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2024 Journal Article The impacts of positive selection on genomic variation in <i>Drosophila serrata</i>: Insights from a deep learning approachWang, Yiguan, Allen, Scott L., Reddiex, Adam J. and Chenoweth, Stephen F. (2024). The impacts of positive selection on genomic variation in Drosophila serrata: Insights from a deep learning approach. Molecular Ecology, 33 (18). doi: 10.1111/mec.17499 |
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2024 Other Outputs Drosophila serrata genome scaffolding and annotationAllen, Scott and Chenoweth, Steve (2024). Drosophila serrata genome scaffolding and annotation. The University of Queensland. (Dataset) doi: 10.48610/ce96855 |
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2024 Journal Article Misalignment of plastic and evolutionary responses of lifespan to novel carbohydrate dietsNarayan, Vikram P., Wasana, Nidarshani, Wilson, Alastair J. and Chenoweth, Stephen F. (2024). Misalignment of plastic and evolutionary responses of lifespan to novel carbohydrate diets. Royal Society Open Science, 11 (1) 231732, 231732. doi: 10.1098/rsos.231732 |
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2023 Journal Article Environmental dependence of mutational (co)variances of adaptive traitsKannan, Ashvitha, Dugand, Robert J., Appleton, Nicholas C., Chenoweth, Stephen F., Sgrò, Carla M. and McGuigan, Katrina (2023). Environmental dependence of mutational (co)variances of adaptive traits. Evolution, 77 (11), 2341-2351. doi: 10.1093/evolut/qpad154 |
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2023 Journal Article Dengue and chikungunya virus loads in the mosquito Aedes aegypti are determined by distinct genetic architecturesNovelo, Mario, Dutra, Heverton LC, Metz, Hillery C., Jones, Matthew J., Sigle, Leah T., Frentiu, Francesca D., Allen, Scott L., Chenoweth, Stephen F. and McGraw, Elizabeth A. (2023). Dengue and chikungunya virus loads in the mosquito Aedes aegypti are determined by distinct genetic architectures. PLoS Pathogens, 19 (4) e1011307, e1011307. doi: 10.1371/journal.ppat.1011307 |
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2022 Journal Article Maintenance of quantitative genetic variance in complex, multitrait phenotypes: the contribution of rare, large effect variants in 2 Drosophila speciesHine, Emma, Runcie, Daniel E., Allen, Scott L., Wang, Yiguan, Chenoweth, Stephen F., Blows, Mark W. and McGuigan, Katrina (2022). Maintenance of quantitative genetic variance in complex, multitrait phenotypes: the contribution of rare, large effect variants in 2 Drosophila species. Genetics, 222 (2) iyac122, 1-17. doi: 10.1093/genetics/iyac122 |
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2022 Journal Article Natural variation at a single gene generates sexual antagonism across fitness components in DrosophilaRusuwa, Bosco B., Chung, Henry, Allen, Scott L., Frentiu, Francesca D. and Chenoweth, Stephen F. (2022). Natural variation at a single gene generates sexual antagonism across fitness components in Drosophila. Current Biology, 32 (14), 3161-3169.e7. doi: 10.1016/j.cub.2022.05.038 |
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2022 Journal Article Genetic and social contributions to sex differences in lifespan in Drosophila serrataNarayan, Vikram P., Wilson, Alastair J. and Chenoweth, Stephen F. (2022). Genetic and social contributions to sex differences in lifespan in Drosophila serrata. Journal of Evolutionary Biology, 35 (4), 657-663. doi: 10.1111/jeb.13992 |
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2021 Other Outputs R code and input files required to generate figures and tables for BSFG analysis of standing variance in two Drosophila datasets. This dataset is the current version and supercedes any earlier versions.Hine, Emma, Runcie, Daniel E. , Allen, Scott L. , Wang, Yiguan , Chenoweth, Stephen F. , Blows, Mark W. and McGuigan, Katrina (2021). R code and input files required to generate figures and tables for BSFG analysis of standing variance in two Drosophila datasets. This dataset is the current version and supercedes any earlier versions.. The University of Queensland. (Dataset) doi: 10.48610/a3c5652 |
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2021 Journal Article Integrating genomics and multivariate evolutionary quantitative genetics: a case study of constraints on sexual selection in Drosophila serrataReddiex, Adam J. and Chenoweth, Stephen F. (2021). Integrating genomics and multivariate evolutionary quantitative genetics: a case study of constraints on sexual selection in Drosophila serrata. Proceedings of the Royal Society B: Biological Sciences, 288 (1960) 20211785, 20211785-197. doi: 10.1098/rspb.2021.1785 |
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2021 Other Outputs Enrichment analysis results for heritable common factors of Drosophila gene expressionHine, Emma, Runcie, Daniel E., Allen, Scott L., Wang, Yiguan, Chenoweth, Stephen F., Blows, Mark W. and McGuigan, Katrina (2021). Enrichment analysis results for heritable common factors of Drosophila gene expression. The University of Queensland. (Dataset) doi: 10.48610/90441fc |
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2021 Journal Article The impact of artificial selection for Wolbachia-mediated dengue virus blocking on phage WODutra, Heverton L. C., Ford, Suzanne A., Allen, Scott L., Bordenstein, Sarah R., Chenoweth, Stephen F., Bordenstein, Seth R. and McGraw, Elizabeth A. (2021). The impact of artificial selection for Wolbachia-mediated dengue virus blocking on phage WO. PLoS Neglected Tropical Diseases, 15 (7) e0009637, e0009637. doi: 10.1371/journal.pntd.0009637 |
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2021 Other Outputs R code used to implement Bayesian sparse factor genetic analysis of Drosophila gene expression.Hine, Emma, Runcie, Daniel E., Allen, Scott L., Wang, Yiguan, Chenoweth, Stephen F., Blows, Mark W. and McGuigan, Katrina (2021). R code used to implement Bayesian sparse factor genetic analysis of Drosophila gene expression.. The University of Queensland. (Dataset) doi: 10.48610/ec9b92c |
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2021 Other Outputs Two Drosophila datasets used in the Bayesian sparse factor analysis of standing genetic variance in 3385 gene expression traitsHine, Emma , Runcie, Daniel E., Allen, Scott L., Wang, Yiguan, Chenoweth, Stephen F. , Blows, Mark W. and McGuigan, Katrina (2021). Two Drosophila datasets used in the Bayesian sparse factor analysis of standing genetic variance in 3385 gene expression traits. The University of Queensland. (Dataset) doi: 10.48610/f3eede4 |
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2020 Journal Article Artificial selection finds new hypotheses for the mechanism of Wolbachia-mediated dengue blocking in mosquitoesFord, Suzanne A., Albert, Istvan, Allen, Scott L., Chenoweth, Stephen F., Jones, Matthew, Koh, Cassandra, Sebastian, Aswathy, Sigle, Leah T. and McGraw, Elizabeth A. (2020). Artificial selection finds new hypotheses for the mechanism of Wolbachia-mediated dengue blocking in mosquitoes. Frontiers in Microbiology, 11 1456, 1456. doi: 10.3389/fmicb.2020.01456 |
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2019 Journal Article Selection on Aedes aegypti alters Wolbachia-mediated dengue virus blocking and fitnessFord, Suzanne A., Allen, Scott L., Ohm, Johanna R., Sigle, Leah T., Sebastian, Aswathy, Albert, Istvan, Chenoweth, Stephen F. and McGraw, Elizabeth A. (2019). Selection on Aedes aegypti alters Wolbachia-mediated dengue virus blocking and fitness. Nature Microbiology, 4 (11), 1832-1839. doi: 10.1038/s41564-019-0533-3 |
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2019 Journal Article The origin and maintenance of metabolic allometry in animalsWhite, Craig R., Marshall, Dustin J., Alton, Lesley A., Arnold, Pieter A., Beaman, Julian E., Bywater, Candice L., Condon, Catriona, Crispin, Taryn S., Janetzki, Aidan, Pirtle, Elia, Winwood-Smith, Hugh S., Angilletta, Michael J., Chenoweth, Stephen F., Franklin, Craig E., Halsey, Lewis G., Kearney, Michael R., Portugal, Steven J. and Ortiz-Barrientos, Daniel (2019). The origin and maintenance of metabolic allometry in animals. Nature Ecology and Evolution, 3 (4), 598-603. doi: 10.1038/s41559-019-0839-9 |
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2019 Journal Article Dominance reversals and the maintenance of genetic variation for fitnessConnallon, Tim and Chenoweth, Stephen F. (2019). Dominance reversals and the maintenance of genetic variation for fitness. Plos Biology, 17 (1) e3000118, e3000118. doi: 10.1371/journal.pbio.3000118 |
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2019 Conference Publication Using evolutionary approaches to dissect the genetic basis of Wolbachia-mediated blocking of dengue virus in Aedes aegyptiFord, Suzanne, Allen, Scott, Sebastian, Aswathy, Albert, Istvan, Chenoweth, Stephen and McGraw, Elizabeth (2019). Using evolutionary approaches to dissect the genetic basis of Wolbachia-mediated blocking of dengue virus in Aedes aegypti. 68th Annual Meeting of the American Society for Tropical Medicine and Hygiene (ASTMH), National Harbor, MD, United States, 20 - 24 November 2019. Deerfield, IL, United States: American Society of Tropical Medicine and Hygiene. doi: 10.4269/ajtmh.abstract2019 |
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2018 Journal Article The transcriptional response of Aedes aegypti with variable extrinsic incubation periods for dengue virusKoh, Cassandra, Allen, Scott L., Herbert, Rosemarie I., McGraw, Elizabeth A. and Chenoweth, Stephen F. (2018). The transcriptional response of Aedes aegypti with variable extrinsic incubation periods for dengue virus. Genome Biology and Evolution, 10 (12), 3141-3151. doi: 10.1093/gbe/evy230 |
