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2018 Journal Article A peripheral blood transcriptomic signature predicts autoantibody development in infants at risk of type 1 diabetesMehdi, Ahmed M., Hamilton-Williams, Emma E., Cristino, Alexandre, Ziegler, Anette, Bonifacio, Ezio, Le Cao, Kim-Anh, Harris, Mark and Thomas, Ranjeny (2018). A peripheral blood transcriptomic signature predicts autoantibody development in infants at risk of type 1 diabetes. JCI Insight, 3 (5) ARTN e98212. doi: 10.1172/jci.insight.98212 |
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2018 Conference Publication Intestinal inflammatory regulation in murine and human spondyloarthropathy requires high-affinity T cell receptor-zeta chain-associated protein (ZAP) 70-mediated runt-related transcription factor (Runx) 3 activityBhuyan, Zaied Ahmed, Rahman, M. Arifur, Maradana, Muralidhara, Mehdi, Ahmed, Guggino, Giuliana, Leo, Paul, Rehaume, Linda, Brown, Matthew, Ciccia, Francesco and Thomas, Ranjeny (2018). Intestinal inflammatory regulation in murine and human spondyloarthropathy requires high-affinity T cell receptor-zeta chain-associated protein (ZAP) 70-mediated runt-related transcription factor (Runx) 3 activity. 2018 ACR/ARHP Annual Meeting, Chicago, Illinois, 19-24 October 2018. Hoboken, NJ, United States: John Wiley & Sons. |
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2017 Journal Article Dexamethasone and monophosphoryl lipid a induce a distinctive profile on monocyte-derived dendritic cells through transcriptional modulation of genes associated with essential processes of the immune responseGarcia-Gonzalez, Paulina A., Schinnerling, Katina, Sepulveda-Gutierrez, Alejandro, Maggi, Jaxaira, Mehdi, Ahmed M., Nel, Hendrik J., Pesce, Barbara, Larrondo, Milton L., Aravena, Octavio, Molina, Mar-A C., Catalan, Diego, Thomas, Ranjeny, Verdugo, Ricardo A. and Aguillon, Juan C. (2017). Dexamethasone and monophosphoryl lipid a induce a distinctive profile on monocyte-derived dendritic cells through transcriptional modulation of genes associated with essential processes of the immune response. Frontiers in Immunology, 8 (OCT) 1350, 1350. doi: 10.3389/fimmu.2017.01350 |
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2017 Journal Article RAZA: A Rapid 3D z-crossings algorithm to segment electron tomograms and extract organelles and macromoleculesAli, Rubbiya A., Mehdi, Ahmed M., Rothnagel, Rosalba, Hamilton, Nicholas A., Gerle, Christoph, Landsberg, Michael J. and Hankamer, Ben (2017). RAZA: A Rapid 3D z-crossings algorithm to segment electron tomograms and extract organelles and macromolecules. Journal of Structural Biology, 200 (2), 73-86. doi: 10.1016/j.jsb.2017.10.002 |
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2016 Journal Article Treatment with dexamethasone and monophosphoryl lipid a removes disease-associated transcriptional signatures in monocyte-derived dendritic cells from rheumatoid arthritis patients and confers tolerogenic featuresGarcia-Gonzalez, Paulina A., Schinnerling, Katina, Sepulveda-Gutierrez, Alejandro, Maggi, Jaxaira, Hoyos, Lorena, Morales, Rodrigo A., Mehdi, Ahmed M., Nel, Hendrik J., Soto, Lilian, Pesce, Barbara, Carmen Molina, Maria, Cuchacovich, Miguel, Larrondo, Milton L., Neira, Oscar, Francisco Catalan, Diego, Hilkens, Catharien M., Thomas, Ranjeny, Verdugo, Ricardo A. and Aguillon, Juan C. (2016). Treatment with dexamethasone and monophosphoryl lipid a removes disease-associated transcriptional signatures in monocyte-derived dendritic cells from rheumatoid arthritis patients and confers tolerogenic features. Frontiers in Immunology, 7 (OCT) 458, 458. doi: 10.3389/fimmu.2016.00458 |
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2016 Conference Publication Oligoclonally expanded CD4+T cells recognising citrulinated vimentin in peripheral blood of rheumatoid arthritis patientsLaw, S. C., Nel, H. J., Scally, S. W., Mehdi, A., Le Cao, K. -A, Rossjohn, J., Reid, H. H., La Gruta, N. L. and Thomas, R. (2016). Oligoclonally expanded CD4+T cells recognising citrulinated vimentin in peripheral blood of rheumatoid arthritis patients. International Congress of Immunology (ICI 2016), Melbourne, Australia, 21-26 August 2016. Weinheim, Germany: Wiley. doi: 10.1002/eji.201670200 |
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2015 Journal Article Expression profiling pre-diabetic mice to uncover drugs with clinical application to type 1 diabetesPang, Dimeng, Irvine, Katharine M., Mehdi, Ahmed M., Thomas, Helen E., Harris, Mark, Hamilton-Williams, Emma E. and Thomas, Ranjeny (2015). Expression profiling pre-diabetic mice to uncover drugs with clinical application to type 1 diabetes. Clinical and Translational Immunology, 4 (8) e41, e41.1-e41.9. doi: 10.1038/cti.2015.17 |
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2015 Journal Article Citrullinated peptide dendritic cell immunotherapy in HLA risk genotype–positive rheumatoid arthritis patientsBenham, Helen, Nel, Hendrik J., Law, Soi Cheng, Mehdi, Ahmed M., Street, Shayna, Ramnoruth, Nishta, Pahau, Helen, Lee, Bernett T., Ng, Jennifer, Brunck, Marion E. G., Hyde, Claire, Trouw, Leendert A., Dudek, Nadine L., Purcell, Anthony W., O'Sullivan, Brendan J., Connolly, John E., Paul, Sanjoy K., Le Cao, Kim-Anh and Thomas, Ranjeny (2015). Citrullinated peptide dendritic cell immunotherapy in HLA risk genotype–positive rheumatoid arthritis patients. Science Translational Medicine, 7 (290) 290ra87, 290ra87.1-290ra87.11. doi: 10.1126/scitranslmed.aaa9301 |
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2014 Journal Article Dynamics of re-constitution of the human nuclear proteome after cell division is regulated by NLS-adjacent phosphorylationRoona, Gergely, Borsos, Mate, Ellis, Jonathan J., Mehdi, Ahmed M., Christie, Mary, Koornyei, Zsuzsanna, Neubrandt, Mate, Tooth, Judit, Bozooky, Zoltan, Buday, Laszlo, Madaraasz, Emilia, Bodaen, Mikael, Kobe, Bostjan and Veertessy, Beata G. (2014). Dynamics of re-constitution of the human nuclear proteome after cell division is regulated by NLS-adjacent phosphorylation. Cell Cycle, 13 (22), 3551-3564. doi: 10.4161/15384101.2014.960740 |
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2014 Journal Article Predicting the dynamics of protein abundanceMehdi, Ahmed M., Patrick, Ralph, Bailey, Timothy L. and Boden, Mikael (2014). Predicting the dynamics of protein abundance. Molecular and Cellular Proteomics, 13 (5), 1330-1340. doi: 10.1074/mcp.M113.033076 |
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2014 Conference Publication Multiple Mechanisms of Tolerance Characterize the Immune Response to Autologous Modified Dendritic Cells Exposed to Citrullinated Peptides in Patients with Rheumatoid Arthritis.Law, Soi-Cheng, Nel, Hendrik, Mehdi, Ahmed, Le Cao, Kim-Anh and Thomas, Ranjeny (2014). Multiple Mechanisms of Tolerance Characterize the Immune Response to Autologous Modified Dendritic Cells Exposed to Citrullinated Peptides in Patients with Rheumatoid Arthritis.. 2014 ACR/ARHP Annual Meeting, Boston, MA United States, 14-19 November 2014. Hoboken, NJ United States: John Wiley and Sons. doi: 10.1002/art.38914 |
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2013 Journal Article DLocalMotif: a discriminative approach for discovering local motifs in protein sequencesMehdi, Ahmed M., Sehgal, Muhammad Shoaib B., Kobe, Bostjan, Bailey, Timothy L. and Boden, Mikael (2013). DLocalMotif: a discriminative approach for discovering local motifs in protein sequences. Bioinformatics, 29 (1), 39-46. doi: 10.1093/bioinformatics/bts654 |
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2013 Other Outputs Computational models of nucleo-cytoplasmic trafficking by integrating heterogeneous dataMehdi, Ahmed Murtaza (2013). Computational models of nucleo-cytoplasmic trafficking by integrating heterogeneous data. PhD Thesis, Institute for Molecular Bioscience, The University of Queensland. |
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2011 Journal Article Molecular basis for specificity of nuclear import and prediction of nuclear localizationMarfori, Mary, Mynott, Andrew, Ellis, Jonathan J., Mehdi, Ahmed M., Saunders, Neil F. W., Curmi, Paul M., Forwood, Jade K., Bodén, Mikael and Kobe, Bostjan (2011). Molecular basis for specificity of nuclear import and prediction of nuclear localization. Biochimica et Biophysica Acta (BBA): Molecular Cell Research, 1813 (9), 1562-1577. doi: 10.1016/j.bbamcr.2010.10.013 |
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2011 Journal Article A probabilistic model of nuclear import of proteinsMehdi, Ahmed M., Sehgal, Muhammad Shoaib B., Kobe, Bostjan, Bailey, Timothy L. and Boden, Mikael (2011). A probabilistic model of nuclear import of proteins. Bioinformatics, 27 (9) btr121, 1239-1246. doi: 10.1093/bioinformatics/btr121 |
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2011 Conference Publication Performance of different approaches for predicting the subcellular locations of proteins: a reviewRaza, Muhammad Taskeen, Sheikh, Noor M., Fahiem, Muhammad Abuzar and Mehdi, Ahmed M. (2011). Performance of different approaches for predicting the subcellular locations of proteins: a review. INMIC 2011: 14th IEEE International Multitopic Conference, Karachi, Pakistan, 22-24 December, 2011. Piscataway, NJ, USA: IEEE. doi: 10.1109/INMIC.2011.6151518 |
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2010 Journal Article GK based fuzzy clustering for the diagnosis of cardiac arrhythmiaMehdi, Ahmed M., Zayegh, Aladin, Begg, Rezaul and Ali, Rubbiya (2010). GK based fuzzy clustering for the diagnosis of cardiac arrhythmia. International Journal of Computational Intelligence and Applications, 9 (2), 105-123. doi: 10.1142/S146902681000280X |
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2009 Conference Publication K-Means Clustering on 3rd order polynomial based normalization of Acute Myeloid Leukemia (AML) and Acute Lymphocyte Leukemia (ALL)Mehdi, Ahmed M., Sehgal, Mohammad Shoabib, Zayegh, Aladin, Begg, Rezaul and Manan, Abdul (2009). K-Means Clustering on 3rd order polynomial based normalization of Acute Myeloid Leukemia (AML) and Acute Lymphocyte Leukemia (ALL). ICEE 2009: 3rd International Conference on Electrical Engineering, Lahore, Pakistan, 9-11 April, 2009. Piscataway, NJ, USA: IEEE. doi: 10.1109/ICEE.2009.5173170 |
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2009 Conference Publication Computational analysis of sag and swell in electrical power distribution networkParacha, Zahir J., Mehdi, Ahmed M. and Kalam, Akhtar (2009). Computational analysis of sag and swell in electrical power distribution network. AUPEC '09 : 19th Australasian Universities Power Engineering Conference : sustainable energy technologies and systems, Adelaide, SA Australia, 27 - 30 September 2009. Piscataway, NJ United States: I E E E. |
