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2024

Journal Article

Expression network analysis of bovine skin infested with Rhipicephalus australis identifies pro-inflammatory genes contributing to tick susceptibility

Mantilla Valdivieso, Emily F., Ross, Elizabeth M., Raza, Ali, Nguyen, Loan, Hayes, Ben J., Jonsson, Nicholas N., James, Peter and Tabor, Ala E. (2024). Expression network analysis of bovine skin infested with Rhipicephalus australis identifies pro-inflammatory genes contributing to tick susceptibility. Scientific Reports, 14 (1) 4419, 1-14. doi: 10.1038/s41598-024-54577-w

Expression network analysis of bovine skin infested with Rhipicephalus australis identifies pro-inflammatory genes contributing to tick susceptibility

2024

Journal Article

Stacking beneficial haplotypes from the Vavilov wheat collection to accelerate breeding for multiple disease resistance

Tong, Jingyang, Tarekegn, Zerihun T., Jambuthenne, Dilani, Alahmad, Samir, Periyannan, Sambasivam, Hickey, Lee, Dinglasan, Eric and Hayes, Ben (2024). Stacking beneficial haplotypes from the Vavilov wheat collection to accelerate breeding for multiple disease resistance. Theoretical and Applied Genetics, 137 (12) 274, 1-15. doi: 10.1007/s00122-024-04784-w

Stacking beneficial haplotypes from the Vavilov wheat collection to accelerate breeding for multiple disease resistance

2024

Journal Article

Investigating genotype by environment interaction for beef cattle fertility traits in commercial herds in northern Australia with multi-trait analysis

Copley, James P., Hayes, Benjamin J., Ross, Elizabeth M., Speight, Shannon, Fordyce, Geoffry, Wood, Benjamin J. and Engle, Bailey N. (2024). Investigating genotype by environment interaction for beef cattle fertility traits in commercial herds in northern Australia with multi-trait analysis. Genetics Selection Evolution, 56 (1) 70. doi: 10.1186/s12711-024-00936-0

Investigating genotype by environment interaction for beef cattle fertility traits in commercial herds in northern Australia with multi-trait analysis

2024

Journal Article

Genomic Prediction and Genome‐Wide Association Studies for Productivity, Conformation and Heat Tolerance Traits in Tropical Smallholder Dairy Cows

Bang, Nguyen N., Hayes, Ben J., Lyons, Russell E., Randhawa, Imtiaz A. S., Gaughan, John B., Trach, Nguyen X. and McNeill, David M. (2024). Genomic Prediction and Genome‐Wide Association Studies for Productivity, Conformation and Heat Tolerance Traits in Tropical Smallholder Dairy Cows. Journal of Animal Breeding and Genetics. doi: 10.1111/jbg.12907

Genomic Prediction and Genome‐Wide Association Studies for Productivity, Conformation and Heat Tolerance Traits in Tropical Smallholder Dairy Cows

2024

Journal Article

Potential approaches to create ultimate genotypes in crops and livestock

Hayes, Ben J., Mahony, Timothy J., Villiers, Kira, Warburton, Christie, Kemper, Kathryn E., Dinglasan, Eric, Robinson, Hannah, Powell, Owen, Voss-Fels, Kai, Godwin, Ian D. and Hickey, Lee T. (2024). Potential approaches to create ultimate genotypes in crops and livestock. Nature Genetics, 56 (11), 2310-2317. doi: 10.1038/s41588-024-01942-0

Potential approaches to create ultimate genotypes in crops and livestock

2024

Journal Article

Whole-genome comparison using complete genomes from Campylobacter fetus strains revealed single nucleotide polymorphisms on non-genomic islands for subspecies differentiation

Ong, Chian Teng, Blackall, Patrick. J., Boe-Hansen, Gry B., deWet, Sharon, Hayes, Ben J., Indjein, Lea, Korolik, Victoria, Minchin, Catherine, Nguyen, Loan To, Nordin, Yusralimuna, Siddle, Hannah, Turni, Conny, Venus, Bronwyn, Westman, Mark E., Zhang, Zhetao and Tabor, Ala E. (2024). Whole-genome comparison using complete genomes from Campylobacter fetus strains revealed single nucleotide polymorphisms on non-genomic islands for subspecies differentiation. Frontiers in Microbiology, 15 1452564. doi: 10.3389/fmicb.2024.1452564

Whole-genome comparison using complete genomes from Campylobacter fetus strains revealed single nucleotide polymorphisms on non-genomic islands for subspecies differentiation

2024

Journal Article

Dissecting loci that underpin the genetic correlations between production, fertility, and urea traits in Australian Holstein cattle

Olasege, Babatunde S., van den Berg, Irene, Haile‐Mariam, Mekonnen, Ho, Phuong N., Yin Oh, Zhen, Porto‐Neto, Laercio R., Hayes, Ben J., Pryce, Jennie E. and Fortes, Marina R. S. (2024). Dissecting loci that underpin the genetic correlations between production, fertility, and urea traits in Australian Holstein cattle. Animal Genetics, 55 (4), 540-558. doi: 10.1111/age.13455

Dissecting loci that underpin the genetic correlations between production, fertility, and urea traits in Australian Holstein cattle

2024

Journal Article

Genome-wide atlas of rust resistance loci in wheat

Tong, Jingyang, Zhao, Cong, Liu, Dan, Jambuthenne, Dilani T., Sun, Mengjing, Dinglasan, Eric, Periyannan, Sambasivam K., Hickey, Lee T. and Hayes, Ben J. (2024). Genome-wide atlas of rust resistance loci in wheat. Theoretical and Applied Genetics, 137 (8) 179, 1-16. doi: 10.1007/s00122-024-04689-8

Genome-wide atlas of rust resistance loci in wheat

2024

Journal Article

Genome-wide association and expression quantitative trait loci in cattle reveals common genes regulating mammalian fertility

Forutan, Mehrnush, Engle, Bailey N., Chamberlain, Amanda J., Ross, Elizabeth M., Nguyen, Loan T., D’Occhio, Michael J., Snr, Alf Collins, Kho, Elise A., Fordyce, Geoffry, Speight, Shannon, Goddard, Michael E. and Hayes, Ben J. (2024). Genome-wide association and expression quantitative trait loci in cattle reveals common genes regulating mammalian fertility. Communications Biology, 7 (1) 724, 724. doi: 10.1038/s42003-024-06403-2

Genome-wide association and expression quantitative trait loci in cattle reveals common genes regulating mammalian fertility

2024

Journal Article

On sofic approximations of non amenable groups

Hayes, Ben and Elayavalli, Srivatsav Kunnawalkam (2024). On sofic approximations of non amenable groups. Mathematische Zeitschrift, 307 (2) 38. doi: 10.1007/s00209-024-03509-5

On sofic approximations of non amenable groups

2024

Journal Article

Evolutionary computing to assemble standing genetic diversity and achieve long‐term genetic gain

Villiers, Kira, Voss‐Fels, Kai P., Dinglasan, Eric, Jacobs, Bertus, Hickey, Lee and Hayes, Ben J. (2024). Evolutionary computing to assemble standing genetic diversity and achieve long‐term genetic gain. The Plant Genome, 17 (2) e20467, e20467. doi: 10.1002/tpg2.20467

Evolutionary computing to assemble standing genetic diversity and achieve long‐term genetic gain

2024

Journal Article

Genetic influence on within-person longitudinal change in anthropometric traits in the UK Biobank

Kemper, Kathryn E., Sidorenko, Julia, Wang, Huanwei, Hayes, Ben J., Wray, Naomi R., Yengo, Loic, Keller, Matthew C., Goddard, Michael and Visscher, Peter M. (2024). Genetic influence on within-person longitudinal change in anthropometric traits in the UK Biobank. Nature Communications, 15 (1) 3776, 3776. doi: 10.1038/s41467-024-47802-7

Genetic influence on within-person longitudinal change in anthropometric traits in the UK Biobank

2024

Journal Article

Epidemiological risk factors and modelling approaches for risk assessment of lumpy skin disease virus introduction and spread: methodological review and implications for risk-based surveillance in Australia

Owada, Kei, Mahony, Timothy J., Ambrose, Rebecca K., Hayes, Ben J. and Soares Magalhães, Ricardo J. (2024). Epidemiological risk factors and modelling approaches for risk assessment of lumpy skin disease virus introduction and spread: methodological review and implications for risk-based surveillance in Australia. Transboundary and Emerging Diseases, 2024 (1) 3090226, 1-16. doi: 10.1155/2024/3090226

Epidemiological risk factors and modelling approaches for risk assessment of lumpy skin disease virus introduction and spread: methodological review and implications for risk-based surveillance in Australia

2024

Journal Article

Genomic prediction for sugarcane diseases including hybrid Bayesian-machine learning approaches

Chen, Chensong, Bhuiyan, Shamsul A., Ross, Elizabeth, Powell, Owen, Dinglasan, Eric, Wei, Xianming, Atkin, Felicity, Deomano, Emily and Hayes, Ben (2024). Genomic prediction for sugarcane diseases including hybrid Bayesian-machine learning approaches. Frontiers in Plant Science, 15 1398903, 1-13. doi: 10.3389/fpls.2024.1398903

Genomic prediction for sugarcane diseases including hybrid Bayesian-machine learning approaches

2024

Journal Article

Genomic estimated breeding values for bovine respiratory disease resistance in Angus feedlot cattle

Hayes, B. J., Duff, C. J., Hine, B. C. and Mahony, T. J. (2024). Genomic estimated breeding values for bovine respiratory disease resistance in Angus feedlot cattle. Journal of Animal Science, 102 skae113. doi: 10.1093/jas/skae113

Genomic estimated breeding values for bovine respiratory disease resistance in Angus feedlot cattle

2024

Journal Article

Pleomorphic adenoma gene (PLAG1) in reproduction and implication for embryonic survival in cattle: a review

D’Occhio, Michael J., Campanile, Giuseppe, Baruselli, Pietro S., Porto Neto, Laercio R., Hayes, Ben J., Collins, Alf and Fortes, Marina R. S. (2024). Pleomorphic adenoma gene (PLAG1) in reproduction and implication for embryonic survival in cattle: a review. Journal of Animal Science, 102 skae103, 1-12. doi: 10.1093/jas/skae103

Pleomorphic adenoma gene (PLAG1) in reproduction and implication for embryonic survival in cattle: a review

2024

Journal Article

Genomic regions and biological pathways associated with sex-limited reproductive traits in bovine species

Olasege, Babatunde S., Oh, Zhen Yin, Tahir, Muhammad S., Porto-Neto, Laercio R, Hayes, Ben J. and Fortes, Marina R. S. (2024). Genomic regions and biological pathways associated with sex-limited reproductive traits in bovine species. Journal of Animal Science, 102 skae085, 1-10. doi: 10.1093/jas/skae085

Genomic regions and biological pathways associated with sex-limited reproductive traits in bovine species

2024

Journal Article

Approximate homomorphisms and sofic approximations of orbit equivalence relations

Hayes, Ben and Kunnawalkam Elayavalli, Srivatsav (2024). Approximate homomorphisms and sofic approximations of orbit equivalence relations. Ergodic Theory and Dynamical Systems, 44 (12), 3455-3480. doi: 10.1017/etds.2024.22

Approximate homomorphisms and sofic approximations of orbit equivalence relations

2024

Journal Article

Vanishing first cohomology and strong 1-boundedness for von Neumann algebras

Hayes, Ben, Jekel, David and Elayavalli, Srivatsav Kunnawalkam (2024). Vanishing first cohomology and strong 1-boundedness for von Neumann algebras. Journal of Noncommutative Geometry, 18 (1), 383-409. doi: 10.4171/JNCG/530

Vanishing first cohomology and strong 1-boundedness for von Neumann algebras

2023

Journal Article

Imputation strategies for genomic prediction using nanopore sequencing

Lamb, H. J., Nguyen, L. T., Copley, J. P., Engle, B. N., Hayes, B. J. and Ross, E. M. (2023). Imputation strategies for genomic prediction using nanopore sequencing. BMC Biology, 21 (1) 286, 1-18. doi: 10.1186/s12915-023-01782-0

Imputation strategies for genomic prediction using nanopore sequencing