, Jaffar, Abbasi, Nooshin, Abbastabar, Hedayat, Abreu, Lucas G., Abu-Gharbieh, Eman, Achappa, Basavaprabhu, Adabi, Maryam, Adal, Tadele G., Adegbosin, Adeyinka E., Adekanmbi, Victor, Adetokunboh, Olatunji O., Agudelo-Botero, Marcela, Ahinkorah, Bright O., Ahmadi, Keivan, Ahmed, Muktar B., Alhassan, Robert K., Alipour, Vahid, Almasi-Hashiani, Amir, Alvis-Guzman, Nelson, Ancuceanu, Robert, Andrei, Tudorel ... Dwyer-Lindgren, Laura (2021). Mapping subnational HIV mortality in six Latin American countries with incomplete vital registration systems. BMC Medicine, 19 (1) 4. doi: 10.1186/s12916-020-01876-4

Mapping subnational HIV mortality in six Latin American countries with incomplete vital registration systems

2021

Journal Article

LungNet: A hybrid deep-CNN model for lung cancer diagnosis using CT and wearable sensor-based medical IoT data

Faruqui, Nuruzzaman, Yousuf, Mohammad Abu, Whaiduzzaman, Md, Azad, A. K.M., Barros, Alistair and Moni, Mohammad Ali (2021). LungNet: A hybrid deep-CNN model for lung cancer diagnosis using CT and wearable sensor-based medical IoT data. Computers in Biology and Medicine, 139 104961, 104961. doi: 10.1016/j.compbiomed.2021.104961

LungNet: A hybrid deep-CNN model for lung cancer diagnosis using CT and wearable sensor-based medical IoT data

2021

Journal Article

Machine learning-based statistical analysis for early stage detection of cervical cancer

Ali, Md Mamun, Ahmed, Kawsar, Bui, Francis M., Paul, Bikash Kumar, Ibrahim, Sobhy M., Quinn, Julian M.W. and Moni, Mohammad Ali (2021). Machine learning-based statistical analysis for early stage detection of cervical cancer. Computers in Biology and Medicine, 139 104985, 104985. doi: 10.1016/j.compbiomed.2021.104985

Machine learning-based statistical analysis for early stage detection of cervical cancer

2021

Journal Article

In silico identification and characterization of AGO, DCL and RDR gene families and their associated regulatory elements in sweet orange (Citrus sinensis L.)

Mosharaf, Md. Parvez, Rahman, Hafizur, Ahsan, Md. Asif, Akond, Zobaer, Ahmed, Fee Faysal, Islam, Md. Mazharul, Moni, Mohammad Ali and Mollah, Md. Nurul Haque (2021). In silico identification and characterization of AGO, DCL and RDR gene families and their associated regulatory elements in sweet orange (Citrus sinensis L.). PLoS One, 15 (12) e0228233. doi: 10.1371/journal.pone.0228233

In silico identification and characterization of AGO, DCL and RDR gene families and their associated regulatory elements in sweet orange (Citrus sinensis L.)

2021

Journal Article

Identification of molecular biomarkers and pathways of NSCLC: insights from a systems biomedicine perspective

Islam, Rakibul, Ahmed, Liton, Paul, Bikash Kumar, Ahmed, Kawsar, Bhuiyan, Touhid and Moni, Mohammad Ali (2021). Identification of molecular biomarkers and pathways of NSCLC: insights from a systems biomedicine perspective. Journal of Genetic Engineering and Biotechnology, 19 (1) 43, 43. doi: 10.1186/s43141-021-00134-1

Identification of molecular biomarkers and pathways of NSCLC: insights from a systems biomedicine perspective

2021

Other Outputs

Bioinformatics approaches to investigate the phytochemicals of Centella asiatica against the main protease of SARS-CoV-2

Khan, Md. Arif, Khan, Md. Abdullah Al Mamun, Rahman, Shahidur, Ahsan, Asif, Sanjana, Jannatul Maowa, Mahmud, Shafi, Mahfuz, A M U B, Sharfaraz, Ashik, Khan, Mobaidul Islam, Emran, Abdullah Al, Ahmed, Firoz and Moni, Mohammad Ali (2021). Bioinformatics approaches to investigate the phytochemicals of Centella asiatica against the main protease of SARS-CoV-2. doi: 10.21203/rs.3.rs-1099054/v1

Bioinformatics approaches to investigate the phytochemicals of Centella asiatica against the main protease of SARS-CoV-2

2021

Journal Article

Bioinformatics and system biology approaches to identify the diseasome and comorbidities complexities of SARS-CoV-2 infection with the digestive tract disorders

Nashiry, Md Asif, Sumi, Shauli Sarmin, Sharif Shohan, Mohammad Umer, Alyami, Salem A., Azad, A. K.M. and Moni, Mohammad Ali (2021). Bioinformatics and system biology approaches to identify the diseasome and comorbidities complexities of SARS-CoV-2 infection with the digestive tract disorders. Briefings in Bioinformatics, 22 (6) bbab126. doi: 10.1093/bib/bbab126

Bioinformatics and system biology approaches to identify the diseasome and comorbidities complexities of SARS-CoV-2 infection with the digestive tract disorders

2021

Journal Article

Integration and interplay of machine learning and bioinformatics approach to identify genetic interaction related to ovarian cancer chemoresistance

Chen, Kexin, Xu, Haoming, Lei, Yiming, Lio, Pietro, Li, Yuan, Guo, Hongyan and Ali Moni, Mohammad (2021). Integration and interplay of machine learning and bioinformatics approach to identify genetic interaction related to ovarian cancer chemoresistance. Briefings in Bioinformatics, 22 (6) bbab100. doi: 10.1093/bib/bbab100

Integration and interplay of machine learning and bioinformatics approach to identify genetic interaction related to ovarian cancer chemoresistance

2021

Journal Article

rMisbeta: A robust missing value imputation approach in transcriptomics and metabolomics data

Shahjaman, Md., Rahman, Md. Rezanur, Islam, Tania, Auwul, Md. Rabiul, Moni, Mohammad Ali and Mollah, Md. Nurul Haque (2021). rMisbeta: A robust missing value imputation approach in transcriptomics and metabolomics data. Computers in Biology and Medicine, 138 104911, 104911. doi: 10.1016/j.compbiomed.2021.104911

rMisbeta: A robust missing value imputation approach in transcriptomics and metabolomics data

2021

Journal Article

Bioinformatics and system biology approaches to identify pathophysiological impact of COVID-19 to the progression and severity of neurological diseases

Rahman, Md Habibur, Rana, Humayan Kabir, Peng, Silong, Kibria, Md Golam, Islam, Md Zahidul, Mahmud, S M Hasan and Moni, Mohammad Ali (2021). Bioinformatics and system biology approaches to identify pathophysiological impact of COVID-19 to the progression and severity of neurological diseases. Computers in Biology and Medicine, 138 104859, 104859. doi: 10.1016/j.compbiomed.2021.104859

Bioinformatics and system biology approaches to identify pathophysiological impact of COVID-19 to the progression and severity of neurological diseases

2021

Journal Article

Effects of Bacille Calmette Guerin (BCG) vaccination during COVID-19 infection

Chowdhury, Utpala Nanda, Faruqe, Md Omar, Mehedy, Md, Ahmad, Shamim, Islam, M. Babul, Shoombuatong, Watshara, Azad, A. K.M. and Moni, Mohammad Ali (2021). Effects of Bacille Calmette Guerin (BCG) vaccination during COVID-19 infection. Computers in Biology and Medicine, 138 104891, 104891. doi: 10.1016/j.compbiomed.2021.104891

Effects of Bacille Calmette Guerin (BCG) vaccination during COVID-19 infection

2021

Journal Article

Development of an in silico multi-epitope vaccine against SARS-COV-2 by précised immune-informatics approaches

Al Zamane, Saad, Nobel, Fahim Alam, Jebin, Ruksana Akter, Amin, Mohammed Badrul, Somadder, Pratul Dipta, Antora, Nusrat Jahan, Hossain, Md Imam, Islam, Mohammod Johirul, Ahmed, Kawsar and Moni, Mohammad Ali (2021). Development of an in silico multi-epitope vaccine against SARS-COV-2 by précised immune-informatics approaches. Informatics in Medicine Unlocked, 27 100781, 1-22. doi: 10.1016/j.imu.2021.100781

Development of an in silico multi-epitope vaccine against SARS-COV-2 by précised immune-informatics approaches

2021

Journal Article

Global, regional, and national mortality among young people aged 10-24 years, 1950-2019: a systematic analysis for the Global Burden of Disease Study 2019

Ward, Joseph L., Azzopardi, Peter S., Francis, Kate Louise, Santelli, John S., Skirbekk, Vegard, Sawyer, Susan M., Kassebaum, Nicholas J., Mokdad, Ali H., Hay, Simon I., Abd-Allah, Foad, Abdoli, Amir, Abdollahi, Mohammad, Abedi, Aidin, Abolhassani, Hassan, Abreu, Lucas Guimaraes, Abrigo, Michael R. M., Abu-Gharbieh, Eman, Abushouk, Abdelrahman I., Adebayo, Oladimeji M., Adekanmbi, Victor, Adham, Davoud, Advani, Shailesh M., Afshari, Khashayar, Agrawal, Anurag, Ahmad, Tauseef, Ahmadi, Keivan, Ahmed, Anwar E., Aji, Budi, Akombi-Inyang, Blessing ... Viner, Russell M. (2021). Global, regional, and national mortality among young people aged 10-24 years, 1950-2019: a systematic analysis for the Global Burden of Disease Study 2019. Lancet, 398 (10311), 1593-1618.

Global, regional, and national mortality among young people aged 10-24 years, 1950-2019: a systematic analysis for the Global Burden of Disease Study 2019

2021

Journal Article

Intelligent type 2 diabetes risk prediction from administrative claim data

Uddin, Shahadat, Imam, Tasadduq, Hossain, Md Ekramul, Gide, Ergun, Sianaki, Omid Ameri, Moni, Mohammad Ali, Mohammed, Ashwaq Amer and Vandana, Vandana (2021). Intelligent type 2 diabetes risk prediction from administrative claim data. Informatics for Health and Social Care, 47 (3), 1-15. doi: 10.1080/17538157.2021.1988957

Intelligent type 2 diabetes risk prediction from administrative claim data

2021

Conference Publication

Improved transfer learning architecture to classify Covid-19 affected chest X-rays using noisy student pre-training

Fahim, Md Asif Iqbal, Naznin, Feroza, Moni, Mohammad Ali and Islam, Md Zahidul (2021). Improved transfer learning architecture to classify Covid-19 affected chest X-rays using noisy student pre-training. 2021 Joint 10th International Conference on Informatics, Electronics & Vision (ICIEV) and 2021 5th International Conference on Imaging, Vision & Pattern Recognition (icIVPR), Kitakyushu, Japan, 16-20 August 2021. Piscataway, NJ, United States: Institute of Electrical and Electronics Engineers. doi: 10.1109/ICIEVICIVPR52578.2021.9564125

Improved transfer learning architecture to classify Covid-19 affected chest X-rays using noisy student pre-training

2021

Journal Article

Tracking development assistance for health and for COVID-19: a review of development assistance, government, out-of-pocket, and other private spending on health for 204 countries and territories, 1990-2050

Global Burden of Disease 2020 Health Financing Collaborator Network, Wubishet, Befikadu and Moni, Mohammad Ali (2021). Tracking development assistance for health and for COVID-19: a review of development assistance, government, out-of-pocket, and other private spending on health for 204 countries and territories, 1990-2050. Lancet, 398 (10308), 1317-1343. doi: 10.1016/S0140-6736(21)01258-7

Tracking development assistance for health and for COVID-19: a review of development assistance, government, out-of-pocket, and other private spending on health for 204 countries and territories, 1990-2050

2021

Journal Article

Global, regional, and national burden of stroke and its risk factors, 1990-2019: A systematic analysis for the Global Burden of Disease Study 2019

Feigin, Valery L., Stark, Benjamin A., Johnson, Catherine Owens, Roth, Gregory A., Bisignano, Catherine, Abady, Gdiom Gebreheat, Abbasifard, Mitra, Abbasi-Kangevari, Mohsen, Abd-Allah, Foad, Abedi, Vida, Abualhasan, Ahmed, Abu-Rmeileh, Niveen M.E., Abushouk, Abdelrahman I., Adebayo, Oladimeji M., Agarwal, Gina, Agasthi, Pradyumna, Ahinkorah, Bright Opoku, Ahmad, Sohail, Ahmadi, Sepideh, Salih, Yusra Ahmed, Aji, Budi, Akbarpour, Samaneh, Akinyemi, Rufus Olusola, Al Hamad, Hanadi, Alahdab, Fares, Alif, Sheikh Mohammad, Alipour, Vahid, Aljunid, Syed Mohamed, Almustanyir, Sami ... Murray, Christopher J.L. (2021). Global, regional, and national burden of stroke and its risk factors, 1990-2019: A systematic analysis for the Global Burden of Disease Study 2019. The Lancet Neurology, 20 (10), 1-26. doi: 10.1016/S1474-4422(21)00252-0

Global, regional, and national burden of stroke and its risk factors, 1990-2019: A systematic analysis for the Global Burden of Disease Study 2019

2021

Journal Article

Global, regional, and national sex-specific burden and control of the HIV epidemic, 1990-2019, for 204 countries and territories: the Global Burden of Diseases Study 2019

GBD 2019 HIV Collaborators, Sinshaw, Aklilu and Moni, Mohammad Ali (2021). Global, regional, and national sex-specific burden and control of the HIV epidemic, 1990-2019, for 204 countries and territories: the Global Burden of Diseases Study 2019. The Lancet HIV, 8 (10), e633-e651. doi: 10.1016/S2352-3018(21)00152-1

Global, regional, and national sex-specific burden and control of the HIV epidemic, 1990-2019, for 204 countries and territories: the Global Burden of Diseases Study 2019

Availability

Dr Mohammad Ali Moni is:
Available for supervision

Before you email them, read our advice on how to contact a supervisor.

Available projects

  • Deep learning models development and application to the Neuro Imaging (MRI and fMRI)

    Magnetic resonance (MR) imaging has become an important non-invasive radiological modality for various clinical applications, such as stoke and cancer. Extracting meaningful clinical information without human interaction is a challenging task. Developing such automatic methods are important in order to reduce human errors and the time taken by clinicians.

    In this project, the student will develop novel deep learning algorithms to solve segmentation and detection problems from imaging that could possibly be deployed to MRI & fMRI scanners and may eventually used for diagnostic purposes. The project will involve applying computer vision and deep learning techniques to MR image processing and analysis.

  • Deep Leaning Model to identify Neuroimaging biomarkers

  • Deep Learning models to solve inverse problems utiling MRI/fMRI image

  • AI-based based model development for Magnetic Resonance Imaging

  • AI-based Model development for ECG/EEG study

Supervision history

Current supervision

  • Doctor Philosophy

    Robust and Explainable AI to Solve Clinical Problems

    Principal Advisor

    Other advisors: Associate Professor Asaduzzaman Khan

  • Master Philosophy

    Advancing Maternal-Fetal Health in Underserved Communities: A Computer Vision Approach

    Principal Advisor

  • Doctor Philosophy

    Coloured noise estimation using electroencephalogram data and deep-learning method for improvement of cognitive function

    Principal Advisor

    Other advisors: Associate Professor Asaduzzaman Khan

  • Doctor Philosophy

    Understanding the pathophysiology of stroke using bioinformatics and statistical genetics

    Principal Advisor

    Other advisors: Associate Professor Asaduzzaman Khan, Dr Jian Zeng

  • Doctor Philosophy

    Wearable devices and AI Models for Monitoring, Predicting and Assessment Post-stroke Recovery

    Principal Advisor

  • Doctor Philosophy

    Developing AI-based Discission Support System utilising multimodal data

    Principal Advisor

    Other advisors: Associate Professor Asaduzzaman Khan

  • Doctor Philosophy

    Understanding the pathophysiology of stroke using bioinformatics and statistical genetics approaches

    Principal Advisor

    Other advisors: Associate Professor Asaduzzaman Khan, Dr Jian Zeng

  • Doctor Philosophy

    Understanding the pathophysiology of stroke using bioinformatics and statistical genetics

    Principal Advisor

    Other advisors: Associate Professor Asaduzzaman Khan, Dr Jian Zeng

  • Doctor Philosophy

    Managing non-communicable diseases (NCDs) to achieve Universal Health Coverage (UHC) in South Asia: A case study from Bangladesh

    Associate Advisor

    Other advisors: Associate Professor Asaduzzaman Khan

Enquiries

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