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2023 Journal Article Multi‐omic and spatial dissection of immunotherapy response groups in non‐small cell lung cancerMonkman, James, Kim, Honesty, Mayer, Aaron, Mehdi, Ahmed, Matigian, Nicholas, Cumberbatch, Marie, Bhagat, Milan, Ladwa, Rahul, Mueller, Scott N., Adams, Mark N., O'Byrne, Ken and Kulasinghe, Arutha (2023). Multi‐omic and spatial dissection of immunotherapy response groups in non‐small cell lung cancer. Immunology, 169 (4), 487-502. doi: 10.1111/imm.13646 |
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2023 Journal Article Identification of MicroRNAs in the West Nile Virus Vector Culex tarsalis (Diptera: Culicidae)Asad, Sultan, Mehdi, Ahmed M., Pujhari, Sujit, Rückert, Claudia, Ebel, Gregory D. and Rasgon, Jason L. (2023). Identification of MicroRNAs in the West Nile Virus Vector Culex tarsalis (Diptera: Culicidae). Journal of Medical Entomology, 60 (2), 282-293. doi: 10.1093/jme/tjac182 |
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2023 Journal Article Genetically encoded Runx3 and CD4+ intestinal epithelial lymphocyte deficiencies link SKG mouse and human predisposition to spondyloarthropathyBhuyan, Zaied Ahmed, Rahman, M. Arifur, Maradana, Muralidhara Rao, Mehdi, Ahmed M., Bergot, Anne-Sophie, Simone, Davide, El-Kurdi, Marya, Garrido-Mesa, Jose, Cai, Cheng Bang Benjamin, Cameron, Amy J., Hanson, Aimee L., Nel, Hendrik J., Kenna, Tony, Leo, Paul, Rehaume, Linda, Brown, Matthew A., Ciccia, Francesco and Thomas, Ranjeny (2023). Genetically encoded Runx3 and CD4+ intestinal epithelial lymphocyte deficiencies link SKG mouse and human predisposition to spondyloarthropathy. Clinical Immunology, 247 109220, 1-14. doi: 10.1016/j.clim.2022.109220 |
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2022 Journal Article HPV status represents dominant trait driving delineation of survival-associated gene co-expression networks in head and neck cancerMehdi, Ahmed M., Zhou, Chenhao, Turrell, Gavin, Walpole, Euan, Porceddu, Sandro, Frazer, Ian H. and Chandra, Janin (2022). HPV status represents dominant trait driving delineation of survival-associated gene co-expression networks in head and neck cancer. Cancer Gene Therapy, 30 (4), 1-12. doi: 10.1038/s41417-022-00577-9 |
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2022 Journal Article Environmental pathways affecting gene expression (E.PAGE) as an R package to predict gene–environment associationsMuralidharan, Sachin, Ali, Sarah, Yang, Lilin, Badshah, Joshua, Zahir, Syeda Farah, Ali, Rubbiya A., Chandra, Janin, Frazer, Ian H., Thomas, Ranjeny and Mehdi, Ahmed M. (2022). Environmental pathways affecting gene expression (E.PAGE) as an R package to predict gene–environment associations. Scientific Reports, 12 (1) 18710, 1-19. doi: 10.1038/s41598-022-21988-6 |
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2022 Conference Publication Delineation of spatial tissue signatures of immunotherapy response groups in non-small cell lung cancer (NSCLC)Kulasinghe, Arutha, Monkman, James, Kim, Honesty, Mayer, Aaron, Mehdi, Ahmed, Cumberbatch, Marie, Bhagat, Milan, Schneider, Fabian, Thaagard, Jeppe, Mansfield, James, Ladwa, Rahul, Mueller, Scott, Adams, Mark and O’byrne, Kenneth (2022). Delineation of spatial tissue signatures of immunotherapy response groups in non-small cell lung cancer (NSCLC). SITC 37th Annual Meeting (SITC 2022), Boston, MA USA, 8-12 November 2022. London, United Kingdom: BMJ Publishing Group. doi: 10.1136/jitc-2022-sitc2022.0118 |
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2022 Journal Article Randomized phase I trial of antigen-specific tolerizing immunotherapy with peptide/calcitriol liposomes in ACPA+ rheumatoid arthritisSonigra, Amee, Nel, Hendrik J., Wehr, Pascale, Ramnoruth, Nishta, Patel, Swati, van Schie, Karin A., Bladen, Maxwell W., Mehdi, Ahmed M., Tesiram, Joanne, Talekar, Meghna, Rossjohn, Jamie, Reid, Hugh H., Stuurman, Frederik E., Roberts, Helen, Vecchio, Phillip, Gourley, Ian, Rigby, Mark, Becart, Stephane, Toes, Rene E.M., Scherer, Hans Ulrich, Lê Cao, Kim-Anh, Campbell, Kim and Thomas, Ranjeny (2022). Randomized phase I trial of antigen-specific tolerizing immunotherapy with peptide/calcitriol liposomes in ACPA+ rheumatoid arthritis. JCI Insight, 7 (20) e160964, 1-18. doi: 10.1172/jci.insight.160964 |
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2022 Conference Publication Multi-omic dissection of immunotherapy response groups in non-small cell lung cancer (NSCLC)Kulasinghe, Arutha, Monkman, James, Kim, Honesty, Mayer, Aaron, Mehdi, Ahmed, Matigian, Nicholas, Cumberbatch, Marie, Bhagat, Milan, Ladwa, Rahul, Mueller, Scott, Adams, Mark and O'Byrne, Ken (2022). Multi-omic dissection of immunotherapy response groups in non-small cell lung cancer (NSCLC). AACR Annual Meeting 2022, New Orleans, LA United States, 8-13 April 2022. Philadelphia, PA United States: American Association for Cancer Research. doi: 10.1158/1538-7445.am2022-2036 |
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2022 Journal Article Dissecting Tissue Compartment-Specific Protein Signatures in Primary and Metastatic Oropharyngeal Squamous Cell CarcinomasSadeghirad, Habib, Monkman, James, Mehdi, Ahmed M., Ladwa, Rahul, O’Byrne, Ken, Hughes, Brett G. M. and Kulasinghe, Arutha (2022). Dissecting Tissue Compartment-Specific Protein Signatures in Primary and Metastatic Oropharyngeal Squamous Cell Carcinomas. Frontiers in Immunology, 13 895513, 1-11. doi: 10.3389/fimmu.2022.895513 |
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2022 Other Outputs GSAO - Gene Set Annotation Overlap (Version 0.1.0)Mehdi, Ahmed (2022). GSAO - Gene Set Annotation Overlap (Version 0.1.0). The University of Queensland. (Dataset) doi: 10.48610/2c1d352 |
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2022 Other Outputs Environmental Pathways DatabaseMehdi, Ahmed (2022). Environmental Pathways Database. The University of Queensland. (Dataset) doi: 10.48610/ee3f1f2 |
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2022 Other Outputs E.PAGE: A curated database and enrichment tool to predict gene modules associated with gene-environment interactionsMuralidharan, Sachin, Ali, Sarah, Yang, Lilin, Badshah, Joshua, Zahir, Farah, Ali, Rubbiya, Chandra, Janin, Thomas, Ranjeny and Mehdi, Ahmed M. (2022). E.PAGE: A curated database and enrichment tool to predict gene modules associated with gene-environment interactions. doi: 10.1101/2022.01.03.474848 |
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2022 Other Outputs PredictPAM. Mehdi, Ahmed (2022). PredictPA. The University of Queensland. (Dataset) doi: 10.48610/a53d449 |
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2022 Other Outputs NucImportMehdi, Ahmed M. (2022). NucImport. The University of Queensland. (Dataset) doi: 10.48610/7bfd689 |
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2022 Other Outputs dLOCALMotifAhmed M. Mehdi (2022). dLOCALMotif. The University of Queensland. (Dataset) doi: 10.48610/79aeb64 |
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2021 Journal Article Acquisition of murine splenic myeloid cells for protein and gene expression profiling by advanced flow cytometry and CITE-seqRødahl, Inga, Gotley, James, Andersen, Stacey B., Yu, Meihua, Mehdi, Ahmed M., Christ, Angelika N., Hamilton-Williams, Emma E., Frazer, Ian H., Lukowski, Samuel W. and Chandra, Janin (2021). Acquisition of murine splenic myeloid cells for protein and gene expression profiling by advanced flow cytometry and CITE-seq. STAR Protocols, 2 (4) 100842, 1-27. doi: 10.1016/j.xpro.2021.100842 |
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2021 Journal Article Key signaling networks are dysregulated in patients with the adipose tissue disorder, lipedemaIshaq, Musarat, Bandara, Nadeeka, Morgan, Steven, Nowell, Cameron, Mehdi, Ahmad M., Lyu, Ruqian, McCarthy, Davis, Anderson, Dovile, Creek, Darren J., Achen, Marc G., Shayan, Ramin and Karnezis, Tara (2021). Key signaling networks are dysregulated in patients with the adipose tissue disorder, lipedema. International Journal of Obesity, 46 (3), 502-514. doi: 10.1038/s41366-021-01002-1 |
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2021 Other Outputs Identification of microRNAs in the West Nile virus vector Culex tarsalisAsad, Sultan, Mehdi, Ahmed M., Pujari, Sujit, Rüeckert, Claudia, Ebel, Gregory D. and Rasgon, Jason L. (2021). Identification of microRNAs in the West Nile virus vector Culex tarsalis. |
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2021 Conference Publication Immune signatures of second-line PD-1 immune checkpoint blockadeO'Byrne, K. J., Monkman, J., Mehdi, A., Matigian, N. and Kulasinghe, A. (2021). Immune signatures of second-line PD-1 immune checkpoint blockade. Congress of the European-Society-for-Medical-Oncology (ESMO), Paris, France, 16-21 September 2021. Amsterdam, Netherlands: Elsevier. doi: 10.1016/j.annonc.2021.08.1904 |
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2021 Other Outputs IL-2 stromal signatures dissect immunotherapy response groups in nonsmall cell lung cancer (NSCLC)Monkman, James, Kim, Honesty, Mayer, Aaron, Mehdi, Ahmed, Matigian, Nicholas, Cumberbatch, Marie, Bhagat, Milan, Ladwa, Rahul, Mueller, Scott N., Adams, Mark N., O’Byrne, Ken and Kulasinghe, Arutha (2021). IL-2 stromal signatures dissect immunotherapy response groups in nonsmall cell lung cancer (NSCLC). doi: 10.1101/2021.08.05.21261528 |
