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2023 Journal Article International pediatric COVID-19 severity over the course of the pandemicZhu, Yanshan, Almeida, Flávia Jacqueline, Baillie, J Kenneth, Bowen, Asha C, Britton, Philip N, Brizuela, Martin Eduardo, Buonsenso, Danilo, Burgner, David, Chew, Keng Yih, Chokephaibulkit, Kulkanya, Cohen, Cheryl, Cormier, Stephania A, Crawford, Nigel, Curtis, Nigel, Farias, Camila G A, Gilks, Charles F, von Gottberg, Anne, Hamer, Diana, Jarovsky, Daniel, Jassat, Waasila, Jesus, Ana Rita, Kemp, Lisa S, Khumcha, Benjawan, McCallum, Georgina, Miller, Jessica E, Morello, Rosa, Munro, Alasdair P S, Openshaw, Peter J M, Padmanabhan, Srivatsan ... Short, Kirsty R (2023). International pediatric COVID-19 severity over the course of the pandemic. JAMA Pediatrics, 177 (10), 1073-1084. doi: 10.1001/jamapediatrics.2023.3117 |
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2023 Journal Article A robust platform for integrative spatial multi‐omics analysis to map immune responses to SARS‐CoV‐2 infection in lung tissuesTan, Xiao, Grice, Laura F., Tran, Minh, Mulay, Onkar, Monkman, James, Blick, Tony, Vo, Tuan, Almeida, Ana Clara, da Silva Motta, Jarbas, Fernandes de Moura, Karen, Machado‐Souza, Cleber, Souza‐Fonseca‐Guimaraes, Paulo, Baena, Cristina Pellegrino, de Noronha, Lucia, Guimaraes, Fernanda Simoes Fortes, Luu, Hung N., Drennon, Tingsheng, Williams, Stephen, Stern, Jacob, Uytingco, Cedric, Pan, Liuliu, Nam, Andy, Cooper, Caroline, Short, Kirsty, Belz, Gabrielle T., Souza‐Fonseca‐Guimaraes, Fernando, Kulasinghe, Arutha and Nguyen, Quan (2023). A robust platform for integrative spatial multi‐omics analysis to map immune responses to SARS‐CoV‐2 infection in lung tissues. Immunology, 170 (3), 401-418. doi: 10.1111/imm.13679 |
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2023 Journal Article In vivo inhibition of nuclear ACE2 translocation protects against SARS-CoV-2 replication and lung damage through epigenetic imprintingTu, Wen Juan, Melino, Michelle, Dunn, Jenny, McCuaig, Robert D., Bielefeldt-Ohmann, Helle, Tsimbalyuk, Sofiya, Forwood, Jade K., Ahuja, Taniya, Vandermeide, John, Tan, Xiao, Tran, Minh, Nguyen, Quan, Zhang, Liang, Nam, Andy, Pan, Liuliu, Liang, Yan, Smith, Corey, Lineburg, Katie, Nguyen, Tam H., Sng, Julian D. J., Tong, Zhen Wei Marcus, Chew, Keng Yih, Short, Kirsty R., Le Grand, Roger, Seddiki, Nabila and Rao, Sudha (2023). In vivo inhibition of nuclear ACE2 translocation protects against SARS-CoV-2 replication and lung damage through epigenetic imprinting. Nature Communications, 14 (1) 3680, 3680. doi: 10.1038/s41467-023-39341-4 |
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2023 Journal Article SARS-CoV-2 infection and viral fusogens cause neuronal and glial fusion that compromises neuronal activityMartínez-Mármol, Ramón, Giordano-Santini, Rosina, Kaulich, Eva, Cho, Ann-Na, Przybyla, Magdalena, Riyadh, Md Asrafuzzaman, Robinson, Emilija, Chew, Keng Yih, Amor, Rumelo, Meunier, Frédéric A., Balistreri, Giuseppe, Short, Kirsty R., Ke, Yazi D., Ittner, Lars M. and Hilliard, Massimo A. (2023). SARS-CoV-2 infection and viral fusogens cause neuronal and glial fusion that compromises neuronal activity. Science Advances, 9 (23) eadg2248, 1-15. doi: 10.1126/sciadv.adg2248 |
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2023 Journal Article Assessing the potential for fomite transmission of SARS-CoV-2Short, Kirsty R. and Cowling, Benjamin J. (2023). Assessing the potential for fomite transmission of SARS-CoV-2. The Lancet Microbe, 4 (6), e380-e381. doi: 10.1016/s2666-5247(23)00099-x |
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2023 Journal Article Severe respiratory viral infections: T-cell functions diverging from immunity to inflammationYunis, Joseph, Short, Kirsty R. and Yu, Di (2023). Severe respiratory viral infections: T-cell functions diverging from immunity to inflammation. Trends in Microbiology, 31 (6), 644-656. doi: 10.1016/j.tim.2022.12.008 |
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2023 Journal Article Long COVIDShort, Kirsty R. (2023). Long COVID. Microbiology Australia, 44 (2), 113-114. doi: 10.1071/ma23032 |
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2023 Journal Article The role of children in transmission of SARS-CoV-2 variants of concern within households: an updated systematic review and meta-analysis, as at 30 June 2022Zhu, Yanshan, Xia, Yao, Pickering, Janessa, Bowen, Asha C. and Short, Kirsty R. (2023). The role of children in transmission of SARS-CoV-2 variants of concern within households: an updated systematic review and meta-analysis, as at 30 June 2022. Eurosurveillance, 28 (18) 2200624, 1-17. doi: 10.2807/1560-7917.ES.2023.28.18.2200624 |
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2023 Journal Article Macrophage ACE2 is necessary for SARS-CoV-2 replication and subsequent cytokine responses that restrict continued virion releaseLabzin, Larisa I., Chew, Keng Yih, Eschke, Kathrin, Wang, Xiaohui, Esposito, Tyron, Stocks, Claudia J., Rae, James, Patrick, Ralph, Mostafavi, Helen, Hill, Brittany, Yordanov, Teodor E., Holley, Caroline L., Emming, Stefan, Fritzlar, Svenja, Mordant, Francesca L., Steinfort, Daniel P., Subbarao, Kanta, Nefzger, Christian M., Lagendijk, Anne K., Gordon, Emma J., Parton, Robert G., Short, Kirsty R., Londrigan, Sarah L. and Schroder, Kate (2023). Macrophage ACE2 is necessary for SARS-CoV-2 replication and subsequent cytokine responses that restrict continued virion release. Science Signaling, 16 (782) eabq1366, eabq1366. doi: 10.1126/scisignal.abq1366 |
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2023 Journal Article Environmentally persistent free radicals enhance SARS-CoV-2 replication in respiratory epitheliumYamamoto, Ayaho, Sly, Peter D., Chew, Keng Yih, Khachatryan, Lavrent, Begum, Nelufa, Yeo, Abrey J., Vu, Luan D, Short, Kirsty R., Cormier, Stephania A and Fantino, Emmanuelle (2023). Environmentally persistent free radicals enhance SARS-CoV-2 replication in respiratory epithelium. Experimental Biology and Medicine, 248 (3), 271-279. doi: 10.1177/15353702221142616 |
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2023 Journal Article Pathway and network analyses identify growth factor signaling and MMP9 as potential mediators of mitochondrial dysfunction in severe COVID-19Wang, Ya, Schughart, Klaus, Pelaia, Tiana Maria, Chew, Tracy, Kim, Karan, Karvunidis, Thomas, Knippenberg, Ben, Teoh, Sally, Phu, Amy L., Short, Kirsty R., Iredell, Jonathan, Thevarajan, Irani, Audsley, Jennifer, Macdonald, Stephen, Burcham, Jonathon, Tang, Benjamin, McLean, Anthony, Shojaei, Maryam and PREDICT-19 Consortium (2023). Pathway and network analyses identify growth factor signaling and MMP9 as potential mediators of mitochondrial dysfunction in severe COVID-19. International Journal of Molecular Sciences, 24 (3) 2524, 1-18. doi: 10.3390/ijms24032524 |
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2023 Journal Article The swan genome and transcriptome, it is not all black and whiteKarawita, Anjana C., Cheng, Yuanyuan, Chew, Keng Yih, Challagulla, Arjun, Kraus, Robert, Mueller, Ralf C., Tong, Marcus Z. W., Hulme, Katina D., Bielefeldt-Ohmann, Helle, Steele, Lauren E., Wu, Melanie, Sng, Julian, Noye, Ellesandra, Bruxner, Timothy J., Au, Gough G., Lowther, Suzanne, Blommaert, Julie, Suh, Alexander, McCauley, Alexander J., Kaur, Parwinder, Dudchenko, Olga, Aiden, Erez, Fedrigo, Olivier, Formenti, Giulio, Mountcastle, Jacquelyn, Chow, William, Martin, Fergal J., Ogeh, Denye N., Thiaud-Nissen, Françoise ... Short, Kirsty R. (2023). The swan genome and transcriptome, it is not all black and white. Genome Biology, 24 (1) 13, 1-24. doi: 10.1186/s13059-022-02838-0 |
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2023 Journal Article Blood transcriptome responses in patients correlate with severity of COVID-19 diseaseWang, Ya, Schughart, Klaus, Pelaia, Tiana Maria, Chew, Tracy, Kim, Karan, Karvunidis, Thomas, Knippenberg, Ben, Teoh, Sally, Phu, Amy L., Short, Kirsty R., Iredell, Jonathan, Thevarajan, Irani, Audsley, Jennifer, Macdonald, Stephen, Burcham, Jonathon, McLean, Anthony, Tang, Benjamin, Shojaei, Maryam, PREDICT-19 consortium, Kulasinghe, Arutha and Carney, Meagan E. (2023). Blood transcriptome responses in patients correlate with severity of COVID-19 disease. Frontiers in Immunology, 13 1043219, 1-18. doi: 10.3389/fimmu.2022.1043219 |
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2023 Journal Article IFI27 transcription is an early predictor for COVID-19 outcomes, a multi-cohort observational studyShojaei, Maryam, Shamshirian, Amir, Monkman, James, Grice, Laura, Tran, Minh, Tan, Chin Wee, Teo, Siok Min, Rodrigues Rossi, Gustavo, McCulloch, Timothy R., Nalos, Marek, Raei, Maedeh, Razavi, Alireza, Ghasemian, Roya, Gheibi, Mobina, Roozbeh, Fatemeh, Sly, Peter D., Spann, Kirsten M., Chew, Keng Yih, Zhu, Yanshan, Xia, Yao, Wells, Timothy J., Senegaglia, Alexandra Cristina, Kuniyoshi, Carmen Lúcia, Franck, Claudio Luciano, dos Santos, Anna Flavia Ribeiro, Noronha, Lucia de, Motamen, Sepideh, Valadan, Reza, Amjadi, Omolbanin ... Tang, Benjamin (2023). IFI27 transcription is an early predictor for COVID-19 outcomes, a multi-cohort observational study. Frontiers in Immunology, 13 1060438, 1-14. doi: 10.3389/fimmu.2022.1060438 |
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2023 Journal Article GPR183 antagonism reduces macrophage infiltration in influenza and SARS-CoV-2 infectionFoo, Cheng Xiang, Bartlett, Stacey, Chew, Keng Yih, Ngo, Minh Dao, Bielefeldt-Ohmann, Helle, Jayakody Arachchige, Buddhika, Matthews, Benjamin, Reed, Sarah, Wang, Ran, Smith, Christian, Sweet, Matthew J., Burr, Lucy, Bisht, Kavita, Shatunova, Svetlana, Sinclair, Jane E., Parry, Rhys, Yang, Yuanhao, Lévesque, Jean-Pierre, Khromykh, Alexander, Rosenkilde, Mette Marie, Short, Kirsty R. and Ronacher, Katharina (2023). GPR183 antagonism reduces macrophage infiltration in influenza and SARS-CoV-2 infection. European Respiratory Journal, 61 (3) 2201306, 1-15. doi: 10.1183/13993003.01306-2022 |
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2022 Journal Article Emulation of epidemics via Bluetooth-based virtual safe virus spread: Experimental setup, software, and dataAsanjarani, Azam, Shausan, Aminath, Chew, Keng, Graham, Thomas, Henderson, Shane G., Jansen, Hermanus M., Short, Kirsty R., Taylor, Peter G., Vuorinen, Aapeli, Yadav, Yuvraj, Ziedins, Ilze and Nazarathy, Yoni (2022). Emulation of epidemics via Bluetooth-based virtual safe virus spread: Experimental setup, software, and data. PLoS Digital Health, 1 (12) e0000142, 1-23. doi: 10.1371/journal.pdig.0000142 |
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2022 Journal Article High–temporal resolution profiling reveals distinct immune trajectories following the first and second doses of COVID-19 mRNA vaccinesRinchai, Darawan, Deola, Sara, Zoppoli, Gabriele, Kabeer, Basirudeen Syed Ahamed, Taleb, Sara, Pavlovski, Igor, Maacha, Selma, Gentilcore, Giusy, Toufiq, Mohammed, Mathew, Lisa, Liu, Li, Vempalli, Fazulur Rehaman, Mubarak, Ghada, Lorenz, Stephan, Sivieri, Irene, Cirmena, Gabriella, Dentone, Chiara, Cuccarolo, Paola, Giacobbe, Daniele Roberto, Baldi, Federico, Garbarino, Alberto, Cigolini, Benedetta, Cremonesi, Paolo, Bedognetti, Michele, Ballestrero, Alberto, Bassetti, Matteo, Hejblum, Boris P., Augustine, Tracy, Van Panhuys, Nicholas ... PREDICT-19 Consortium (2022). High–temporal resolution profiling reveals distinct immune trajectories following the first and second doses of COVID-19 mRNA vaccines. Science Advances, 8 (45) eabp9961, 1-24. doi: 10.1126/sciadv.abp9961 |
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2022 Journal Article Ablation of CD8+ T cell recognition of an immunodominant epitope in SARS-CoV-2 Omicron variants BA.1, BA.2 and BA.3Swaminathan, Srividhya, Lineburg, Katie E., Panikkar, Archana, Raju, Jyothy, Murdolo, Lawton D., Szeto, Christopher, Crooks, Pauline, Le Texier, Laetitia, Rehan, Sweera, Dewar-Oldis, Michael J., Barnard, Peter J., Ambalathingal, George R., Neller, Michelle A., Short, Kirsty R., Gras, Stephanie, Khanna, Rajiv and Smith, Corey (2022). Ablation of CD8+ T cell recognition of an immunodominant epitope in SARS-CoV-2 Omicron variants BA.1, BA.2 and BA.3. Nature Communications, 13 (1) 6387, 1-6. doi: 10.1038/s41467-022-34180-1 |
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2022 Journal Article Transcriptomic profiling of cardiac tissues from SARS‐CoV ‐2 patients identifies DNA damageKulasinghe, Arutha, Liu, Ning, Tan, Chin Wee, Monkman, James, Sinclair, Jane E., Bhuva, Dharmesh D., Godbolt, David, Pan, Liuliu, Nam, Andy, Sadeghirad, Habib, Sato, Kei, Bassi, Gianluigi Li, O'Byrne, Ken, Hartmann, Camila, Miggiolaro, Anna Flavia Ribeiro dos Santos, Marques, Gustavo Lenci, Moura, Lidia Zytynski, Richard, Derek, Adams, Mark, Noronha, Lucia de, Baena, Cristina Pellegrino, Suen, Jacky Y., Arora, Rakesh, Belz, Gabrielle T., Short, Kirsty R., Davis, Melissa J., Souza‐Fonseca Guimaraes, Fernando and Fraser, John F. (2022). Transcriptomic profiling of cardiac tissues from SARS‐CoV ‐2 patients identifies DNA damage. Immunology, 168 (3), 403-419. doi: 10.1111/imm.13577 |
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2022 Journal Article Developing an antiviral surface cleaner utilising unique surface adsorption properties of hydroxyproline-rich-proteinsShewan, Heather M. , Siauw, Meiliana , Vinden, Naomi , Dong, Anran , Beheshti, Amir , Chew, Keng Yih, Stokes, Jason R. , Short, Kirsty R., Mikkelsen, Deirdre, Koehler, Berthold and Reihmann, Matthias (2022). Developing an antiviral surface cleaner utilising unique surface adsorption properties of hydroxyproline-rich-proteins. Household and Personal Care Today, 17 (5), 57-61. |
