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2018 Journal Article Variance explained by whole genome sequence variants in coding and regulatory genome annotations for six dairy traitsKoufariotis, Lambros T., Chen, Yi-Ping Phoebe, Stothard, Paul and Hayes, Ben J. (2018). Variance explained by whole genome sequence variants in coding and regulatory genome annotations for six dairy traits. BMC Genomics, 19 (237) 237, 237. doi: 10.1186/s12864-018-4617-x |
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2018 Journal Article Responses of dairy cows with divergent residual feed intake as calves to metabolic challenges during midlactation and the nonlactating periodDiGiacomo, K., Norris, E., Dunshea, F. R., Hayes, B. J., Marett, L. C., Wales, W. J. and Leury, B. J. (2018). Responses of dairy cows with divergent residual feed intake as calves to metabolic challenges during midlactation and the nonlactating period. Journal of Dairy Science, 101 (7), 6474-6485. doi: 10.3168/jds.2017-12569 |
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2018 Journal Article A multi-trait Bayesian method for mapping QTL and genomic predictionKemper, Kathryn E., Bowman, Philip J., Hayes, Benjamin J., Visscher, Peter M. and Goddard, Michael E. (2018). A multi-trait Bayesian method for mapping QTL and genomic prediction. Genetics Selection Evolution, 50 (1) 10, 10. doi: 10.1186/s12711-018-0377-y |
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2018 Journal Article Multibreed genomic prediction using multitrait genomic residual maximum likelihood and multitask Bayesian variable selectionCalus, M. P. L., Goddard, M. E., Wientjes, Y. C. J., Bowman, P. J. and Hayes, B. J. (2018). Multibreed genomic prediction using multitrait genomic residual maximum likelihood and multitask Bayesian variable selection. Journal of Dairy Science, 101 (5), 4279-4294. doi: 10.3168/jds.2017-13366 |
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2018 Journal Article Development of genomic prediction in sorghumHunt, Colleen H., van Eeuwijk, Fred A., Mace, Emma S., Hayes, Ben J. and Jordan, David R. (2018). Development of genomic prediction in sorghum. Crop Science, 58 (2), 690-700. doi: 10.2135/cropsci2017.08.0469 |
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2018 Journal Article Mammalian genomic regulatory regions predicted by utilizing human genomics, transcriptomics, and epigenetics dataNguyen, Quan H., Tellam, Ross L., Naval-Sanchez, Marina, Porto-Neto, Laercio R., Barendse, William, Reverter, Antonio, Hayes, Benjamin, Kijas, James and Dalrymple, Brian P. (2018). Mammalian genomic regulatory regions predicted by utilizing human genomics, transcriptomics, and epigenetics data. Gigascience, 7 (3), 1-17. doi: 10.1093/gigascience/gix136 |
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2018 Journal Article Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammalsBouwman, Aniek C., Daetwyler, Hans D., Chamberlain, Amanda J., Ponce, Carla Hurtado, Sargolzaei, Mehdi, Schenkel, Flavio S., Sahana, Goutam, Govignon-Gion, Armelle, Boitard, Simon, Dolezal, Marlies, Pausch, Hubert, Brøndum, Rasmus F., Bowman, Phil J., Thomsen, Bo, Guldbrandtsen, Bernt, Lund, Mogens S., Servin, Bertrand, Garrick, Dorian J., Reecy, James, Vilkki, Johanna, Bagnato, Alessandro, Wang, Min, Hoff, Jesse L., Schnabel, Robert D., Taylor, Jeremy F., Vinkhuyzen, Anna A. E., Panitz, Frank, Bendixen, Christian, Holm, Lars-Erik ... Hayes, Ben J. (2018). Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals. Nature Genetics, 50 (3), 362-367. doi: 10.1038/s41588-018-0056-5 |
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2018 Journal Article Prospects for increasing yield in macadamia using component traits and genomicsO'Connor, Katie, Hayes, Ben and Topp, Bruce (2018). Prospects for increasing yield in macadamia using component traits and genomics. Tree Genetics & Genomes, 14 (1) 7. doi: 10.1007/s11295-017-1221-1 |
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2018 Journal Article METRIC APPROXIMATIONS OF WREATH PRODUCTSHayes, Ben and Sale, Andrew W. (2018). METRIC APPROXIMATIONS OF WREATH PRODUCTS. Annales De L Institut Fourier, 68 (1), 423-455. doi: 10.5802/aif.3166 |
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2017 Journal Article Rapid Discovery of de Novo Deleterious Mutations in Cattle Enhances the Value of Livestock as Model SpeciesBourneuf, E., Otz, P., Pausch, H., Jagannathan, V., Michot, P., Grohs, C., Piton, G., Ammermüller, S., Deloche, M. C., Fritz, S., Leclerc, H., Péchoux, C., Boukadiri, A., Hozé, C., Saintilan, R., Créchet, F., Mosca, M., Segelke, D., Guillaume, F., Bouet, S., Baur, A., Vasilescu, A., Genestout, L., Thomas, A., Allais-Bonnet, A., Rocha, D., Colle, M. A., Klopp, C., Esquerré, D. ... Capitan, A. (2017). Rapid Discovery of de Novo Deleterious Mutations in Cattle Enhances the Value of Livestock as Model Species. Scientific Reports, 7 (1) 11466, 11466. doi: 10.1038/s41598-017-11523-3 |
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2017 Journal Article Genome-wide association study and annotating candidate gene networks affecting age at first calving in Nellore cattleMota, R. R., Guimarães, S. E. F., Fortes, M. R. S., Hayes, B., Silva, F. F., Verardo, L. L., Kelly, M. J., de Campos, C. F., Guimarães, J. D., Wenceslau, R. R., Penitente-Filho, J. M., Garcia, J. F. and Moore, S. (2017). Genome-wide association study and annotating candidate gene networks affecting age at first calving in Nellore cattle. Journal of Animal Breeding and Genetics, 134 (6), 484-492. doi: 10.1111/jbg.12299 |
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2017 Journal Article Breeding Differently—the Digital Revolution: High-Throughput Phenotyping and GenotypingSlater, Anthony T., Cogan, Noel O. I., Rodoni, Brendan C., Daetwyler, Hans D., Hayes, Benjamin J., Caruana, Brittney, Badenhorst, Pieter E., Spangenberg, German C. and Forster, John W. (2017). Breeding Differently—the Digital Revolution: High-Throughput Phenotyping and Genotyping. Potato Research, 60 (3-4), 337-352. doi: 10.1007/s11540-018-9388-x |
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2017 Journal Article Accelerating wheat breeding for end-use quality with multi-trait genomic predictions incorporating near infrared and nuclear magnetic resonance-derived phenotypesHayes, B. J., Panozzo, J., Walker, C. K., Choy, A. L., Kant, S., Wong, D., Tibbits, J., Daetwyler, H. D., Rochfort, S., Hayden, M. J. and Spangenberg, G. C. (2017). Accelerating wheat breeding for end-use quality with multi-trait genomic predictions incorporating near infrared and nuclear magnetic resonance-derived phenotypes. Theoretical and Applied Genetics, 130 (12), 2505-2519. doi: 10.1007/s00122-017-2972-7 |
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2017 Journal Article Estimated allele substitution effects underlying genomic evaluation models depend on the scaling of allele countsBouwman, Aniek C., Hayes, Ben J. and Calus, Mario P. L. (2017). Estimated allele substitution effects underlying genomic evaluation models depend on the scaling of allele counts. Genetics, Selection, Evolution, 49 (1) 79, 79. doi: 10.1186/s12711-017-0355-9 |
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2017 Journal Article Multi-breed genomic prediction using Bayes R with sequence data and dropping variants with a small effectVan Den Berg, Irene , Bowman, Phil J, MacLeod, Iona M., Hayes, Ben J., Wang, Tingting, Bolormaa, Sunduimijid and Goddard, Mike E. (2017). Multi-breed genomic prediction using Bayes R with sequence data and dropping variants with a small effect. Genetics Selection Evolution, 49 (1) 70, 70. doi: 10.1186/s12711-017-0347-9 |
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2017 Journal Article Short communication: implementation of a breeding value for heat tolerance in Australian dairy cattleNguyen, Thuy T. T., Bowman, Phil J., Haile-Mariam, Mekonnen, Nieuwhof, Gert J., Hayes, Benjamin J. and Pryce, Jennie E. (2017). Short communication: implementation of a breeding value for heat tolerance in Australian dairy cattle. Journal of Dairy Science, 100 (9), 7362-7367. doi: 10.3168/jds.2017-12898 |
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2017 Journal Article Exploring and Harnessing Haplotype Diversity to Improve Yield Stability in CropsQian, Lunwen, Hickey, Lee T., Stahl, Andreas, Werner, Christian R., Hayes, Ben, Snowdon, Rod J. and Voss-Fels, Kai P. (2017). Exploring and Harnessing Haplotype Diversity to Improve Yield Stability in Crops. Frontiers in Plant Science, 8 1534, 1534. doi: 10.3389/fpls.2017.01534 |
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2017 Journal Article Application of a Bayesian non-linear model hybrid scheme to sequence data for genomic prediction and QTL mappingWang, Tingting, Chen, Yi-Ping Phoebe, MacLeod, Iona M., Pryce, Jennie E., Goddard, Michael E. and Hayes, Ben J. (2017). Application of a Bayesian non-linear model hybrid scheme to sequence data for genomic prediction and QTL mapping. BMC Genomics, 18 (1) 618, 618. doi: 10.1186/s12864-017-4030-x |
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2017 Journal Article Putative enhancer sites in the bovine genome are enriched with variants affecting complex traitsWang, Min, Hancock, Timothy P., MacLeod, Iona M., Pryce, Jennie E., Cocks, Benjamin G. and Hayes, Benjamin J. (2017). Putative enhancer sites in the bovine genome are enriched with variants affecting complex traits. Genetics Selection Evolution, 49 (1) 56. doi: 10.1186/s12711-017-0331-4 |
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2017 Journal Article Detection and assessment of copy number variation using PacBio long-read and Illumina sequencing in New Zealand dairy cattleCouldrey, C., Keehan, M., Johnson, T., Tiplady, K., Winkelman, A., Littlejohn, M. D., Scott, A., Kemper, K. E., Hayes, B., Davis, S. R. and Spelman, R. J. (2017). Detection and assessment of copy number variation using PacBio long-read and Illumina sequencing in New Zealand dairy cattle. Journal of Dairy Science, 100 (7), 5472-5478. doi: 10.3168/jds.2016-12199 |
