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2024 Journal Article Determining Pneumocystis jirovecii colonisation from infection using PCR-based diagnostics in HIV-negative individualsWatson, Anna Louise, Woodford, John, Britton, Sumudu, Gupta, Rita, Whiley, David and McCarthy, Kate (2024). Determining Pneumocystis jirovecii colonisation from infection using PCR-based diagnostics in HIV-negative individuals. Diagnostics, 14 (1) 114. doi: 10.3390/diagnostics14010114 |
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2023 Journal Article Maximizing the Neisseria gonorrhoeae confirmatory rate and the genotypic detection of ciprofloxacin resistance for samples screened with cobas CT/NGPryce, Todd M., Foti, Olivia R., Haygarth, Erin J. and Whiley, David M. (2023). Maximizing the Neisseria gonorrhoeae confirmatory rate and the genotypic detection of ciprofloxacin resistance for samples screened with cobas CT/NG. Journal of Clinical Microbiology, 62 (1) e0103923, 1-14. doi: 10.1128/jcm.01039-23 |
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2023 Journal Article Evaluation of Illumina® COVIDSeq™ as a Tool for Omicron SARS-CoV-2 CharacterisationLowry, Kym, Bauer, Michelle J., Buckley, Cameron, Wang, Claire, Bordin, Amanda, Badman, Steven, Harris, Patrick N.A., Mackay, Ian and Whiley, David (2023). Evaluation of Illumina® COVIDSeq™ as a Tool for Omicron SARS-CoV-2 Characterisation. Journal of Virological Methods, 322 114827, 1-5. doi: 10.1016/j.jviromet.2023.114827 |
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2023 Journal Article Rapid inactivation and sample preparation for SARS-CoV-2 PCR-based diagnostics using TNA-Cifer reagent EPollak, Nina, Rawle, Daniel J., Yan, Kexin, Buckley, Cameron, Le, Thuy, Wang, Claire Y., Ertl, Nicole G., Van Huyssteen, Karla, Crkvencic, Nicole, Hashmi, Misha, Lyons, Russell E., Whiley, David M., Suhrbier, Andreas and Macdonald, Joanne (2023). Rapid inactivation and sample preparation for SARS-CoV-2 PCR-based diagnostics using TNA-Cifer reagent E. Frontiers in Microbiology, 14 1238542, 1-12. doi: 10.3389/fmicb.2023.1238542 |
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2023 Journal Article Rapid expansion of Neisseria gonorrhoeae ST7827 clone in Australia, with variable ceftriaxone phenotype unexplained by genotypevan Hal, S. J., Whiley, D. M., Le, T., Ray, S., Kundu, R. L., Kerr, E. and Lahra, M. M. (2023). Rapid expansion of Neisseria gonorrhoeae ST7827 clone in Australia, with variable ceftriaxone phenotype unexplained by genotype. Journal of Antimicrobial Chemotherapy, 78 (9), 2203-2208. doi: 10.1093/jac/dkad221 |
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2023 Journal Article Application of the ViroKey® SQ FLEX assay for detection of cytomegalovirus antiviral resistanceHume, Jocelyn, Lowry, Kym, Whiley, David M., Irwin, Adam D., Bletchly, Cheryl and Sweeney, Emma L. (2023). Application of the ViroKey® SQ FLEX assay for detection of cytomegalovirus antiviral resistance. Journal of Clinical Virology, 167 105556, 1-8. doi: 10.1016/j.jcv.2023.105556 |
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2023 Journal Article gyrA mutations in Mycoplasma genitalium and their contribution to moxifloxacin failure: time for the next generation of resistance-guided therapyMurray, Gerald L, Plummer, Erica L, Bodiyabadu, Kaveesha, Vodstrcil, Lenka A, Huaman, Jose L, Danielewski, Jennifer A, Chua, Teck Phui, Machalek, Dorothy A, Garland, Suzanne, Doyle, Michelle, Sweeney, Emma L, Whiley, David M and Bradshaw, Catriona S (2023). gyrA mutations in Mycoplasma genitalium and their contribution to moxifloxacin failure: time for the next generation of resistance-guided therapy. Clinical Infectious Diseases, 76 (12), 2187-2195. doi: 10.1093/cid/ciad057 |
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2023 Journal Article A universal reagent for detection of emerging diseases using bioengineered multifunctional yeast nanofragmentsLi, Junrong, Howard, Christopher B., Dey, Shuvashis, Lowry, Kym, Whiley, David M., Puttick, Simon, Rose, Stephen, Lobb, Richard J., Wuethrich, Alain, Edwardraja, Selvakumar and Trau, Matt (2023). A universal reagent for detection of emerging diseases using bioengineered multifunctional yeast nanofragments. Nature Nanotechnology, 18 (10), 1222-1229. doi: 10.1038/s41565-023-01415-1 |
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2023 Journal Article Antimicrobial susceptibility assays for Neisseria gonorrhoeae: a proof-of-principle population-based retrospective analysisBell, Sara F. E., Ware, Robert S., Lewis, David A., Lahra, Monica M. and Whiley, David M. (2023). Antimicrobial susceptibility assays for Neisseria gonorrhoeae: a proof-of-principle population-based retrospective analysis. The Lancet Microbe, 4 (7), e544-e551. doi: 10.1016/s2666-5247(23)00071-x |
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2023 Journal Article Selection of Neisseria gonorrhoeae ceftriaxone resistance using doxycycline post-exposure prophylaxisWhiley, David M., Tickner, Jacob A., Kundu, Ratan L., Hogan, Tiffany R., van Hal, Sebastiaan J. and Lahra, Monica M. (2023). Selection of Neisseria gonorrhoeae ceftriaxone resistance using doxycycline post-exposure prophylaxis. The Lancet Infectious Diseases, 23 (8), e268-e269. doi: 10.1016/s1473-3099(23)00359-6 |
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2023 Journal Article Cytomegalovirus in children undergoing haematopoietic stem cell transplantation: a diagnostic and therapeutic approach to antiviral resistanceHume, Jocelyn, Sweeney, Emma L., Lowry, Kym, Fraser, Chris, Clark, Julia E., Whiley, David M. and Irwin, Adam D. (2023). Cytomegalovirus in children undergoing haematopoietic stem cell transplantation: a diagnostic and therapeutic approach to antiviral resistance. Frontiers in Pediatrics, 11 1180392, 1180392. doi: 10.3389/fped.2023.1180392 |
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2023 Journal Article Neisseria gonorrhoeae ciprofloxacin susceptibility testing and gyrA targetsTickner, Jacob A, Trembizki, Ella and Whiley, David M (2023). Neisseria gonorrhoeae ciprofloxacin susceptibility testing and gyrA targets. The Lancet Microbe, 4 (8), e574-E574. doi: 10.1016/s2666-5247(23)00149-0 |
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2023 Journal Article Rapid molecular detection of CMY-2, and CTX-M group 1 and 9 variants via recombinase polymerase amplificationErtl, Nicole G., Irwin, Adam D., Macdonald, Joanne, Bauer, Michelle J., Wang, Claire Y. T., Harris, Patrick N. A., Heney, Claire, Zowawi, Hosam M. and Whiley, David M. (2023). Rapid molecular detection of CMY-2, and CTX-M group 1 and 9 variants via recombinase polymerase amplification. JAC - Antimicrobial Resistance, 5 (2) dlad023, dlad023. doi: 10.1093/jacamr/dlad023 |
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2023 Journal Article Travel-associated lineages and unique endemic antimicrobial-susceptible lineages of Neisseria gonorrhoeae predominate in Western AustraliaAl Suwayyid, Barakat A., Haese, Ethan C., Mowlaboccus, Shakeel, Pearson, Julie C., Whiley, David M., Armstrong, Paul K., Giele, Carolien M., Mak, Donna B., Bastian, Lisa, Wise, Michael J., Coombs, Geoffrey W. and Kahler, Charlene M. (2023). Travel-associated lineages and unique endemic antimicrobial-susceptible lineages of Neisseria gonorrhoeae predominate in Western Australia. Microbial Genomics, 9 (3) 000969. doi: 10.1099/mgen.0.000969 |
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2023 Journal Article The changing epidemiology of Neisseria gonorrhoeae genogroups and antimicrobial resistance in Queensland, Australia, 2010–15: a case series analysis of unique Neisseria gonorrhoeae isolatesMcHugh, Lisa, Dyda, Amalie, Guglielmino, Christine, Buckley, Cameron, Lau, Colleen L., Jennison, Amy V., Regan, David G., Wood, James, Whiley, David and Trembizki, Ella (2023). The changing epidemiology of Neisseria gonorrhoeae genogroups and antimicrobial resistance in Queensland, Australia, 2010–15: a case series analysis of unique Neisseria gonorrhoeae isolates. Sexual Health, 20 (4), 296-302. doi: 10.1071/sh22118 |
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2023 Journal Article Mycoplasma hominis and Ureaplasma urealyticum infections in the immediate post-lung transplant period: A case series and literature reviewDivithotewala, Chandima, Sweeney, Emma L., Burke, Andrew, Graves, Bianca, Stewart, Adam, Whiley, David, Heney, Claire, Hopkins, Peter M. and Chambers, Daniel C. (2023). Mycoplasma hominis and Ureaplasma urealyticum infections in the immediate post-lung transplant period: A case series and literature review. Transplant Infectious Disease, 25 (3) e14058, 1-7. doi: 10.1111/tid.14058 |
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2023 Journal Article Genome-based epidemiology and antimicrobial resistance of Neisseria gonorrhoeae in Spain: a prospective multicentre studySalmerón, P., Buckley, C., Arando, M., Alcoceba, E., Romero, B., Clavo, P., Whiley, D. and Serra-Pladevall, J. (2023). Genome-based epidemiology and antimicrobial resistance of Neisseria gonorrhoeae in Spain: a prospective multicentre study. Journal of the European Academy of Dermatology and Venereology, 37 (12), 2575-2582. doi: 10.1111/jdv.19458 |
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2023 Journal Article Decreased Neisseria gonorrhoeae genotypic diversity following COVID-19 restrictions in Queensland, Australia 2020Alharbi, Bushra, Jennison, Amy V., Hicks, Vicki, Whiley, David M, Sweeney, Emma and Trembizki, Ella (2023). Decreased Neisseria gonorrhoeae genotypic diversity following COVID-19 restrictions in Queensland, Australia 2020. Epidemiology and Infection, 151 e67, 1-8. doi: 10.1017/S0950268823000523 |
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2022 Journal Article Histo-blood group antigens and rotavirus vaccine virus shedding in Australian infantsEl-Heneidy, Asmaa, Cheung, Catherine, Lambert, Stephen B., Wang, Claire Y. T., Whiley, David M., Sly, Peter D., Ware, Robert S. and Grimwood, Keith (2022). Histo-blood group antigens and rotavirus vaccine virus shedding in Australian infants. Pathology, 54 (7), 928-934. doi: 10.1016/j.pathol.2022.04.006 |
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2022 Journal Article Optimized method for bacterial nucleic acid extraction from positive blood culture broth for whole-genome sequencing, resistance phenotype prediction, and downstream molecular applicationsBauer, Michelle J., Peri, Anna Maria, Lüftinger, Lukas, Beisken, Stephan, Bergh, Haakon, Forde, Brian M., Buckley, Cameron, Cuddihy, Thom, Tan, Patrice, Paterson, David L., Whiley, David M. and Harris, Patrick N. A. (2022). Optimized method for bacterial nucleic acid extraction from positive blood culture broth for whole-genome sequencing, resistance phenotype prediction, and downstream molecular applications. Journal of Clinical Microbiology, 60 (11) e01012-22, 1-11. doi: 10.1128/jcm.01012-22 |
