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2023 Other Outputs Host transcriptomics and machine learning for bacterial infections in patients with COVID-19: a prospective cohort studyMeagan Carney and Kirsty Short (2023). Host transcriptomics and machine learning for bacterial infections in patients with COVID-19: a prospective cohort study. The University of Queensland. (Dataset) doi: 10.48610/a641795 |
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2022 Other Outputs Emulation of epidemics via Bluetooth-based virtual safe virus spread: experimental setup, software, and dataAsanjarani, Azam, Shausan, Aminath, Chew, Keng, Graham, Thomas, Henderson, Shane G., Jansen, Hermanus M., Short, Kirsty R., Taylor, Peter G., Vuorinen, Aapeli, Yadav, Yuvraj, Ziedins, Ilze and Nazarathy, Yoni (2022). Emulation of epidemics via Bluetooth-based virtual safe virus spread: experimental setup, software, and data. |
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2022 Other Outputs Short-read next generation DNA sequencing of Black swan AKBS03Karawita, Anjana, Short, Kirsty, Karawita, Anjana Chamal and Bruxner, Tim (2022). Short-read next generation DNA sequencing of Black swan AKBS03. The University of Queensland. (Dataset) doi: 10.48610/f6ba161 |
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2022 Other Outputs Avian endothelial cells - RNAseq data (Public)Karawita, Anjana, Short, Kirsty, Karawita, Anjana Chamal and Bruxner, Tim (2022). Avian endothelial cells - RNAseq data (Public). The University of Queensland. (Dataset) doi: 10.48610/58a568b |
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2021 Other Outputs High temporal resolution systems profiling reveals distinct patterns of interferon response after Covid-19 mRNA vaccination and SARS-CoV2 infectionRinchai, Darawan, Deola, Sara, Zoppoli, Gabriele, Kabeer, Basirudeen Syed Ahamed, Taleb, Sara, Pavlovski, Igor, Maacha, Selma, Gentilcore, Giusy, Toufiq, Mohammed, Mathew, Lisa, Liu, Li, Vempalli, Fazulur Rehaman, Mubarak, Ghada, Lorenz, Stephan, Sivieri, Irene, Cirmena, Gabriella, Dentone, Chiara, Cuccarolo, Paola, Giacobbe, Daniele Roberto, Baldi, Federico, Garbarino, Alberto, Cigolini, Benedetta, Cremonesi, Paolo, Bedognetti, Michele, Ballestrero, Alberto, Bassetti, Matteo, Hejblum, Boris P., Augustine, Tracy, Van Panhuys, Nicholas ... Chaussabel, Damien (2021). High temporal resolution systems profiling reveals distinct patterns of interferon response after Covid-19 mRNA vaccination and SARS-CoV2 infection. doi: 10.1101/2021.12.12.472257 |
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2021 Other Outputs IFI27 transcription is an early predictor for COVID-19 outcomes; a multi-cohort observational studyShojaei, Maryam, Shamshirian, Amir, Monkman, James, Grice, Laura, Tran, Minh, Tan, Chin Wee, Rossi, Gustavo Rodrigues, McCulloch, Timothy R., Nalos, Marek, Chew, Keng Yih, Zhu, Yanshan, Xia, Yao, Wells, Timothy J., Senegaglia, Alexandra Cristina, Rebelatto, Carmen Lúcia Kuniyoshi, Franck, Claudio Luciano, dos Santos, Anna Flavia Ribeiro, de Noronha, Lucia, Motamen, Sepideh, Valadan, Reza, Amjadi, Omolbanin, Gogna, Rajan, Madan, Esha, Alizadeh-Navaei, Reza, Lamperti, Liliana, Zuñiga, Felipe, Nova-Lamperti, Estefania, Labarca, Gonzalo, Knippenberg, Ben ... Tang, Benjamin (2021). IFI27 transcription is an early predictor for COVID-19 outcomes; a multi-cohort observational study. doi: 10.1101/2021.10.29.21265555 |
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2021 Other Outputs Designing an evidence-based Bayesian network for estimating the risk versus benefits of AstraZeneca COVID-19 vaccineMayfield, Helen J., Lau, Colleen L., Sinclair, Jane E., Brown, Samuel J., Baird, Andrew, Litt, John, Vuorinen, Aapeli, Short, Kirsty R., Waller, Michael and Mengersen, Kerrie (2021). Designing an evidence-based Bayesian network for estimating the risk versus benefits of AstraZeneca COVID-19 vaccine. doi: 10.1101/2021.10.28.21265588 |
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2021 Other Outputs Low antigen abundance limits efficient T-cell recognition of highly conserved regions of SARS-CoV-2Swaminathan, Srividhya, Lineburg, Katie E., Ambalathingal, George R., Crooks, Pauline, Grant, Emma J., Mohan, Sonali V, Raju, Jyothy, Panikkar, Archana, Le Texier, Laetitia, Tong, Zheng Wei Marcus, Chew, Keng Yih, Neller, Michelle A., Short, Kirsty R., Gowda, Harsha, Gras, Stephanie, Khanna, Rajiv and Smith, Corey (2021). Low antigen abundance limits efficient T-cell recognition of highly conserved regions of SARS-CoV-2. doi: 10.1101/2021.10.13.464181 |
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2021 Other Outputs Risk-benefit analysis of the AstraZeneca COVID-19 vaccine in Australia using a Bayesian network modelling frameworkLau, Colleen L, Mayfield, Helen J, Sinclair, Jane E, Brown, Samuel J, Waller, Michael, Enjeti, Anoop K, Baird, Andrew, Short, Kirsty, Mengersen, Kerrie and Litt, John (2021). Risk-benefit analysis of the AstraZeneca COVID-19 vaccine in Australia using a Bayesian network modelling framework. doi: 10.1101/2021.09.30.21264337 |
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2021 Other Outputs Postnatal inflammation in Apoe−/− mice is associated with immune training and atherosclerosisNoye, Ellesandra C., Bekkering, Siroon, Limawan, Albert P., Nguyen, Maria U., Widiasmoko, Lisa K., Lu, Hui, Pepe, Salvatore, Cheung, Michael M., Menheniott, Trevelyan R., Wallace, Megan J, Moss, Timothy J., Burgner, David P. and Short, Kirsty R. (2021). Postnatal inflammation in Apoe−/− mice is associated with immune training and atherosclerosis. doi: 10.1101/2021.04.14.439403 |
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2021 Other Outputs Pre-diabetes increases tuberculosis disease severity, while high body fat without impaired glucose tolerance is protectiveSinha, Roma, Ngo, Minh Dao, Bartlett, Stacey, Bielefeldt-Ohmann, Helle, Keshvari, Sahar, Hasnain, Sumaira Z., Donovan, Meg L., Kling, Jessica C., Blumenthal, Antje, Chen, Chen, Short, Kirsty R. and Ronacher, Katharina (2021). Pre-diabetes increases tuberculosis disease severity, while high body fat without impaired glucose tolerance is protective. doi: 10.1101/2021.04.06.438735 |
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2021 Other Outputs Pediatric nasal epithelial cells are less permissive to SARS-CoV-2 replication compared to adult cellsZhu, Yanshan, Chew, Keng Yih, Wu, Melanie, Karawita, Anjana C., McCallum, Georgina, Steele, Lauren E, Yamamoto, Ayaho, Labzin, Larisa L., Yarlagadda, Tejasri, Khromykh, Alexander A., Wang, Xiaohui, Sng, Julian, Stocks, Claudia J., Xia, Yao, Kollmann, Tobias R., Martino, David, Joensuu, Merja, Meunier, Frédéric A., Balistreri, Giuseppe, Bielefeldt-Ohmann, Helle, Bowen, Asha C., Kicic, Anthony, Sly, Peter D., Spann, Kirsten M. and Short, Kirsty R. (2021). Pediatric nasal epithelial cells are less permissive to SARS-CoV-2 replication compared to adult cells. doi: 10.1101/2021.03.08.434300 |
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2021 Other Outputs Endothelial cells elicit a pro-inflammatory response to SARS-CoV-2 without productive viral infectionSchimmel, Lilian, Chew, Keng Yih, Stocks, Claudia, Yordanov, Teodor, Essebier, Patricia, Kulasinghe, Arutha, Monkman, James, dos Santos Miggiolaro, Anna Flavia Ribeiro, Cooper, Caroline, de Noronha, Lucia, Lagendijk, Anne K., Schroder, Kate, Labzin, Larisa I., Gordon, Emma J. and Short, Kirsty R. (2021). Endothelial cells elicit a pro-inflammatory response to SARS-CoV-2 without productive viral infection. doi: 10.1101/2021.02.14.431177 |
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2021 Other Outputs Pre-Existing Cellular Immunity to SARS-CoV-2 Through an Immunodominant EpitopeLineburg, Katie E., Grant, Emma J., Swaminathan, Srividhya, Chatzileontiadou, Demetra S.M., Szeto, Christopher, Sloane, Hannah, Panikkar, Archana, Raju, Jyothy, Crooks, Pauline, Rehan, Sweera, Nguyen, Andrea, Lekieffre, Lea, Neller, Michelle A., Tong, Zhen Wei Marcus, Jayasinghe, Dhilshan, Chew, Keng Yih, Lobos, Christian A., Halim, Hanim, Burrows, Jacqueline M., Riboldi-Tunnicliffe, Alan, Chen, Weisan, D'Orsogna, Lloyd, Khanna, Rajiv, Short, Kirsty R., Smith, Corey and Gras, Stephanie (2021). Pre-Existing Cellular Immunity to SARS-CoV-2 Through an Immunodominant Epitope. doi: 10.2139/ssrn.3774361 |
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2021 Other Outputs Mute swan ISOseq dataKarawita, Anjana, Short, Kirsty and Karawita, Anjana Chamal (2021). Mute swan ISOseq data. The University of Queensland. (Dataset) doi: 10.48610/afb4f31 |
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2020 Other Outputs Spatial Profiling of Lung SARS-CoV-2 and Influenza Virus Infection Dissects Virus-Specific Host Responses and Gene SignaturesKulasinghe, Arutha, Tan, Chin Wee, dos Santos Miggiolaro, Anna Flavia Ribeiro, Monkman, James, Bhuva, Dharmesh, da Silva Motta, Jarbas, de Paula, Caroline Busatta Vaz, Nagashima, Seigo, Baena, Cristina Pellegrino, Souza-Fonseca-Guimaraes, Paulo, de Noronha, Lucia, McCulloch, Timothy, Rossi, Gustavo Rodrigues, Cooper, Caroline, Tang, Benjamin, Short, Kirsty R., Davis, Melissa J, Souza-Fonseca-Guimaraes, Fernando, Belz, Gabrielle T. and O’Byrne, Ken (2020). Spatial Profiling of Lung SARS-CoV-2 and Influenza Virus Infection Dissects Virus-Specific Host Responses and Gene Signatures. doi: 10.1101/2020.11.04.20225557 |
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2020 Other Outputs The role of pre-existing chronic disease in cardiac complications from SARS-CoV-2 infection: A systematic review and meta-analysisSinclair, Jane E., Zhu, Yanshan, Xu, Gang, Ma, Wei, Shi, Haiyan, Ma, Kun-Long, Cao, Chun-Feng, Kong, Ling-Xi, Wan, Ke-Qiang, Liao, Juan, Wang, Hai-Qiang, Arentz, Matt, Redd, Meredith, Gallo, Linda A. and Short, Kirsty R. (2020). The role of pre-existing chronic disease in cardiac complications from SARS-CoV-2 infection: A systematic review and meta-analysis. doi: 10.1101/2020.06.21.20136622 |
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2020 Other Outputs A meta-analysis on the role of children in SARS-CoV-2 in household transmission clustersZhu, Yanshan, Bloxham, Conor J., Hulme, Katina D., Sinclair, Jane E., Tong, Zhen Wei Marcus, Steele, Lauren E., Noye, Ellesandra C., Lu, Jiahai, Xia, Yao, Chew, Keng Yih, Pickering, Janessa, Gilks, Charles, Bowen, Asha C. and Short, Kirsty R (2020). A meta-analysis on the role of children in SARS-CoV-2 in household transmission clusters. doi: 10.1101/2020.03.26.20044826 |
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2020 Other Outputs Children Are Unlikely to Have Been the Primary Source of Household SARS-CoV-2 InfectionsZhu, Yanshan, Bloxham, Conor J., Hulme, Katina D., Sinclair, Jane E., Tong, Zhen Wei Marcus, Steele, Lauren E., Noye, Ellesandra C., Lu, Jiahai, Chew, Keng Yih, Pickering, Janessa, Gilks, Charles, Bowen, Asha C. and Short, Kirsty R. (2020). Children Are Unlikely to Have Been the Primary Source of Household SARS-CoV-2 Infections. doi: 10.2139/ssrn.3564428 |
