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2025 Journal Article Do transformers generalise better than bespoke tools for anonymisation?Klapaukh, Roman, El-Hayek, Carol and Boyle, Douglas IR (2025). Do transformers generalise better than bespoke tools for anonymisation?. Informatics in Medicine Unlocked, 52 101607. doi: 10.1016/j.imu.2024.101607 |
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2024 Journal Article Phenotyping people with a history of injecting drug use within electronic medical records using an interactive machine learning approachEl-Hayek, Carol, Nguyen, Thi, Hellard, Margaret E., Curtis, Michael, Sacks-Davis, Rachel, Aung, Htein Linn, Asselin, Jason, Boyle, Douglas I. R., Wilkinson, Anna, Polkinghorne, Victoria, Hocking, Jane S. and Dunn, Adam G. (2024). Phenotyping people with a history of injecting drug use within electronic medical records using an interactive machine learning approach. npj Digital Medicine, 7 (1) 346, 346. doi: 10.1038/s41746-024-01318-y |
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2023 Journal Article An evaluation of existing text de-identification tools for use with patient progress notes from Australian general practiceEl-Hayek, Carol, Barzegar, Siamak, Faux, Noel, Doyle, Kim, Pillai, Priyanka, Mutch, Simon J., Vaisey, Alaina, Ward, Roger, Sanci, Lena, Dunn, Adam G., Hellard, Margaret E., Hocking, Jane S., Verspoor, Karin and Boyle, Douglas I. R. (2023). An evaluation of existing text de-identification tools for use with patient progress notes from Australian general practice. International Journal of Medical Informatics, 173 105021. doi: 10.1016/j.ijmedinf.2023.105021 |
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2022 Journal Article The incidence of hepatitis C among gay, bisexual, and other men who have sex with men in Australia, 2009-2019Harney, Brendan L., Sacks-Davis, Rachel, van Santen, Daniela K., Traeger, Michael, Wilkinson, Anna L., Asselin, Jason, El-Hayek, Carol, Fairley, Christopher K., Roth, Norman, Bloch, Mark, Matthews, Gail, Donovan, Basil, Guy, Rebecca, Stoove, Mark, Hellard, Margaret E. and Doyle, Joseph S. (2022). The incidence of hepatitis C among gay, bisexual, and other men who have sex with men in Australia, 2009-2019. Clinical Infectious Diseases, 74 (10), 1804-1811. doi: 10.1093/cid/ciab720 |
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2022 Journal Article Hepatitis C incidence among patients attending primary care health services that specialise in the care of people who inject drugs, Victoria, Australia, 2009 to 2020Wilkinson, Anna Lee, van Santen, Daniela K., Traeger, Michael W., Sacks-Davis, Rachel, Asselin, Jason, Scott, Nick, Harney, Brendan L., Doyle, Joseph S., El-Hayek, Carol, Howell, Jessica, Bramwell, Fran, McManus, Hamish, Donovan, Basil, Stoove, Mark, Hellard, Margaret and Pedrana, Alisa (2022). Hepatitis C incidence among patients attending primary care health services that specialise in the care of people who inject drugs, Victoria, Australia, 2009 to 2020. International Journal of Drug Policy, 103 103655. doi: 10.1016/j.drugpo.2022.103655 |
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2022 Journal Article Real-world monitoring progress towards the elimination of hepatitis C virus in Australia using sentinel surveillance of primary care clinics; an ecological study of hepatitis C virus antibody tests from 2009 to 2019 (vol 150, E7, 2022)Lee Wilkinson, Anna, Pedrana, Alisa, Traeger, Michael W., Asselin, Jason, El-Hayek, Carol, Nguyen, Long, Polkinghorne, Victoria, Doyle, Joseph S., Thompson, Alexander J., Howell, Jessica, Scott, Nick, Dimech, Wayne, Guy, Rebecca, Hellard, Margaret and Stoove, Mark (2022). Real-world monitoring progress towards the elimination of hepatitis C virus in Australia using sentinel surveillance of primary care clinics; an ecological study of hepatitis C virus antibody tests from 2009 to 2019 (vol 150, E7, 2022). Epidemiology and Infection, 150 e44. doi: 10.1017/S0950268822000310 |
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2021 Journal Article Real-world monitoring progress towards the elimination of hepatitis C virus in Australia using sentinel surveillance of primary care clinics; an ecological study of hepatitis C virus antibody tests from 2009 to 2019Wilkinson, Anna Lee, Pedrana, Alisa, Traeger, Michael W., Asselin, Jason, El-Hayek, Carol, Nguyen, Long, Polkinghorne, Victoria, Doyle, Joseph S., Thompson, Alexander J., Howell, Jessica, Scott, Nick, Dimech, Wayne, Guy, Rebecca and Hellard, Margaret (2021). Real-world monitoring progress towards the elimination of hepatitis C virus in Australia using sentinel surveillance of primary care clinics; an ecological study of hepatitis C virus antibody tests from 2009 to 2019. Epidemiology and Infection, 150 e7. doi: 10.1017/S0950268821002624 |
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2021 Journal Article Microelimination of hepatitis C among people with human immunodeficiency virus coinfection: declining incidence and prevalence accompanying a multicenter treatment scale-up trialDoyle, Joseph S., van Santen, Daniela K., Iser, David, Sasadeusz, Joe, O'Reilly, Mark, Harney, Brendan, Traeger, Michael W., Roney, Janine, Cutts, Julia C., Bowring, Anna L., Winter, Rebecca, Medland, Nick, Fairley, Christopher K., Moore, Richard, Tee, B. K., Asselin, Jason, El-Hayek, Carol, Hoy, Jennifer F., Matthews, Gail, Prins, Maria, Stoove, Mark A. and Hellard, Margaret E. (2021). Microelimination of hepatitis C among people with human immunodeficiency virus coinfection: declining incidence and prevalence accompanying a multicenter treatment scale-up trial. Clinical Infectious Diseases, 73 (7), E2164-E2171. doi: 10.1093/cid/ciaa1500 |
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2021 Journal Article Improvements in transition times through the HIV cascade of care among gay and bisexual men with a new HIV diagnosis in New South Wales and Victoria, Australia (2012-19): a longitudinal cohort studySanten, Daniela K. van, Asselin, Jasan, Haber, Noah A., Traeger, Michael W., Callander, Denton, Donovan, Basil, El-Hayek, Carol, McMahon, James H., Petoumenos, Kathy, McManus, Hamish, Hoy, Jennifer F., Hellard, Margaret, Guy, Rebecca and Stoove, Mark (2021). Improvements in transition times through the HIV cascade of care among gay and bisexual men with a new HIV diagnosis in New South Wales and Victoria, Australia (2012-19): a longitudinal cohort study. Lancet HIV, 8 (10), E623-E632. doi: 10.1016/S2352-3018(21)00155-7 |
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2020 Journal Article Improved capture of trans and gender-diverse people diagnosed with HIV infection in Victoria following refinement to notification formRyan, K. E., Wiggins, J., Higgins, N., El-Hayek, C. and Stoove, M. (2020). Improved capture of trans and gender-diverse people diagnosed with HIV infection in Victoria following refinement to notification form. Hiv Medicine, 21 (10), E23-E24. doi: 10.1111/hiv.12915 |
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2020 Journal Article Phylogenetic clustering networks among heterosexual migrants with new HIV diagnoses post-migration in AustraliaSacks-Davis, Rachel, Chibo, Doris, Peach, Elizabeth, Aleksic, Eman, Crowe, Suzanne M., El Hayek, Carol, Marukutira, Tafireyi, Higgins, Nasra, Stoove, Mark and Hellard, Margaret (2020). Phylogenetic clustering networks among heterosexual migrants with new HIV diagnoses post-migration in Australia. PLoS One, 15 (9) e0237469, 1-15. doi: 10.1371/journal.pone.0237469 |
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2020 Journal Article The impact of universal access to direct-acting antiviral therapy on the hepatitis C cascade of care among individuals attending primary and community health servicesTraeger, Michael W., Pedrana, Alisa E., van Santen, Daniela K., Doyle, Joseph S., Howell, Jessica, Thompson, Alexander J., El-Hayek, Carol, Asselin, Jason, Polkinghorne, Victoria, Membrey, Dean, Bramwell, Fran, Carter, Allison, Guy, Rebecca, Stoove, Mark A. and Hellard, Margaret E. (2020). The impact of universal access to direct-acting antiviral therapy on the hepatitis C cascade of care among individuals attending primary and community health services. PLoS One, 15 (6) e0235445, 1-13. doi: 10.1371/journal.pone.0235445 |
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2020 Journal Article Privacy-preserving record linkage of deidentified records within a public health surveillance system: evaluation studyNguyen, Long, Stoove, Mark, Boyle, Douglas, Callander, Denton, McManus, Hamish, Asselin, Jason, Guy, Rebecca, Donovan, Basil, Hellard, Margaret and El-Hayek, Carol (2020). Privacy-preserving record linkage of deidentified records within a public health surveillance system: evaluation study. Journal of Medical Internet Research, 22 (6) e16757, 1-12. doi: 10.2196/16757 |
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2020 Journal Article Comparing sexual behaviours and knowledge between domestic students and Chinese international students in Australia: findings from two cross-sectional studiesDouglass, Caitlin H., Qin, Can, Martin, Fran, Xiao, Yinzong, El-Hayek, Carol and Lim, Megan S. C. (2020). Comparing sexual behaviours and knowledge between domestic students and Chinese international students in Australia: findings from two cross-sectional studies. International Journal of STD and AIDS, 31 (8), 781-790. doi: 10.1177/0956462420921726 |
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2020 Journal Article Gaps in the HIV diagnosis and care cascade for migrants in Australia, 2013-2017: a cross-sectional studyMarukutira, Tafireyi, Gray, Richard T., Douglass, Caitlin, El-Hayek, Carol, Moreira, Clarissa, Asselin, Jason, Donovan, Basil, Vickers, Tobias, Spelman, Tim, Crowe, Suzanne, Guy, Rebecca, Stoove, Mark and Hellard, Margaret (2020). Gaps in the HIV diagnosis and care cascade for migrants in Australia, 2013-2017: a cross-sectional study. PLoS Medicine, 17 (3) e1003044, 1-15. doi: 10.1371/journal.pmed.1003044 |
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2019 Journal Article Transformation of Australian Community Pharmacies Into Good Clinical Practice Compliant Trial Pharmacies for HIV Pre-Exposure ProphylaxisLal, Luxi, Ryan, Kathleen, Liu, Iris Yi, Price, Brian, Lockwood, Timmy, Aguirre, Ivette, Slobodian, Peter, Lam, Ada, Vassan, Manoj, Lim, Kie, Silverii, John, Tesoriero, Joseph, Phu, Johnny, Lim, Wan, Naidoo, Bharathy, Russell, Nick, Rundle, Matthew, Sewell, Rowan, Cooper, Craig, Hardman, Alexander, Quinn, Martin, Mak, Anne, Wright, Edwina J., Wright, Edwina, Stoove, Mark, Ruth, Simon, Batrouney, Colin, West, Michael, Murphy, Dean ... Owen, Louise (2019). Transformation of Australian Community Pharmacies Into Good Clinical Practice Compliant Trial Pharmacies for HIV Pre-Exposure Prophylaxis. Frontiers in Pharmacology, 10 1269. doi: 10.3389/fphar.2019.01269 |
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2019 Journal Article Risk of Subsequent HIV Infection Following Sexually Transmissible Infections Among Men Who Have Sex With MenHarney, Brendan L., Agius, Paul A., El-Hayek, Carol, Fairley, Christopher K., Chow, Eric P. F., Roth, Norman, Tee, B. K., Leslie, David, Tachedjian, Gilda, Hellard, Margaret and Stoove, Mark (2019). Risk of Subsequent HIV Infection Following Sexually Transmissible Infections Among Men Who Have Sex With Men. Open Forum Infectious Diseases, 6 (10) ofz376. doi: 10.1093/ofid/ofz376 |
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2019 Journal Article Two decades of surveillance data show late presentation among a diverse group of women diagnosed with HIV in Victoria, AustraliaMoreira, Clarissa, Boughey, Alison, Ryan, Kathleen Elizabeth, Higgins, Nasra, Rotty, Jessica, West, Michael, Hellard, Margaret, Stoove, Mark and El-Hayek, Carol (2019). Two decades of surveillance data show late presentation among a diverse group of women diagnosed with HIV in Victoria, Australia. Australian and New Zealand Journal of Public Health, 43 (5), 413-418. doi: 10.1111/1753-6405.12910 |
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2019 Journal Article Pathology Laboratory Surveillance in the Australian Collaboration for Coordinated Enhanced Sentinel Surveillance of Sexually Transmitted Infections and Blood-Borne Viruses: Protocol for a Cohort Studyvan Gemert, Caroline, Guy, Rebecca, Stoove, Mark, Dimech, Wayne, El-Hayek, Carol, Asselin, Jason, Dip, Grad, Moreira, Clarissa, Nguyen, Long, Callander, Denton, Boyle, Douglas, Donovan, Basil and Hellard, Margaret (2019). Pathology Laboratory Surveillance in the Australian Collaboration for Coordinated Enhanced Sentinel Surveillance of Sexually Transmitted Infections and Blood-Borne Viruses: Protocol for a Cohort Study. Jmir Research Protocols, 8 (8) e13625, e13625. doi: 10.2196/13625 |
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2019 Journal Article Association of HIV preexposure prophylaxis with incidence of sexually transmitted infections among individuals at high risk of HIV infectionTraeger, Michael W., Cornelisse, Vincent J., Asselin, Jason, Price, Brian, Roth, Norman J., Willcox, Jeff, Tee, Ban Kiem, Fairley, Christopher K., Chang, Christina C., Armishaw, Jude, Vujovic, Olga, Penn, Matthew, Cundill, Pauline, Forgan-Smith, George, Gall, John, Pickett, Claire, Lal, Luxi, Mak, Anne, Spelman, Tim D., Nguyen, Long, Murphy, Dean A., Ryan, Kathleen E., El-Hayek, Carol, West, Michael, Ruth, Simon, Batrouney, Colin, Lockwood, John T., Hoy, Jennifer F., Hellard, Margaret E. ... for the PrEPX Study Team (2019). Association of HIV preexposure prophylaxis with incidence of sexually transmitted infections among individuals at high risk of HIV infection. JAMA, 321 (14) 1380, 1380-1390. doi: 10.1001/jama.2019.2947 |
