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2024 Journal Article Expression network analysis of bovine skin infested with Rhipicephalus australis identifies pro-inflammatory genes contributing to tick susceptibilityMantilla Valdivieso, Emily F., Ross, Elizabeth M., Raza, Ali, Nguyen, Loan, Hayes, Ben J., Jonsson, Nicholas N., James, Peter and Tabor, Ala E. (2024). Expression network analysis of bovine skin infested with Rhipicephalus australis identifies pro-inflammatory genes contributing to tick susceptibility. Scientific Reports, 14 (1) 4419, 1-14. doi: 10.1038/s41598-024-54577-w |
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2024 Journal Article Stacking beneficial haplotypes from the Vavilov wheat collection to accelerate breeding for multiple disease resistanceTong, Jingyang, Tarekegn, Zerihun T., Jambuthenne, Dilani, Alahmad, Samir, Periyannan, Sambasivam, Hickey, Lee, Dinglasan, Eric and Hayes, Ben (2024). Stacking beneficial haplotypes from the Vavilov wheat collection to accelerate breeding for multiple disease resistance. Theoretical and Applied Genetics, 137 (12) 274, 1-15. doi: 10.1007/s00122-024-04784-w |
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2024 Journal Article Investigating genotype by environment interaction for beef cattle fertility traits in commercial herds in northern Australia with multi-trait analysisCopley, James P., Hayes, Benjamin J., Ross, Elizabeth M., Speight, Shannon, Fordyce, Geoffry, Wood, Benjamin J. and Engle, Bailey N. (2024). Investigating genotype by environment interaction for beef cattle fertility traits in commercial herds in northern Australia with multi-trait analysis. Genetics Selection Evolution, 56 (1) 70. doi: 10.1186/s12711-024-00936-0 |
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2024 Journal Article Genomic Prediction and Genome‐Wide Association Studies for Productivity, Conformation and Heat Tolerance Traits in Tropical Smallholder Dairy CowsBang, Nguyen N., Hayes, Ben J., Lyons, Russell E., Randhawa, Imtiaz A. S., Gaughan, John B., Trach, Nguyen X. and McNeill, David M. (2024). Genomic Prediction and Genome‐Wide Association Studies for Productivity, Conformation and Heat Tolerance Traits in Tropical Smallholder Dairy Cows. Journal of Animal Breeding and Genetics, 142 (3), 322-341. doi: 10.1111/jbg.12907 |
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2024 Journal Article Potential approaches to create ultimate genotypes in crops and livestockHayes, Ben J., Mahony, Timothy J., Villiers, Kira, Warburton, Christie, Kemper, Kathryn E., Dinglasan, Eric, Robinson, Hannah, Powell, Owen, Voss-Fels, Kai, Godwin, Ian D. and Hickey, Lee T. (2024). Potential approaches to create ultimate genotypes in crops and livestock. Nature Genetics, 56 (11), 2310-2317. doi: 10.1038/s41588-024-01942-0 |
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2024 Journal Article Whole-genome comparison using complete genomes from Campylobacter fetus strains revealed single nucleotide polymorphisms on non-genomic islands for subspecies differentiationOng, Chian Teng, Blackall, Patrick. J., Boe-Hansen, Gry B., deWet, Sharon, Hayes, Ben J., Indjein, Lea, Korolik, Victoria, Minchin, Catherine, Nguyen, Loan To, Nordin, Yusralimuna, Siddle, Hannah, Turni, Conny, Venus, Bronwyn, Westman, Mark E., Zhang, Zhetao and Tabor, Ala E. (2024). Whole-genome comparison using complete genomes from Campylobacter fetus strains revealed single nucleotide polymorphisms on non-genomic islands for subspecies differentiation. Frontiers in Microbiology, 15 1452564. doi: 10.3389/fmicb.2024.1452564 |
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2024 Journal Article Dissecting loci that underpin the genetic correlations between production, fertility, and urea traits in Australian Holstein cattleOlasege, Babatunde S., van den Berg, Irene, Haile‐Mariam, Mekonnen, Ho, Phuong N., Yin Oh, Zhen, Porto‐Neto, Laercio R., Hayes, Ben J., Pryce, Jennie E. and Fortes, Marina R. S. (2024). Dissecting loci that underpin the genetic correlations between production, fertility, and urea traits in Australian Holstein cattle. Animal Genetics, 55 (4), 540-558. doi: 10.1111/age.13455 |
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2024 Journal Article Genome-wide atlas of rust resistance loci in wheatTong, Jingyang, Zhao, Cong, Liu, Dan, Jambuthenne, Dilani T., Sun, Mengjing, Dinglasan, Eric, Periyannan, Sambasivam K., Hickey, Lee T. and Hayes, Ben J. (2024). Genome-wide atlas of rust resistance loci in wheat. Theoretical and Applied Genetics, 137 (8) 179, 1-16. doi: 10.1007/s00122-024-04689-8 |
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2024 Journal Article Genome-wide association and expression quantitative trait loci in cattle reveals common genes regulating mammalian fertilityForutan, Mehrnush, Engle, Bailey N., Chamberlain, Amanda J., Ross, Elizabeth M., Nguyen, Loan T., D’Occhio, Michael J., Snr, Alf Collins, Kho, Elise A., Fordyce, Geoffry, Speight, Shannon, Goddard, Michael E. and Hayes, Ben J. (2024). Genome-wide association and expression quantitative trait loci in cattle reveals common genes regulating mammalian fertility. Communications Biology, 7 (1) 724, 724. doi: 10.1038/s42003-024-06403-2 |
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2024 Journal Article On sofic approximations of non amenable groupsHayes, Ben and Elayavalli, Srivatsav Kunnawalkam (2024). On sofic approximations of non amenable groups. Mathematische Zeitschrift, 307 (2) 38. doi: 10.1007/s00209-024-03509-5 |
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2024 Journal Article Evolutionary computing to assemble standing genetic diversity and achieve long‐term genetic gainVilliers, Kira, Voss‐Fels, Kai P., Dinglasan, Eric, Jacobs, Bertus, Hickey, Lee and Hayes, Ben J. (2024). Evolutionary computing to assemble standing genetic diversity and achieve long‐term genetic gain. The Plant Genome, 17 (2) e20467, e20467. doi: 10.1002/tpg2.20467 |
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2024 Journal Article Genetic influence on within-person longitudinal change in anthropometric traits in the UK BiobankKemper, Kathryn E., Sidorenko, Julia, Wang, Huanwei, Hayes, Ben J., Wray, Naomi R., Yengo, Loic, Keller, Matthew C., Goddard, Michael and Visscher, Peter M. (2024). Genetic influence on within-person longitudinal change in anthropometric traits in the UK Biobank. Nature Communications, 15 (1) 3776, 3776. doi: 10.1038/s41467-024-47802-7 |
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2024 Journal Article Epidemiological risk factors and modelling approaches for risk assessment of lumpy skin disease virus introduction and spread: methodological review and implications for risk-based surveillance in AustraliaOwada, Kei, Mahony, Timothy J., Ambrose, Rebecca K., Hayes, Ben J. and Soares Magalhães, Ricardo J. (2024). Epidemiological risk factors and modelling approaches for risk assessment of lumpy skin disease virus introduction and spread: methodological review and implications for risk-based surveillance in Australia. Transboundary and Emerging Diseases, 2024 (1) 3090226, 1-16. doi: 10.1155/2024/3090226 |
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2024 Journal Article Genomic prediction for sugarcane diseases including hybrid Bayesian-machine learning approachesChen, Chensong, Bhuiyan, Shamsul A., Ross, Elizabeth, Powell, Owen, Dinglasan, Eric, Wei, Xianming, Atkin, Felicity, Deomano, Emily and Hayes, Ben (2024). Genomic prediction for sugarcane diseases including hybrid Bayesian-machine learning approaches. Frontiers in Plant Science, 15 1398903, 1-13. doi: 10.3389/fpls.2024.1398903 |
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2024 Journal Article Genomic estimated breeding values for bovine respiratory disease resistance in Angus feedlot cattleHayes, B. J., Duff, C. J., Hine, B. C. and Mahony, T. J. (2024). Genomic estimated breeding values for bovine respiratory disease resistance in Angus feedlot cattle. Journal of Animal Science, 102 skae113. doi: 10.1093/jas/skae113 |
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2024 Journal Article Pleomorphic adenoma gene (PLAG1) in reproduction and implication for embryonic survival in cattle: a reviewD’Occhio, Michael J., Campanile, Giuseppe, Baruselli, Pietro S., Porto Neto, Laercio R., Hayes, Ben J., Collins, Alf and Fortes, Marina R. S. (2024). Pleomorphic adenoma gene (PLAG1) in reproduction and implication for embryonic survival in cattle: a review. Journal of Animal Science, 102 skae103, 1-12. doi: 10.1093/jas/skae103 |
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2024 Journal Article Genomic regions and biological pathways associated with sex-limited reproductive traits in bovine speciesOlasege, Babatunde S., Oh, Zhen Yin, Tahir, Muhammad S., Porto-Neto, Laercio R, Hayes, Ben J. and Fortes, Marina R. S. (2024). Genomic regions and biological pathways associated with sex-limited reproductive traits in bovine species. Journal of Animal Science, 102 skae085, 1-10. doi: 10.1093/jas/skae085 |
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2024 Journal Article Approximate homomorphisms and sofic approximations of orbit equivalence relationsHayes, Ben and Kunnawalkam Elayavalli, Srivatsav (2024). Approximate homomorphisms and sofic approximations of orbit equivalence relations. Ergodic Theory and Dynamical Systems, 44 (12), 3455-3480. doi: 10.1017/etds.2024.22 |
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2024 Journal Article Vanishing first cohomology and strong 1-boundedness for von Neumann algebrasHayes, Ben, Jekel, David and Elayavalli, Srivatsav Kunnawalkam (2024). Vanishing first cohomology and strong 1-boundedness for von Neumann algebras. Journal of Noncommutative Geometry, 18 (1), 383-409. doi: 10.4171/JNCG/530 |
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2023 Journal Article Imputation strategies for genomic prediction using nanopore sequencingLamb, H. J., Nguyen, L. T., Copley, J. P., Engle, B. N., Hayes, B. J. and Ross, E. M. (2023). Imputation strategies for genomic prediction using nanopore sequencing. BMC Biology, 21 (1) 286, 1-18. doi: 10.1186/s12915-023-01782-0 |
