
Overview
Background
My PhD, conferred in 2003 by the University of Queensland (UQ), was undertaken under the guidance of Prof. Richard Lewis (IMB), A/Prof. Barry Chiswell (UQ, Chemistry), and Prof. Michael Moore (UQ, ENTOX), on the topic of Ciguatoxins, which are extremely potent site 5 sodium channel activators present in ciguatoxic fish. Their isolation and identification represented a challenging and rewarding PhD. The most innovative aspect of my research was the development of an approach involving radiolabelled receptor binding assays and LC-MS analyses that resulted in the discovery of a new family of ciguatoxins in the Indian ocean.
In 2002, I worked for Dr Kevin James at Cork Institute of Technology (CIT) as a full-time researcher, with responsibility for the maintenance, and training of personnel to use triple quadrupole and quadrupole time-of-flight mass spectrometers. I was also responsible for delivery of an instrumentational analytical chemistry course to undergraduate chemistry students. Whilst at this post I was involved in projects that investigated the fragmentation pathways of a myriad of phycotoxins, mycotoxins, and cyanobacterial toxins using mass spectrometry. These studies resulted in a number of publications in leading discipline journals including the Journal of Mass Spectrometry and Rapid Communications in Mass Spectrometry. The results of these structural studies were then applied to develop sensitive and specific quantitative assays for the routine detection of these compounds resulting in publications in Analytical Chemistry. Many of the assays developed translated to have significant impact on the Irish economy, through their adoption in establishing when it was safe to harvest and sell mussels. Dr James provided an encouraging environment to post-doctoral employees, and whilst there I wrote and submitted a number of successful research grant applications, and a received an Irish Post-Doctoral Fellowship.
In 2006 I moved back to Australia to work for Prof. Jeffrey Gorman at Queensland Institute for Medical Research (QIMR). I was principally recruited to establish a suite of electrospray mass spectrometers within Prof. Gorman’s new laboratory and facilitate proteomic analysis on these systems. At QIMR, Prof Gorman acquired the first LTQ-Orbitrap mass spectrometer in the country, along with the first ion trap equipped fitted with electron-transfer dissociation capabilities.
In 2008, I was recruited by Prof. Deon Venter to the Mater Hospital (in Brisbane), specifically to work for him as a part of the CRC for Biomarker Translation. The CRC project entailed establishing matrix-assisted laser desorption ionisation (MALDI) imaging and proteomics to investigate various breast cancer classes, and ovarian cancer. In collaboration, with Prof. Glenn King, Dr Eivind Undheim and A/Prof. Bryan Fry (U. Queensland), I have been involved with developing protocols to allow MALDI imaging of spider and centipede venom glands. A great deal of effort was involved in producing a suitable fixation approach that preserved the tissue without cross linking the peptides and proteins. Many parts of this work have been published, and presented at numerous conferences. The current optimised protocols allow us to routinely produce MALDI imaging data from serial sections cut from processed spider and centipede samples.
In 2017, I was recruited by Prof. Roger Wepf (UQ, CMM), and Prof. Ian Brereton (UQ, CAI), to come to work at the University of Queensland. As a part of this recruitment the Imaging Mass Spectrometry facility was transferred from the Mater Hospital to CMM/CAI at the University of Queensland (St Lucia campus). The move from the Mater involved relocation of the capabilities from an individual research group into an environment where the facility could be accessed by a much wider user base in accordance with CMM and CAI operating principles. The Imaging Mass Spectrometry facility at UQ can be accessed on a 24 hr/7 day basis for all users who have been trained to use the equipment.
Availability
- Dr Brett Hamilton is:
- Available for supervision
Qualifications
- Bachelor of Science, The University of Queensland
- Bachelor (Honours) of Science (Advanced), The University of Queensland
- Doctor of Philosophy, The University of Queensland
Research impacts
The number of publications since 2002, which include my PhD papers, is 38. My primary interest has been the application of mass spectrometry to various biological problems, most recently in a spatially resolved context. Currently my H index is 21, with an average citation rate of 30 citations per article. During the last 2 years, publications I have been involved with have been cited at a rate of close to 150 citations per year. During the last couple of years more of the projects I have been involved with have been published in higher impact journals such nature communications (DOI: 10.1038/ncomms4521), science advances (DOI: 10.1126/sciadv.aau4640). The work that I performed during my PhD and published in the lower impact journal, Toxicon (DOI: 10.1016/j.toxicon.2009.06.007 and 10.1016/S0041-0101(01)00259-8) are still quite highly cited because the published articles defined a new family of ciguatoxins and the first identification of ciguatoxin in human tissue sample associated with a fatality.
A number of the analytical methods developed at Cork Institute of Technology, under the guidance of Dr Kevin James, are still highly cited. Much of this work was published in journals such as Journal of Chromatography A, Toxicon, Rapid Communications in Mass Spectrometry, Analytical Chemistry, and the International Journal of Mass Spectrometry. Some of the approaches developed are still being used by regulators in Ireland today, allowing in many cases the replacement of mouse bioassay with more specific, targeted and humane methods of routine testing for a variety of analyte classes.
During my time at QIMR a couple of significant papers were published while I worked for Prof Jeffrey Gorman at QIMR, namely the post-translational modification work we undertook using the LTQ-Orbitrap and Ultraflex III looking at the Notch and hypoxia signaling pathways (DOI: 10.1073/pnas.0711591105), and hookworm secreted proteome analysis (DOI: 10.1074/mcp.M800206-MCP200).
During my time at the Mater, working for Prof Deon Venter, much time was spent developing Mass Spectrometry Imaging (MSI). The most cited and impactful work from this time was the cone snail predation and defensive story, which was published in nature communications with PI Lewis (DOI: 10.1038/ncomms4521) and really has changed the paradigm in the cone snail field – especially in the context of deciphering the predatory components from the defensive components. Possibly the most impactful paper we have produced in the IMS field describes how we developed a new sample preparation protocol to enable aldehyde free fixation of delicate venom gland samples, which enabled both the preservation of the samples and the ability to product protein and peptide IMS data. The first paper describing this workflow was published with Dr Eivind Undheim and Prof Glenn King in PNAS (DOI: 10.1073/pnas.1424068112) describing its application the centipede venom glands.
After moving the IMS facility in 2017 from the Mater to the CMM at UQ, I have been facilitating access to the facility in addition to maintaining existing and establishing new collaborations in the Imaging Mass Spectrometry space. Once the facility more functioning after move, I have been activity recruiting researchers to come and use the instruments to assist various research projects. To-date, since late 2017 I have been involved in 7 published articles, with a number more under review or preparation. One of these articles was published in science advances, describing the venom of the giant bullant (Myrmecia gulosa) Sci Adv. 2018 Sep; 4(9): eaau4640. We have a manuscript under review which emanates from a collaboration between myself, Dr Eivind Undheim, CI Blanksby and Dr David Marshall.
Works
Search Professor Brett Hamilton’s works on UQ eSpace
2020
Journal Article
Deadly proteomes: a practical guide to proteotranscriptomics of animal venoms
Walker, Andrew A., Robinson, Samuel D., Hamilton, Brett F., Undheim, Eivind A. B. and King, Glenn F. (2020). Deadly proteomes: a practical guide to proteotranscriptomics of animal venoms. Proteomics, 20 (17-18) 1900324, e1900324. doi: 10.1002/pmic.201900324
2020
Journal Article
Mapping enzyme activity on tissue by functional mass spectrometry imaging
Hamilton, Brett R., Marshall, David L., Casewell, Nicholas R., Harrison, Robert A., Blanksby, Stephen J. and Undheim, Eivind A. B. (2020). Mapping enzyme activity on tissue by functional mass spectrometry imaging. Angewandte Chemie-International Edition, 132 (10) ange.201911390, 3883-3886. doi: 10.1002/anie.201911390
2020
Journal Article
Mapping enzyme activity on tissue by functional mass spectrometry imaging
Hamilton, Brett R., Marshall, David L., Casewell, Nicholas R., Harrison, Robert A., Blanksby, Stephen J. and Undheim, Eivind A. B. (2020). Mapping enzyme activity on tissue by functional mass spectrometry imaging. Advanced Materials, 59 (10), 3883-3886. doi: 10.1002/ANGE.201911390
2019
Journal Article
A versatile and robust serine protease inhibitor scaffold from Actinia tenebrosa
Chen, Xingchen, Leahy, Darren, Van Haeften, Jessica, Hartfield, Perry, Prentis, Peter J., van der Burg, Chloé A., Surm, Joachim M., Pavasovic, Ana, Madio, Bruno, Hamilton, Brett R., King, Glenn F., Undheim, Eivind A. B., Brattsand, Maria and Harris, Jonathan M. (2019). A versatile and robust serine protease inhibitor scaffold from Actinia tenebrosa. Marine Drugs, 17 (12) 701, 701. doi: 10.3390/md17120701
2019
Journal Article
A process of convergent amplification and tissue‐specific expression dominate the evolution of toxin and toxin‐like genes in sea anemones
Surm, Joachim M., Smith, Hayden L., Madio, Bruno, Undheim, Eivind A. B., King, Glenn F., Hamilton, Brett R., van der Burg, Chloé A., Pavasovic, Ana and Prentis, Peter J. (2019). A process of convergent amplification and tissue‐specific expression dominate the evolution of toxin and toxin‐like genes in sea anemones. Molecular Ecology, 28 (9) mec.15084, 2272-2289. doi: 10.1111/mec.15084
2019
Journal Article
Mud in the blood: Novel potent anticoagulant coagulotoxicity in the venoms of the Australian elapid snake genus Denisonia (mud adders) and relative antivenom efficacy
Youngman, Nicholas J., Zdenek, Christina N., Dobson, James S., Bittenbinder, Matyas A., Gillett, Amber, Hamilton, Brett, Dunstan, Nathan, Allen, Luke, Veary, Andrew, Veary, Elle and Fry, Bryan G. (2019). Mud in the blood: Novel potent anticoagulant coagulotoxicity in the venoms of the Australian elapid snake genus Denisonia (mud adders) and relative antivenom efficacy. Toxicology Letters, 302, 1-6. doi: 10.1016/j.toxlet.2018.11.015
2018
Journal Article
Balancing sufficiency and impact in reporting standards for mass spectrometry imaging experiments
Gustafsson, Ove J. R., Winderbaum, Lyron J., Condina, Mark R., Boughton, Berin A., Hamilton, Brett R., Undheim, Eivind A. B., Becker, Michael and Hoffmann, Peter (2018). Balancing sufficiency and impact in reporting standards for mass spectrometry imaging experiments. GigaScience, 7 (10). doi: 10.1093/gigascience/giy102
2018
Journal Article
Does size matter? Venom proteomic and functional comparison between night adder species (Viperidae: Causus) with short and long venom glands
Coimbra, Francisco C. P., Dobson, James, Zdenek, Christina N., Op den Brouw, Bianca, Hamilton, Brett, Debono, Jordan, Masci, Paul, Frank, Nathaniel, Ge, Lilin, Kwok, Hang Fai and Fry, Bryan G. (2018). Does size matter? Venom proteomic and functional comparison between night adder species (Viperidae: Causus) with short and long venom glands. Comparative Biochemistry and Physiology. Part C: Toxicology & Pharmacology, 211, 7-14. doi: 10.1016/j.cbpc.2018.05.003
2018
Journal Article
A comprehensive portrait of the venom of the giant red bull ant, Myrmecia gulosa, reveals a hyperdiverse hymenopteran toxin gene family
Robinson, Samuel D., Mueller, Alexander, Clayton, Daniel, Starobova, Hana, Hamilton, Brett R., Payne, Richard J., Vetter, Irina, King, Glenn F. and Undheim, Eivind A. B. (2018). A comprehensive portrait of the venom of the giant red bull ant, Myrmecia gulosa, reveals a hyperdiverse hymenopteran toxin gene family. Science Advances, 4 (9) eaau4640, eaau4640. doi: 10.1126/sciadv.aau4640
2018
Journal Article
PHAB toxins: a unique family of predatory sea anemone toxins evolving via intra-gene concerted evolution defines a new peptide fold
Madio, Bruno, Peigneur, Steve, Chin, Yanni K. Y., Hamilton, Brett R., Henriques, Sónia Troeira, Smith, Jennifer J., Cristofori-Armstrong, Ben, Dekan, Zoltan, Boughton, Berin A., Alewood, Paul F., Tytgat, Jan, King, Glenn F. and Undheim, Eivind A. B. (2018). PHAB toxins: a unique family of predatory sea anemone toxins evolving via intra-gene concerted evolution defines a new peptide fold. Cellular and Molecular Life Sciences, 75 (24), 4511-4524. doi: 10.1007/s00018-018-2897-6
2017
Journal Article
The use of imaging mass spectrometry to study peptide toxin distribution in Australian sea anemones
Mitchell, Michela L., Hamilton, Brett R., Madio, Bruno, Morales, Rodrigo A. V., Tonkin-Hill, Gerry Q., Papenfuss, Anthony T., Purcell, Anthony W., King, Glenn F., Undheim, Eivind A. B. and Norton, Raymond S. (2017). The use of imaging mass spectrometry to study peptide toxin distribution in Australian sea anemones. Australian Journal of Chemistry, 70 (11), 1235-1237. doi: 10.1071/CH17228
2017
Book Chapter
Spatial metabolite profiling by matrix-assisted laser desorption ionization mass spectrometry imaging
Boughton, Berin A. and Hamilton, Brett (2017). Spatial metabolite profiling by matrix-assisted laser desorption ionization mass spectrometry imaging. Metabolomics: from fundamentals to clinical applications. (pp. 291-321) edited by Alessandra Sussulini. Singapore: Springer. doi: 10.1007/978-3-319-47656-8_12
2016
Journal Article
Macrolide treatment inhibits Pseudomonas aeruginosa quorum sensing in non-cystic fibrosis bronchiectasis. An analysis from the bronchiectasis and low-dose erythromycin study trial
Burr, Lucy D., Rogers, Geraint B., Chen, Alice C.-H., Hamilton, Brett R., Pool, Gertruida F., Taylor, Steven L., Venter, Deon, Bowler, Simon D., Biga, Sally and McGuckin, Michael A. (2016). Macrolide treatment inhibits Pseudomonas aeruginosa quorum sensing in non-cystic fibrosis bronchiectasis. An analysis from the bronchiectasis and low-dose erythromycin study trial. Annals of the American Thoracic Society, 13 (10), 1697-1703. doi: 10.1513/AnnalsATS.201601-044OC
2015
Journal Article
The role of defensive ecological interactions in the evolution of conotoxins
Prashanth, J. R., Dutertre, S., Jin, A. H., Lavergne, V., Hamilton, B., Cardoso, F. C., Griffin, J., Venter, D. J., Alewood, P. F. and Lewis, R. J. (2015). The role of defensive ecological interactions in the evolution of conotoxins. Molecular Ecology, 25 (2), 598-615. doi: 10.1111/mec.13504
2015
Journal Article
Production and packaging of a biological arsenal: evolution of centipede venoms under morphological constraint
Undheim, Eivind A.B., Hamilton, Brett R., Kurniawan, Nyoman D., Bowlay, Greg, Cribb, Bronwen W., Merritt, David J., Fry,Bryan G., King, Glenn F and Venter, Deon J. (2015). Production and packaging of a biological arsenal: evolution of centipede venoms under morphological constraint. PNAS: Proceedings of the National Academy of Sciences of the United States of America, 112 (13), 4026-4031. doi: 10.1073/pnas.1424068112
2014
Journal Article
Multifunctional warheads: diversification of the toxin arsenal of centipedes via novel multidomain transcripts
Undheim, Eivind A. B., Sunagar, Kartik, Hamilton, Brett R., Jones, Alun, Venter, Deon J., Fry, Bryan G. and King, Glenn F. (2014). Multifunctional warheads: diversification of the toxin arsenal of centipedes via novel multidomain transcripts. Journal of Proteomics, 102, 1-10. doi: 10.1016/j.jprot.2014.02.024
2014
Journal Article
Evolution of separate predation- and defence-evoked venoms in carnivorous cone snails
Dutertre, Sébastien, Jin, Ai-Hua, Vetter, Irina, Hamilton, Brett, Sunagar, Kartik, Lavergne, Vincent, Dutertre, Valentin, Fry, Bryan G., Antunes, Agostinho, Venter, Deon J., Alewood, Paul F. and Lewis, Richard J. (2014). Evolution of separate predation- and defence-evoked venoms in carnivorous cone snails. Nature Communications, 5 (3521) 3521, 1-9. doi: 10.1038/ncomms4521
2014
Conference Publication
Unique evolution of D-conotoxins for defence
Prashanth, J. R., Dutertre, S., Jean, A., Lavergne, V., Hamilton, B., Cardoso, F. C., Griffin, J., Venter, D. J., Alewood, P. F. and Lewis, R. J. (2014). Unique evolution of D-conotoxins for defence. Venom to Drugs Conference 2014, Kingscliffe, NSW, Australia, 19-23 August 2014.
2013
Conference Publication
Rapid Identification of Vancomycin Resistant Enterococci with Maldi-Tof Mass Spectrometry
Griffin, Paul, Price, Gareth, Hamilton, Brett, Schooneveldt, Jacqueline, Urbanski, Tess, Schlebusch, Sanmarie and Venter, Deon (2013). Rapid Identification of Vancomycin Resistant Enterococci with Maldi-Tof Mass Spectrometry. The Royal Australasian College of Physicians Future Directions in Health Congress 2013 (RACP), Perth, WA Australia, 26-29 May 2013. Richmond, VIC Australia: Wiley-Blackwell. doi: 10.1111/imj.12153
2013
Conference Publication
Rapid identification of VRE with MALDI-TOF MS
Griffin, Paul M., Price, Gareth R., Schooneveldt, Jacqueline M., Schlebusch, Sanmarié, Urbanski, Tess, Hamilton, Brett and Venter, Deon (2013). Rapid identification of VRE with MALDI-TOF MS. Australasian Division of the International Academy of Pathology 37th Annual Scientific Meeting 2012, Sydney, NSW Australia, 1-3 June 2012. London, United Kingdom: Elsevier. doi: 10.1097/01.pat.0000426852.32930.4a
Funding
Past funding
Supervision
Availability
- Dr Brett Hamilton is:
- Available for supervision
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