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2025 Journal Article Obesity Is a Risk Factor for Severe Influenza Virus Infection and COVID-19 in ChildrenNoye, Ellesandra C, Bekkering, Siroon, Sng, Julian D J, Burgner, David, Longmore, Danielle K and Short, Kirsty R (2025). Obesity Is a Risk Factor for Severe Influenza Virus Infection and COVID-19 in Children. Journal of the Pediatric Infectious Diseases Society, 14 (1) piae123, 1. doi: 10.1093/jpids/piae123 |
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2024 Journal Article Modulation of endoplasmic reticulum stress response pathways by respiratory virusesMacauslane, Kyle L., Pegg, Cassandra L., Short, Kirsty R. and Schulz, Benjamin L. (2024). Modulation of endoplasmic reticulum stress response pathways by respiratory viruses. Critical Reviews in Microbiology, 50 (5), 750-768. doi: 10.1080/1040841x.2023.2274840 |
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2024 Journal Article An analytical, numerical and experimental study of in-vitro SARS-CoV-2 evolution in Vero B4 cellsNicol, Matthew, Sng, Julian D.J., Zhu, Yanshan, Sonnleitner, Sissy Therese, Short, Kirsty R. and Carney, Meagan (2024). An analytical, numerical and experimental study of in-vitro SARS-CoV-2 evolution in Vero B4 cells. Journal of Theoretical Biology, 598 112000, 112000. doi: 10.1016/j.jtbi.2024.112000 |
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2024 Journal Article Post-acute sequelae of SARS-CoV-2 cardiovascular symptoms are associated with trace-level cytokines that affect cardiomyocyte functionSinclair, Jane E., Vedelago, Courtney, Ryan, Feargal J., Carney, Meagan, Redd, Meredith A., Lynn, Miriam A., Grubor-Bauk, Branka, Cao, Yuanzhao, Henders, Anjali K., Chew, Keng Yih, Gilroy, Deborah, Greaves, Kim, Labzin, Larisa, Ziser, Laura, Ronacher, Katharina, Wallace, Leanne M., Zhang, Yiwen, Macauslane, Kyle, Ellis, Daniel J., Rao, Sudha, Burr, Lucy, Bain, Amanda, Karawita, Anjana, Schulz, Benjamin L., Li, Junrong, Lynn, David J., Palpant, Nathan, Wuethrich, Alain, Trau, Matt and Short, Kirsty R. (2024). Post-acute sequelae of SARS-CoV-2 cardiovascular symptoms are associated with trace-level cytokines that affect cardiomyocyte function. Nature Microbiology, 9 (12), 1-13. doi: 10.1038/s41564-024-01838-z |
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2024 Journal Article Persistent viral RNA and protein contribute to post-acute pathologyChew, Keng Yih and Short, Kirsty R. (2024). Persistent viral RNA and protein contribute to post-acute pathology. Nature Microbiology, 9 (11), 2797-2798. doi: 10.1038/s41564-024-01837-0 |
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2024 Journal Article High-throughput synthesis and evaluation of antiviral copolymers for enveloped respiratory virusesMengist, Hylemariam Mihiretie, Denman, Paul, Frost, Charlotte, Sng, Julian D.J., Logan, Saskia, Yarlagadda, Tejasri, Spann, Kirsten M., Barner, Leonie, Fairfull-Smith, Kathryn E, Short, Kirsty R. and Boase, Nathan RB (2024). High-throughput synthesis and evaluation of antiviral copolymers for enveloped respiratory viruses. Biomacromolecules, 25 (11), 7377-7391. doi: 10.1021/acs.biomac.4c01049 |
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2024 Journal Article High glycaemic variability is associated with a reduced T cell cytokine response to influenza A virusZhen Wei, Marcus Tong, Hulme, Katina D., Law, Soi Cheng, Noye, Ellesandra, Dorey, Emily S., Chew, Keng Yih, Rowntree, Louise C., van de Sandt, Carolien E., Kedzierska, Katherine, Goeijenbier, Marco, Ronacher, Katharina, Alzaid, Fawaz, Julla, Jean-Baptiste, Riveline, Jean-Pierre, Lineburg, Katie, Smith, Corey, Grant, Emma J., Gras, Stephanie, Gallo, Linda A., Barett, Helen L. and Short, Kirsty R. (2024). High glycaemic variability is associated with a reduced T cell cytokine response to influenza A virus. iScience, 27 (11) 111166, 111166. doi: 10.1016/j.isci.2024.111166 |
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2024 Journal Article High pathogenicity avian influenza in Australia and beyond: could avian influenza cause the next human pandemic?Airey, Megan and Short, Kirsty R. (2024). High pathogenicity avian influenza in Australia and beyond: could avian influenza cause the next human pandemic?. Microbiology Australia, 45 (3), 155-158. doi: 10.1071/MA24040 |
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2024 Journal Article Nasal Delivery of Haemophilus haemolyticus is safe, reduces influenza severity, and prevents development of otitis media in miceScott, Naomi, Martinovich, Kelly M., Granland, Caitlyn M., Seppanen, Elke J., Tjiam, M Christian, de Gier, Camilla, Foo, Edison, Short, Kirsty R., Chew, Keng Yih, Fulurija, Alma, Strickland, Deborah H., Richmond, Peter C. and Kirkham, Lea-Ann S. (2024). Nasal Delivery of Haemophilus haemolyticus is safe, reduces influenza severity, and prevents development of otitis media in mice. The Journal of Infectious Diseases, 230 (2), 346-356. doi: 10.1093/infdis/jiae069 |
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2024 Journal Article Evidence for vagal sensory neural involvement in influenza pathogenesis and diseaseVerzele, Nathalie A. J., Chua, Brendon Y., Short, Kirsty R., Moe, Aung Aung Kywe, Edwards, Isaac N., Bielefeldt-Ohmann, Helle, Hulme, Katina D., Noye, Ellesandra C., Tong, Marcus Z. W., Reading, Patrick C., Trewella, Matthew W., Mazzone, Stuart B. and McGovern, Alice E. (2024). Evidence for vagal sensory neural involvement in influenza pathogenesis and disease. PLoS Pathogens, 20 (4) e1011635, e1011635. doi: 10.1371/journal.ppat.1011635 |
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2024 Journal Article In situ single-cell profiling sheds light on IFI27 localisation during SARS-CoV-2 infectionTan, Chin Wee, Chen, Jinjin, Liu, Ning, Bhuva, Dharmesh D., Blick, Tony, Monkman, James, Cooper, Caroline, Kharbanda, Malvika, Feher, Kristen, Phipson, Belinda, Killingbeck, Emily E., Pan, Liuliu, Kim, Youngmi, Liang, Yan, Nam, Andy, Leon, Michael, Souza-Fonseca-Guimaraes, Paulo, Nagashima, Seigo, Camargo Martins, Ana Paula, Machado-Souza, Cleber, de Noronha, Lucia, Tang, Benjamin, Short, Kirsty, Fraser, John, Belz, Gabrielle T., Souza-Fonseca-Guimaraes, Fernando, Kulasinghe, Arutha and Davis, Melissa J. (2024). In situ single-cell profiling sheds light on IFI27 localisation during SARS-CoV-2 infection. eBioMedicine, 101 105016, 1-4. doi: 10.1016/j.ebiom.2024.105016 |
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2024 Journal Article Whole transcriptome profiling of placental pathobiology in SARS‐CoV‐2 pregnancies identifies placental dysfunction signaturesStylianou, Nataly, Sebina, Ismail, Matigian, Nicholas, Monkman, James, Doehler, Hadeel, Röhl, Joan, Allenby, Mark, Nam, Andy, Pan, Liuliu, Rockstroh, Anja, Sadeghirad, Habib, Chung, Kimberly, Sobanski, Thais, O'Byrne, Ken, Almeida, Ana Clara Simoes Florido, Rebutini, Patricia Zadorosnei, Machado‐Souza, Cleber, Stonoga, Emanuele Therezinha Schueda, Warkiani, Majid E, Salomon, Carlos, Short, Kirsty, McClements, Lana, de Noronha, Lucia, Huang, Ruby, Belz, Gabrielle T, Souza‐Fonseca‐Guimaraes, Fernando, Clifton, Vicki and Kulasinghe, Arutha (2024). Whole transcriptome profiling of placental pathobiology in SARS‐CoV‐2 pregnancies identifies placental dysfunction signatures. Clinical and Translational Immunology, 13 (2) e1488, e1488. doi: 10.1002/cti2.1488 |
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2024 Journal Article Presence of procoagulant peripheral blood mononuclear cells in severe COVID-19 patients relate to ventilation perfusion mismatch and precede pulmonary embolismRaadsen, M., Langerak, T., Du Toit, J., Kruip, M. J.H.A., Aynekulu Mersha, D., De Maat, M. P.M., Vermin, B., Van den Akker, J. P.C., Schmitz, K. S., Bakhtiari, K., Meijers, J. C.M., van Gorp, E. C.M., Short, K. R., Haagmans, B., de Vries, R. D., Gommers, D. A.M.P.J., Endeman, H. and Goeijenbier, M. (2024). Presence of procoagulant peripheral blood mononuclear cells in severe COVID-19 patients relate to ventilation perfusion mismatch and precede pulmonary embolism. Journal of Critical Care, 79 154463. doi: 10.1016/j.jcrc.2023.154463 |
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2024 Journal Article Host transcriptomics and machine learning for secondary bacterial infections in patients with COVID-19: a prospective, observational cohort studyCarney, Meagan, Pelaia, Tiana Maria, Chew, Tracy, Teoh, Sally, Phu, Amy, Kim, Karan, Wang, Ya, Iredell, Jonathan, Zerbib, Yoann, McLean, Anthony, Schughart, Klaus, Tang, Benjamin, Shojaei, Maryam, Short, Kirsty R, PREDICT-19 consortium and Kulasinghe, Arutha (PREDICT-19 consortium member) (2024). Host transcriptomics and machine learning for secondary bacterial infections in patients with COVID-19: a prospective, observational cohort study. The Lancet Microbe, 5 (3), e272-e281. doi: 10.1016/S2666-5247(23)00363-4 |
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2024 Journal Article Increasing HbA1c is associated with reduced CD8+ T cell functionality in response to influenza virus in a TCR-dependent manner in individuals with diabetes mellitusHulme, Katina D., Tong, Zhen Wei Marcus, Rowntree, Louise C., van de Sandt, Carolien E., Ronacher, Katharina, Grant, Emma J., Dorey, Emily S., Gallo, Linda A., Gras, Stephanie, Kedzierska, Katherine, Barrett, Helen L. and Short, Kirsty R. (2024). Increasing HbA1c is associated with reduced CD8+ T cell functionality in response to influenza virus in a TCR-dependent manner in individuals with diabetes mellitus. Cellular and Molecular Life Sciences, 81 (1) 35. doi: 10.1007/s00018-023-05010-4 |
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2024 Journal Article Cardiac human bitter taste receptors contain naturally occurring variants that alter functionBloxham, Conor J., Hulme, Katina D., Fierro, Fabrizio, Fercher, Christian, Pegg, Cassandra L., O'Brien, Shannon L., Foster, Simon R., Short, Kirsty R., Furness, Sebastian G. B., Reichelt, Melissa E., Niv, Masha Y. and Thomas, Walter G. (2024). Cardiac human bitter taste receptors contain naturally occurring variants that alter function. Biochemical Pharmacology, 219 115932, 115932. doi: 10.1016/j.bcp.2023.115932 |
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2023 Journal Article Elevated BMI reduces the humoral response to SARS‐CoV‐2 infectionTong, Marcus Z. W., Sng, Julian D. J., Carney, Meagan, Cooper, Lucy, Brown, Samuel, Lineburg, Katie E., Chew, Keng Yih, Collins, Neve, Ignacio, Kirsten, Airey, Megan, Burr, Lucy, Joyce, Briony A., Jayasinghe, Dhilshan, McMillan, Christopher L. D., Muller, David A., Adhikari, Anurag, Gallo, Linda A., Dorey, Emily S., Barrett, Helen L., Gras, Stephanie, Smith, Corey, Good‐Jacobson, Kim and Short, Kirsty R. (2023). Elevated BMI reduces the humoral response to SARS‐CoV‐2 infection. Clinical and Translational Immunology, 12 (12) e1476, 1-13. doi: 10.1002/cti2.1476 |
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2023 Journal Article Genomic communication via circulating extracellular vesicles and long-term health consequences of COVID-19Nair, Soumyalekshmi, Nova-Lamperti, Estefania, Labarca, Gonzalo, Kulasinghe, Arutha, Short, Kirsty R., Carrión, Flavio and Salomon, Carlos (2023). Genomic communication via circulating extracellular vesicles and long-term health consequences of COVID-19. Journal of Translational Medicine, 21 (1) 709, 1-19. doi: 10.1186/s12967-023-04552-2 |
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2023 Journal Article International pediatric COVID-19 severity over the course of the pandemicZhu, Yanshan, Almeida, Flávia Jacqueline, Baillie, J Kenneth, Bowen, Asha C, Britton, Philip N, Brizuela, Martin Eduardo, Buonsenso, Danilo, Burgner, David, Chew, Keng Yih, Chokephaibulkit, Kulkanya, Cohen, Cheryl, Cormier, Stephania A, Crawford, Nigel, Curtis, Nigel, Farias, Camila G A, Gilks, Charles F, von Gottberg, Anne, Hamer, Diana, Jarovsky, Daniel, Jassat, Waasila, Jesus, Ana Rita, Kemp, Lisa S, Khumcha, Benjawan, McCallum, Georgina, Miller, Jessica E, Morello, Rosa, Munro, Alasdair P S, Openshaw, Peter J M, Padmanabhan, Srivatsan ... Short, Kirsty R (2023). International pediatric COVID-19 severity over the course of the pandemic. JAMA Pediatrics, 177 (10), 1073-1084. doi: 10.1001/jamapediatrics.2023.3117 |
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2023 Journal Article A robust platform for integrative spatial multi‐omics analysis to map immune responses to SARS‐CoV‐2 infection in lung tissuesTan, Xiao, Grice, Laura F., Tran, Minh, Mulay, Onkar, Monkman, James, Blick, Tony, Vo, Tuan, Almeida, Ana Clara, da Silva Motta, Jarbas, Fernandes de Moura, Karen, Machado‐Souza, Cleber, Souza‐Fonseca‐Guimaraes, Paulo, Baena, Cristina Pellegrino, de Noronha, Lucia, Guimaraes, Fernanda Simoes Fortes, Luu, Hung N., Drennon, Tingsheng, Williams, Stephen, Stern, Jacob, Uytingco, Cedric, Pan, Liuliu, Nam, Andy, Cooper, Caroline, Short, Kirsty, Belz, Gabrielle T., Souza‐Fonseca‐Guimaraes, Fernando, Kulasinghe, Arutha and Nguyen, Quan (2023). A robust platform for integrative spatial multi‐omics analysis to map immune responses to SARS‐CoV‐2 infection in lung tissues. Immunology, 170 (3), 401-418. doi: 10.1111/imm.13679 |
