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2016 Journal Article Genomic selection for tolerance to heat stress in Australian dairy cattleNguyen, Thuy T. T., Bowman, Phil J., Haile-Mariam, Mekonnen, Pryce, Jennie E. and Hayes, Benjamin J. (2016). Genomic selection for tolerance to heat stress in Australian dairy cattle. Journal of Dairy Science, 99 (4), 2849-2862. doi: 10.3168/jds.2015-9685 |
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2016 Journal Article Detailed phenotyping identifies genes with pleiotropic effects on body compositionBolormaa, Sunduimijid, Hayes, Ben J., van der Werf, Julius H. J., Pethick, David, Goddard, Michael E. and Daetwyler, Hans D. (2016). Detailed phenotyping identifies genes with pleiotropic effects on body composition. BMC Genomics, 17 (224) 224, 1-21. doi: 10.1186/s12864-016-2538-0 |
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2016 Journal Article Technical note: equivalent genomic models with a residual polygenic effectLiu, Z., Goddard, M. E., Hayes, B. J., Reinhardt, F. and Reents, R. (2016). Technical note: equivalent genomic models with a residual polygenic effect. Journal of Dairy Science, 99 (3), 2016-2025. doi: 10.3168/jds.2015-10394 |
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2016 Journal Article Genomic heritabilities and genomic estimated breeding values for methane traits in Angus cattleHayes, B. J., Donoghue, K. A., Reich, C. M., Mason, B. A., Bird-Gardiner, T., Herd, R. M. and Arthur, P. F. (2016). Genomic heritabilities and genomic estimated breeding values for methane traits in Angus cattle. Journal of Animal Science, 94 (3), 902-908. doi: 10.2527/jas2015-0078 |
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2016 Journal Article Genetic gain and inbreeding from genomic selection in a simulated commercial breeding program for perennial ryegrassLin, Zibei, Cogan, Noel O. I., Pembleton, Luke W., Spangenberg, German C., Forster, John W., Hayes, Ben J. and Daetwyler, Hans D. (2016). Genetic gain and inbreeding from genomic selection in a simulated commercial breeding program for perennial ryegrass. Plant Genome, 9 (1), 876-883. doi: 10.3835/plantgenome2015.06.0046 |
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2016 Journal Article Accounting for dominance to improve genomic evaluations of dairy cows for fertility and milk production traitsAliloo, Hassan, Pryce, Jennie E., Gonzalez-Recio, Oscar, Cocks, Benjamin G. and Hayes, Ben J. (2016). Accounting for dominance to improve genomic evaluations of dairy cows for fertility and milk production traits. Genetics Selection Evolution, 48 (1) 186, 8.1-8.11. doi: 10.1186/s12711-016-0186-0 |
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2016 Journal Article Targeted imputation of sequence variants and gene expression profiling identifies twelve candidate genes associated with lactation volume, composition and calving interval in dairy cattleRaven, Lesley-Ann, Cocks, Benjamin G., Kemper, Kathryn E., Chamberlain, Amanda J., Vander Jagt, Christy J., Goddard, Michael E. and Hayes, Ben J. (2016). Targeted imputation of sequence variants and gene expression profiling identifies twelve candidate genes associated with lactation volume, composition and calving interval in dairy cattle. Mammalian Genome, 27 (1-2), 81-97. doi: 10.1007/s00335-015-9613-8 |
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2016 Journal Article Exploiting biological priors and sequence variants enhances QTL discovery and genomic prediction of complex traitsMacLeod, I. M., Bowman, P. J., Vander Jagt, C. J., Haile-Mariam, M., Kemper, K. E., Chamberlain, A. J., Schrooten, C., Hayes, B. J. and Goddard, M. E. (2016). Exploiting biological priors and sequence variants enhances QTL discovery and genomic prediction of complex traits. BMC Genomics, 17 (1) 144. doi: 10.1186/s12864-016-2443-6 |
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2016 Journal Article Reducing the carbon footprint of Australian milk production by mitigation of enteric methane emissionsMoate, Peter J., Deighton, Matthew H., Williams, S. Richard O., Pryce, Jennie E., Hayes, Ben J., Jacobs, Joe L., Eckard, Richard J., Hannah, Murray C. and Wales, William J. (2016). Reducing the carbon footprint of Australian milk production by mitigation of enteric methane emissions. Animal Production Science, 56 (7), 1017-1034. doi: 10.1071/AN15222 |
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2016 Journal Article Genomic selection: a paradigm shift in animal breedingMeuwissen, Theo, Hayes, Ben and Goddard, Mike (2016). Genomic selection: a paradigm shift in animal breeding. Animal Frontiers, 6 (1), 6-14. doi: 10.2527/af.2016-0002 |
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2016 Journal Article Differentially expressed genes in endometrium and corpus luteum of holstein cows selected for high and low fertility are enriched for sequence variants associated with fertilityMoore, Stephen G., Pryce, Jennie E., Hayes, Ben J., Chamberlain, Amanda J., Kemper, Kathryn E., Berry, Donagh P., McCabe, Matt, Cormican, Paul, Lonergan, Pat, Fair, Trudee and Butler, Stephen T. (2016). Differentially expressed genes in endometrium and corpus luteum of holstein cows selected for high and low fertility are enriched for sequence variants associated with fertility. Biology of Reproduction, 94 (1) 19. doi: 10.1095/biolreprod.115.132951 |
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2016 Journal Article Accuracy and computational efficiency of genomic selection with high-density SNP and whole-genome sequence dataWang, Tingting, Chen, Yi-Ping Phoebe and Hayes, Ben (2016). Accuracy and computational efficiency of genomic selection with high-density SNP and whole-genome sequence data. CAB Reviews: Perspectives in Agriculture, Veterinary Science, Nutrition and Natural Resources, 11 (034) 034, 1-18. doi: 10.1079/PAVSNNR201611034 |
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2015 Journal Article Accuracy of genotype imputation based on random and selected reference sets in purebred and crossbred sheep populations and its effect on accuracy of genomic predictionMoghaddar, Nasir, Gore, Klint P., Daetwyler, Hans D., Hayes, Ben J. and van der Werf, Julius H. J. (2015). Accuracy of genotype imputation based on random and selected reference sets in purebred and crossbred sheep populations and its effect on accuracy of genomic prediction. Genetics Selection Evolution, 47 (1) 175. doi: 10.1186/s12711-015-0175-8 |
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2015 Journal Article Rare variants in transcript and potential regulatory regions explain a small percentage of the missing heritability of complex traits in cattleGonzalez-Recio, Oscar, Daetwyler, Hans D., MacLeod, Iona M., Pryce, Jennie E., Bowman, Phil J., Hayes, Ben J. and Goddard, Michael E. (2015). Rare variants in transcript and potential regulatory regions explain a small percentage of the missing heritability of complex traits in cattle. PLoS One, 10 (12) e0143945, e0143945. doi: 10.1371/journal.pone.0143945 |
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2015 Journal Article Extensive variation between tissues in allele specific expression in an outbred mammalChamberlain, Amanda J., Vander Jagt, Christy J., Hayes, Benjamin J., Khansefid, Majid, Marett, Leah C., Millen, Catriona A., Nguyen, Thuy T. T. and Goddard, Michael E. (2015). Extensive variation between tissues in allele specific expression in an outbred mammal. BMC Genomics, 16 (1) 993. doi: 10.1186/s12864-015-2174-0 |
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2015 Journal Article Two-variance-component model improves genetic prediction in family datasetsTucker, George, Loh, Po-Ru, MacLeod, Iona M., Hayes, Ben J., Goddard, Michael E., Berger, Bonnie and Price, Alkes L. (2015). Two-variance-component model improves genetic prediction in family datasets. American Journal of Human Genetics, 97 (5), 677-690. doi: 10.1016/j.ajhg.2015.10.002 |
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2015 Journal Article A catalogue of novel bovine long noncoding RNA across 18 tissuesKoufariotis, Lambros T., Chen, Yi-Ping Phoebe, Chamberlain, Amanda, Jagt, Christy Vander and Hayes, Ben J. (2015). A catalogue of novel bovine long noncoding RNA across 18 tissues. PLoS One, 10 (10) e0141225, e0141225. doi: 10.1371/journal.pone.0141225 |
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2015 Journal Article Hot topic: Definition and implementation of a breeding value for feed efficiency in dairy cowsPryce, J. E., Gonzalez-Recio, O., Nieuwhof, G., Wales, W. J., Coffey, M. P., Hayes, B. J. and Goddard, M. E. (2015). Hot topic: Definition and implementation of a breeding value for feed efficiency in dairy cows. Journal of Dairy Science, 98 (10) 73864, 7340-7350. doi: 10.3168/jds.2015-9621 |
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2015 Journal Article Design of a low-density SNP chip for the main Australian sheep breeds and its effect on imputation and genomic prediction accuracyBolormaa, S., Gore, K., van der Werf, J. H. J., Hayes, B. J. and Daetwyler, H. D. (2015). Design of a low-density SNP chip for the main Australian sheep breeds and its effect on imputation and genomic prediction accuracy. Animal Genetics, 46 (5), 544-556. doi: 10.1111/age.12340 |
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2015 Journal Article Selection on optimal haploid value increases genetic gain and preserves more genetic diversity relative to genomic selectionDaetwyler, Hans D., Hayden, Matthew J., Spangenberg, German C. and Hayes, Ben J. (2015). Selection on optimal haploid value increases genetic gain and preserves more genetic diversity relative to genomic selection. Genetics, 200 (4), 1341-1348. doi: 10.1534/genetics.115.178038 |
