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2023 Journal Article Fragment length profiles of cancer mutations enhance detection of circulating tumor DNA in patients with early-stage hepatocellular carcinomaNguyen, Van-Chu, Nguyen, Trong Hieu, Phan, Thanh Hai, Tran, Thanh-Huong Thi, Pham, Thu Thuy Thi, Ho, Tan Dat, Nguyen, Hue Hanh Thi, Duong, Minh-Long, Nguyen, Cao Minh, Nguyen, Que-Tran Bui, Bach, Hoai-Phuong Thi, Kim, Van-Vu, Pham, The-Anh, Nguyen, Bao Toan, Nguyen, Thanh Nhan Vo, Huynh, Le Anh Khoa, Tran, Vu Uyen, Tran, Thuy Thi Thu, Nguyen, Thanh Dang, Phu, Dung Thai Bieu, Phan, Boi Hoan Huu, Nguyen, Quynh-Tho Thi, Truong, Dinh-Kiet, Do, Thanh-Thuy Thi, Nguyen, Hoai-Nghia, Phan, Minh-Duy, Giang, Hoa and Tran, Le Son (2023). Fragment length profiles of cancer mutations enhance detection of circulating tumor DNA in patients with early-stage hepatocellular carcinoma. BMC Cancer, 23 (1) 233, 1-17. doi: 10.1186/s12885-023-10681-0 |
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2023 Journal Article Clinical validation of a ctDNA-based assay for multi-cancer detection: an interim report from a Vietnamese longitudinal prospective cohort study of 2795 participantsNguyen, Thi Hue Hanh, Lu, Y-Thanh, Le, Van Hoi, Bui, Vinh Quang, Nguyen, Lan Hieu, Pham, Nhu Hiep, Phan, Thanh Hai, Nguyen, Huu Thinh, Tran, Van Song, Bui, Chi Viet, Vo, Van Kha, Nguyen, Pham Thanh Nhan, Dang, Ha Huu Phuoc, Pham, Van Dung, Cao, Van Thinh, Nguyen, Thanh Dat, Nguyen, Luu Hong Dang, Phan, Ngoc Minh, Nguyen, Trong Hieu, Nguyen, Van Thien Chi, Pham, Thi Mong Quynh, Tran, Vu Uyen, Le, Minh Phong, Vo, Dac Ho, Tran, Thi Minh Thu, Nguyen, Minh Nguyen, Nguyen, Thi Thanh, Tieu, Ba Linh, Nguyen, Huu Tam Phuc ... Tran, Le Son (2023). Clinical validation of a ctDNA-based assay for multi-cancer detection: an interim report from a Vietnamese longitudinal prospective cohort study of 2795 participants. Cancer Investigation, 41 (3), 232-248. doi: 10.1080/07357907.2023.2173773 |
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2023 Journal Article Kinetics of neutralizing antibodies against omicron variant in Vietnamese healthcare workers after primary immunization with ChAdOx1-S and booster immunization with BNT162b2Van Vinh Chau, Nguyen, Nguyet, Lam Anh, Dung, Nguyen Thanh, Quang, Vo Minh, Truong, Nguyen Thanh, Toan, Le Mau, Hung, Le Manh, Man, Dinh Nguyen Huy, Khoa, Dao Bach, Phong, Nguyen Thanh, Ngoc, Nghiem My, Thao, Huynh Phuong, Ty, Dinh Thi Bich, Thanh, Pham Ba, Ny, Nguyen Thi Han, Thanh, Le Kim, Thuy, Cao Thu, Anh, Nguyen To, Hong, Nguyen Thi Thu, Nhu, Le Nguyen Truc, Yen, Lam Minh, Thwates, Guy, Thanh, Tran Tan and Van Tan, Le (2023). Kinetics of neutralizing antibodies against omicron variant in Vietnamese healthcare workers after primary immunization with ChAdOx1-S and booster immunization with BNT162b2. American Journal of Tropical Medicine and Hygiene, 108 (1), 137-144. doi: 10.4269/ajtmh.22-0434 |
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2023 Journal Article Revisiting Rockafellar's theorem on relative interiors of convex graphs with applications to convex generalized differentiationDang Van Cuong,, Mordukhovich, Boris S., Nguyen, Mau Nam and Sandine, Gary (2023). Revisiting Rockafellar's theorem on relative interiors of convex graphs with applications to convex generalized differentiation. Journal of Convex Analysis, 30 (3), 835-850. |
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2022 Journal Article Marine derivatives prevent E6 protein of HPV: an in silico study for drug developmentQuan, Pham Minh, Anh, Hoang Ba Quang, Hang, Nguyen Thi Nguyet, Toan, Dao Huy, Ha, Dao Viet and Long, Pham Quoc (2022). Marine derivatives prevent E6 protein of HPV: an in silico study for drug development. Regional Studies in Marine Science, 56 102619, 1-7. doi: 10.1016/j.rsma.2022.102619 |
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2022 Journal Article A modified Sequential Organ Failure Assessment score for dengue: development, evaluation and proposal for use in clinical trialsMcBride, Angela, Nguyen, Lam Vuong, Nguyen, Van Hao, Nguyen, Quang Huy, Ho, Quang Chanh, Nguyen,Thi Xuan Chau, Nguyen, Minh Nguyet, Ming, Damien K., Nguyen, Thanh Ngoc, Phung, Tran Huy Nhat, Nguyen, Thanh Phong, Luong, Thi Hue Tai, Phan, Vinh Tho, Dinh, The Trung, Dong, Thi Hoai Tam, Huynh, Trung Trieu, Geskus, Ronald Bertus, Llewelyn, Martin J., Thwaites, C. Louise and Yacoub, Sophie (2022). A modified Sequential Organ Failure Assessment score for dengue: development, evaluation and proposal for use in clinical trials. BMC Infectious Diseases, 22 (1) 722, 1-12. doi: 10.1186/s12879-022-07705-8 |
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2022 Journal Article Generalized differentiation and duality in infinite dimensions under polyhedral convexityCuong, D. V., Mordukhovich, B. S., Nam, N. M. and Sandine, G. (2022). Generalized differentiation and duality in infinite dimensions under polyhedral convexity. Set-Valued and Variational Analysis, 30 (4), 1503-1526. doi: 10.1007/s11228-022-00647-y |
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2022 Journal Article Ucl fimbriae regulation and glycan receptor specificity contribute to gut colonisation by extra-intestinal pathogenic Escherichia coliHancock, Steven J., Lo, Alvin W., Ve, Thomas, Day, Christopher J., Tan, Lendl, Mendez, Alejandra A., Phan, Minh-Duy, Nhu, Nguyen Thi Khanh, Peters, Kate M., Richards, Amanda C., Fleming, Brittany A., Chang, Chyden, Ngu, Dalton H. Y., Forde, Brian M., Haselhorst, Thomas, Goh, Kelvin G. K., Beatson, Scott A., Jennings, Michael P., Mulvey, Matthew A., Kobe, Bostjan and Schembri, Mark A. (2022). Ucl fimbriae regulation and glycan receptor specificity contribute to gut colonisation by extra-intestinal pathogenic Escherichia coli. PLoS Pathogens , 18 (6) e1010582, e1010582. doi: 10.1371/journal.ppat.1010582 |
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2022 Journal Article Gut–bladder axis in recurrent UTISchembri, Mark A., Nhu, Nguyen Thi Khanh and Phan, Minh-Duy (2022). Gut–bladder axis in recurrent UTI. Nature Microbiology, 7 (5), 601-602. doi: 10.1038/s41564-022-01113-z |
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2022 Journal Article Artemisinin resistance in the malaria parasite, Plasmodium falciparum, originates from its initial transcriptional responseZhu, Lei, van der Pluijm, Rob W., Kucharski, Michal, Nayak, Sourav, Tripathi, Jaishree, White, Nicholas J., Day, Nicholas P. J., Faiz, Abul, Phyo, Aung Pyae, Amaratunga, Chanaki, Lek, Dysoley, Ashley, Elizabeth A., Nosten, Francois, Smithuis, Frank, Ginsburg, Hagai, von Seidlein, Lorenz, Lin, Khin, Imwong, Mallika, Chotivanich, Kesinee, Mayxay, Mayfong, Dhorda, Mehul, Hoang Chau Nguyen, Thuy Nhien Thanh Nguyen, Miotto, Olivo, Newton, Paul N., Jittamala, Podjanee, Tripura, Rupam, Pukrittayakamee, Sasithon, Peto, Thomas J. ... Bozdech, Zbynek (2022). Artemisinin resistance in the malaria parasite, Plasmodium falciparum, originates from its initial transcriptional response. Communications Biology, 5 (1) 274. doi: 10.1038/s42003-022-03215-0 |
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2022 Journal Article Immunogenicity of Oxford-AstraZeneca COVID-19 vaccine in Vietnamese health-care workersNguyen Van Vinh Chau,, Lam Anh Nguyet,, Nguyen Thanh Truong,, Le Mau Toan,, Nguyen Thanh Dung,, Le Manh Hung,, Mai Thanh Nhan,, Dinh Nguyen Huy Man,, Nghiem My Ngoc,, Huynh Phuong Thao,, Tran Nguyen, Hoang Tu, Huynh, Kim Mai, Do, Thai Hung, Nguyen, Thi Han Ny, Le, Kim Thanh, Nguyen, To Anh, Nguyen, Thi Thu Hong, Le Nguyen, Truc Nhu, Lam, Minh Yen, Choisy, Marc, Tran, Tan Thanh, Thwaites, Guy and Le, Van Tan (2022). Immunogenicity of Oxford-AstraZeneca COVID-19 vaccine in Vietnamese health-care workers. American Journal of Tropical Medicine and Hygiene, 106 (2), 556-561. doi: 10.4269/ajtmh.21-0849 |
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2022 Journal Article Plasmid-mediated ciprofloxacin resistance imparts a selective advantage on Escherichia coli ST131Phan, Minh-Duy, Peters, Kate M., Alvarez Fraga, Laura, Wallis, Steven C., Hancock, Steven, Nhu, Nguyen Thi Khanh, Forde, Brian, Bauer, Michelle J., Paterson, David L., Beatson, Scott A, Lipman, Jeffrey and Schembri, Mark A. (2022). Plasmid-mediated ciprofloxacin resistance imparts a selective advantage on Escherichia coli ST131. Antimicrobial Agents and Chemotherapy, 66 (1) e02146-21, 1-11. doi: 10.1128/aac.02146-21 |
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2022 Journal Article Differential Afa/Dr fimbriae expression in the multidrug-resistant Escherichia coli ST131 cloneAlvarez-Fraga, Laura, Phan, Minh-Duy, Goh, Kelvin G. K., Nhu, Nguyen Thi Khanh, Hancock, Steven J., Allsopp, Luke P., Peters, Kate M., Forde, Brian M., Roberts, Leah W., Sullivan, Matthew J., Totsika, Makrina, Beatson, Scott A., Ulett, Glen C. and Schembri, Mark A. (2022). Differential Afa/Dr fimbriae expression in the multidrug-resistant Escherichia coli ST131 clone. mBio, 13 (1) e03519, e0351921. doi: 10.1128/mbio.03519-21 |
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2022 Journal Article Pathogenic Variant Profile of Hereditary Cancer Syndromes in a Vietnamese CohortTran, Van Thuan, Nguyen, Sao Trung, Pham, Xuan Dung, Phan, Thanh Hai, Nguyen, Van Chu, Nguyen, Huu Thinh, Nguyen, Huu Phuc, Doan, Phuong Thao Thi, Le, Tuan Anh, Nguyen, Bao Toan, Jasmine, Thanh Xuan, Nguyen, Duy Sinh, Nguyen, Hong-Dang Luu, Nguyen, Ngoc Mai, Do, Duy Xuan, Tran, Vu Uyen, Nguyen, Hue Hanh Thi, Le, Minh Phong, Nguyen, Yen Nhi, Do, Thanh Thuy Thi, Truong, Dinh Kiet, Tang, Hung Sang, Phan, Minh-Duy, Nguyen, Hoai-Nghia, Giang, Hoa and Tu, Lan N. (2022). Pathogenic Variant Profile of Hereditary Cancer Syndromes in a Vietnamese Cohort. Frontiers in Oncology, 11 789659. doi: 10.3389/fonc.2021.789659 |
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2021 Journal Article MicroPIPE: validating an end-to-end workflow for high-quality complete bacterial genome constructionMurigneux, Valentine, Roberts, Leah W., Forde, Brian M., Phan, Minh-Duy, Nhu, Nguyen Thi Khanh, Irwin, Adam D., Harris, Patrick N. A., Paterson, David L., Schembri, Mark A., Whiley, David M. and Beatson, Scott A. (2021). MicroPIPE: validating an end-to-end workflow for high-quality complete bacterial genome construction. BMC Genomics, 22 (1) 474, 474. doi: 10.1186/s12864-021-07767-z |
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2020 Journal Article Epidemic dynamics via wavelet theory and machine learning with applications to Covid-19To Tat Dat,, Frederic, Protin, Hang, Nguyen T. T., Jules, Martel, Nguyen Duc Thang,, Piffault, Charles, Willy, Rodriguez, Susely, Figueroa, Hong Van Le,, Tuschmann, Wilderich and Nguyen Tien Zung, (2020). Epidemic dynamics via wavelet theory and machine learning with applications to Covid-19. Biology, 9 (12) 477, 1-21. doi: 10.3390/biology9120477 |
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2020 Journal Article The natural history and transmission potential of asymptomatic severe acute respiratory syndrome coronavirus 2 infectionNguyen, Van Vinh Chau, Vo, Thanh Lam, Nguyen, Thanh Dung, Lam, Minh Yen, Ngo, Ngoc Quang Minh, Le, Manh Hung, Nghiem, My Ngoc, Nguyen, Tri Dung, Dinh Nguyen, Huy Man, Lam, Anh Nguyet, Le, Thanh Hoang Nhat, Le, Nguyen Truc Nhu, Nguyen, Thi Han Ny, Nguyen, Thi Thu Hong, Kestelyn, Evelyne, Nguyen, Thi Phuong Dung, Tran, Chanh Xuan, Tran, Tinh Hien, Nguyen, Thanh Phong, Tran Nguyen, Hoang Tu, Geskus, Ronald B., Tran, Tan Thanh, Nguyen, Thanh Truong, Nguyen, Tan Binh, Tang, Chi Thuong, Thwaites, Guy and Le, Van Tan (2020). The natural history and transmission potential of asymptomatic severe acute respiratory syndrome coronavirus 2 infection. Clinical Infectious Diseases, 71 (10), 2679-2687. doi: 10.1093/cid/ciaa711 |
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2020 Journal Article Comprehensive analysis of IncC plasmid conjugation identifies a crucial role for the transcriptional regulator AcaBHancock, Steven J., Phan, Minh-Duy, Luo, Zhenyao, Lo, Alvin W., Peters, Kate M., Nhu, Nguyen Thi Khanh, Forde, Brian M., Whitfield, Jason, Yang, Ji, Strugnell, Richard A., Paterson, David L., Walsh, Timothy R., Kobe, Bostjan, Beatson, Scott A. and Schembri, Mark A. (2020). Comprehensive analysis of IncC plasmid conjugation identifies a crucial role for the transcriptional regulator AcaB. Nature Microbiology, 5 (11), 1340-1348. doi: 10.1038/s41564-020-0775-0 |
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2020 Journal Article Severity detection tool for patients with infectious diseaseTadesse, Girmaw Abebe, Zhu, Tingting, Nhan Le Nguyen Thanh, Nguyen, Thanh Hung, Ha, Thi Hai Duong, Truong, Huu Khanh, Pham, Van Quang, Duc, Duong Tran, Lam, Minh Yen, Van Doorn, Rogier, Nguyen, Van Hao, Prince, John, Javed, Hamza, Kiyasseh, Dani, Le, Van Tan, Thwaites, Louise and Clifton, David A. (2020). Severity detection tool for patients with infectious disease. Healthcare Technology Letters, 7 (2), 45-50. doi: 10.1049/htl.2019.0030 |
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2019 Journal Article Dissecting the molecular evolution of fluoroquinolone-resistant <i>Shigella sonnei</i>The, Hao Chung, Boinett, Christine, Duy Pham Thanh, , Jenkins, Claire, Weill, Francois-Xavier, Howden, Benjamin P., Valcanis, Mary, De Lappe, Niall, Cormican, Martin, Wangchuk, Sonam, Bodhidatta, Ladaporn, Mason, Carl J., To Nguyen Thi Nguyen, , Tuyen Ha Thanh, , Vinh Phat Voong, , Vu Thuy Duong, , Phu Huong Lan Nguyen, , Turner, Paul, Wick, Ryan, Ceyssens, Pieter-Jan, Thwaites, Guy, Holt, Kathryn E., Thomson, Nicholas R., Rabaa, Maia A. and Baker, Stephen (2019). Dissecting the molecular evolution of fluoroquinolone-resistant Shigella sonnei. Nature Communications, 10 (1) 4828. doi: 10.1038/s41467-019-12823-0 |
