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2018 Journal Article Comprehensive Analysis of Alternative Splicing Across Tumors from 8,705 PatientsKahles, Andre, Lehmann, Kjong-Van, Toussaint, Nora C., Huser, Matthias, Stark, Stefan G., Sachsenberg, Timo, Stegle, Oliver, Kohlbacher, Oliver, Sander, Chris, Ratsch, Gunnar, The Cancer Genome Atlas Research Network and Yang, Ian (2018). Comprehensive Analysis of Alternative Splicing Across Tumors from 8,705 Patients. Cancer Cell, 34 (2), 211-224.e6. doi: 10.1016/j.ccell.2018.07.001 |
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2018 Journal Article Erratum: Comprehensive Characterization of Cancer Driver Genes and MutationsBailey, Matthew H., Tokheim, Collin, Porta-Pardo, Eduard, Sengupta, Sohini, Bertrand, Denis, Weerasinghe, Amila, Colaprico, Antonio, Wendl, Michael C., Kim, Jaegil, Reardon, Brendan, Kwok-Shing Ng, Patrick, Jeong, Kang Jin, Cao, Song, Wang, Zixing, Gao, Jianjiong, Gao, Qingsong, Wang, Fang, Liu, Eric Minwei, Mularoni, Loris, Rubio-Perez, Carlota, Nagarajan, Niranjan, Cortés-Ciriano, Isidro, Zhou, Daniel Cui, Liang, Wen-Wei, Hess, Julian M., Yellapantula, Venkata D., Tamborero, David, Gonzalez-Perez, Abel, Suphavilai, Chayaporn ... Ding, Li (2018). Erratum: Comprehensive Characterization of Cancer Driver Genes and Mutations. Cell, 174 (4), 1034-1035. doi: 10.1016/j.cell.2018.07.034 |
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2018 Journal Article Erratum: The Cancer Genome Atlas Comprehensive Molecular Characterization of Renal Cell CarcinomaRicketts, Christopher J., De Cubas, Aguirre A., Fan, Huihui, Smith, Christof C., Lang, Martin, Reznik, Ed, Bowlby, Reanne, Gibb, Ewan A., Akbani, Rehan, Beroukhim, Rameen, Bottaro, Donald P., Choueiri, Toni K., Gibbs, Richard A., Godwin, Andrew K., Haake, Scott, Hakimi, A. Ari, Henske, Elizabeth P., Hsieh, James J., Ho, Thai H., Kanchi, Rupa S., Krishnan, Bhavani, Kwiatkowski, David J., Lui, Wembin, Merino, Maria J., Mills, Gordon B., Myers, Jerome, Nickerson, Michael L., Reuter, Victor E., Schmidt, Laura S. ... Mariamidze, Armaz (2018). Erratum: The Cancer Genome Atlas Comprehensive Molecular Characterization of Renal Cell Carcinoma. Cell Reports, 23 (12), 3698. doi: 10.1016/j.celrep.2018.06.032 |
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2018 Journal Article Prostate-specific membrane antigen avidity on positron emission tomography scan in malignant pleural mesotheliomaEkanayake, Siyaguna K. D. M., Yang, Ian A., Godbolt, David B., Windsor, Morgan N., Henderson, Daniel, Kyle, Samuel, Sterling, David and Lee, Joseph C. (2018). Prostate-specific membrane antigen avidity on positron emission tomography scan in malignant pleural mesothelioma. ANZ Journal of Surgery, 89 (9), E406-E407. doi: 10.1111/ans.14694 |
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2018 Journal Article Diagnosis of the cause of chronic dyspnoea in primary and tertiary care: characterizing diagnostic confidenceHuang, Yao C., Ferry, Olivia R., McKenzie, Scott C., Bowman, Rayleen, Hamilton, Michael, Masel, Philip J., Fong, Kwun M. and Yang, Ian A. (2018). Diagnosis of the cause of chronic dyspnoea in primary and tertiary care: characterizing diagnostic confidence. Journal of Thoracic Disease, 10 (6), 3745-3756. doi: 10.21037/jtd.2018.05.183 |
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2018 Journal Article Working while unwell: Workplace impairment in people with severe asthmaHiles, S. A., Harvey, E. S., McDonald, V. M., Peters, M., Bardin, P., Reynolds, P. N., Upham, J. W., Baraket, M., Bhikoo, Z., Bowden, J., Brockway, B., Chung, L. P., Cochrane, B., Foxley, G., Garrett, J., Hew, M., Jayaram, L., Jenkins, C., Katelaris, C., Katsoulotos, G., Koh, M. S., Kritikos, V., Lambert, M., Langton, D., Rivero, A. L., Marks, G. B., Middleton, P. G., Nanguzgambo, A., Radhakrishna, N. ... Gibson, P. G. (2018). Working while unwell: Workplace impairment in people with severe asthma. Clinical and Experimental Allergy, 48 (6), 650-662. doi: 10.1111/cea.13153 |
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2018 Journal Article The Immune Landscape of CancerThorsson, Vesteinn, Gibbs, David L., Brown, Scott D., Wolf, Denise, Bortone, Dante S., Yang, Tai-Hsien Ou, Porta-Pardo, Eduard, Gao, Galen F., Plaisier, Christopher L., Eddy, James A., Ziv, Elad, Culhane, Aedin C., Paull, Evan O., Sivakumar, I. K. Ashok, Gentles, Andrew J., Malhotra, Raunaq, Farshidfar, Farshad, Colaprico, Antonio, Parker, Joel S., Mose, Lisle E., Nam Sy Vo,, Liu, Jianfang, Liu, Yuexin, Rader, Janet, Dhankani, Varsha, Reynolds, Sheila M., Bowlby, Reanne, Califano, Andrea, Cherniack, Andrew D. ... Yang, Ian (2018). The Immune Landscape of Cancer. Immunity, 48 (4), 812-830.e14. doi: 10.1016/j.immuni.2018.03.023 |
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2018 Journal Article lncRNA Epigenetic Landscape Analysis Identifies EPIC1 as an Oncogenic lncRNA that Interacts with MYC and Promotes Cell-Cycle Progression in CancerWang, Zehua, Yang, Bo, Zhang, Min, Guo, Weiwei, Wu, Zhiyuan, Wang, Yue, Jia, Lin, Li, Song, Xie, Wen, Yang, Da, The Cancer Genome Atlas Research Network and Yang, Ian (2018). lncRNA Epigenetic Landscape Analysis Identifies EPIC1 as an Oncogenic lncRNA that Interacts with MYC and Promotes Cell-Cycle Progression in Cancer. Cancer Cell, 33 (4), 706-720.e9. doi: 10.1016/j.ccell.2018.03.006 |
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2018 Journal Article Comparative Molecular Analysis of Gastrointestinal AdenocarcinomasLiu, Yang, Sethi, Nilay S., Hinoue, Toshinori, Schneider, Barbara G., Cherniack, Andrew D., Sanchez-Vega, Francisco, Seoane, Jose A., Farshidfar, Farshad, Bowlby, Reanne, Islam, Mirazul, Kim, Jaegil, Chatila, Walid, Akbani, Rehan, Kanchi, Rupa S., Rabkin, Charles S., Willis, Joseph E., Wang, Kenneth K., McCall, Shannon J., Mishra, Lopa, Ojesina, Akinyemi I., Bullman, Susan, Pedamallu, Chandra Sekhar, Lazar, Alexander J., Sakai, Ryo, Thorsson, Vesteinn, Bass, Adam J., Laird, Peter W., The Cancer Genome Atlas Research Network and Yang, Ian (2018). Comparative Molecular Analysis of Gastrointestinal Adenocarcinomas. Cancer Cell, 33 (4), 721-735.e8. doi: 10.1016/j.ccell.2018.03.010 |
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2018 Journal Article Genomic and Functional Approaches to Understanding Cancer AneuploidyTaylor, Alison M., Shih, Juliann, Ha, Gavin, Gao, Galen F., Zhang, Xiaoyang, Berger, Ashton C., Schumacher, Steven E., Wang, Chen, Hu, Hai, Liu, Jianfang, Lazar, Alexander J., Cherniack, Andrew D., Beroukhim, Rameen, Meyerson, Matthew, The Cancer Genome Atlas Research Network and Yang, Ian (2018). Genomic and Functional Approaches to Understanding Cancer Aneuploidy. Cancer Cell, 33 (4), 676-689.e3. doi: 10.1016/j.ccell.2018.03.007 |
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2018 Journal Article A Comprehensive Pan-Cancer Molecular Study of Gynecologic and Breast CancersBerger, Ashton C., Korkut, Anil, Kanchi, Rupa S., Hegde, Apurva M., Lenoir, Walter, Liu, Wenbin, Liu, Yuexin, Fan, Huihui, Shen, Hui, Ravikumar, Visweswaran, Rao, Arvind, Schultz, Andre, Li, Xubin, Sumazin, Pavel, Williams, Cecilia, Mestdagh, Pieter, Gunaratne, Preethi H., Yau, Christina, Bowlby, Reanne, Robertson, A. Gordon, Tiezzi, Daniel G., Wang, Chen, Cherniack, Andrew D., Godwin, Andrew K., Kuderer, Nicole M., Rader, Janet S., Zuna, Rosemary E., Sood, Anil K., Lazar, Alexander J. ... Yang, Ian (2018). A Comprehensive Pan-Cancer Molecular Study of Gynecologic and Breast Cancers. Cancer Cell, 33 (4), 690-705.e9. doi: 10.1016/j.ccell.2018.03.014 |
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2018 Journal Article Comprehensive Characterization of Cancer Driver Genes and MutationsBailey, Matthew H., Tokheim, Collin, Porta-Pardo, Eduard, Sengupta, Sohini, Bertrand, Denis, Weerasinghe, Amila, Colaprico, Antonio, Wendl, Michael C., Kim, Jaegil, Reardon, Brendan, Ng, Patrick Kwok-Shing, Jeong, Kang Jin, Cao, Song, Wang, Zixing, Gao, Jianjiong, Gao, Qingsong, Wang, Fang, Liu, Eric Minwei, Mularoni, Loris, Rubio-Perez, Carlota, Nagarajan, Niranjan, Cortes-Ciriano, Isidro, Zhou, Daniel Cui, Liang, Wen-Wei, Hess, Julian M., Yellapantula, Venkata D., Tamborero, David, Gonzalez-Perez, Abel, Suphavilai, Chayaporn ... Yang, Ian (2018). Comprehensive Characterization of Cancer Driver Genes and Mutations. Cell, 173 (2) 385.e1, 371-385.e18. doi: 10.1016/j.cell.2018.02.060 |
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2018 Journal Article A Pan-Cancer Analysis of Enhancer Expression in Nearly 9000 Patient SamplesChen, Han, Li, Chunyan, Peng, Xinxin, Zhou, Zhicheng, Weinstein, John N., Liang, Han, The Cancer Genome Atlas Research Network and Yang, Ian (2018). A Pan-Cancer Analysis of Enhancer Expression in Nearly 9000 Patient Samples. Cell, 173 (2) 399.e1, 386-399.e12. doi: 10.1016/j.cell.2018.03.027 |
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2018 Journal Article Oncogenic Signaling Pathways in The Cancer Genome AtlasSanchez-Vega, Francisco, Mina, Marco, Armenia, Joshua, Chatila, Walid K., Luna, Augustin, La, Konnor C., Dimitriadoy, Sofia, Liu, David L., Kantheti, Havish S., Saghafinia, Sadegh, Chakravarty, Debyani, Daian, Foysal, Gao, Qingsong, Bailey, Matthew H., Liang, Wen-Wei, Foltz, Steven M., Shmulevich, Ilya, Ding, Li, Heins, Zachary, Ochoa, Angelica, Gross, Benjamin, Gao, Jianjiong, Zhang, Hongxin, Kundra, Ritika, Kandoth, Cyriac, Bahceci, Istemi, Dervishi, Leonard, Dogrusoz, Ugur, Zhou, Wanding ... Yang, Ian (2018). Oncogenic Signaling Pathways in The Cancer Genome Atlas. Cell, 173 (2), 321-337.e10. doi: 10.1016/j.cell.2018.03.035 |
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2018 Journal Article Cell-of-Origin Patterns Dominate the Molecular Classification of 10,000 Tumors from 33 Types of CancerHoadley, Katherine A., Yau, Christina, Hinoue, Toshinori, Wolf, Denise M., Lazar, Alexander J., Drill, Esther, Shen, Ronglai, Taylor, Alison M., Cherniack, Andrew D., Thorsson, Vesteinn, Akbani, Rehan, Bowlby, Reanne, Wong, Christopher K., Wiznerowicz, Maciej, Sanchez-Vega, Francisco, Robertson, A. Gordon, Schneider, Barbara G., Lawrence, Michael S., Noushmehr, Houtan, Malta, Tathiane M., Stuart, Joshua M., Benz, Christopher C., Laird, Peter W., The Cancer Genome Atlas Network and Yang, Ian (2018). Cell-of-Origin Patterns Dominate the Molecular Classification of 10,000 Tumors from 33 Types of Cancer. Cell, 173 (2), 291-304.e6. doi: 10.1016/j.cell.2018.03.022 |
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2018 Journal Article An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome AnalyticsLiu, Jianfang, Lichtenberg, Tara, Hoadley, Katherine A., Poisson, Laila M., Lazar, Alexander J., Cherniack, Andrew D., Kovatich, Albert J., Benz, Christopher C., Levine, Douglas A., Lee, Adrian V., Omberg, Larsson, Wolf, Denise M., Shriver, Craig D., Thorsson, Vesteinn, Hu, Hai, The Cancer Genome Atlas Research Network and Yang, Ian (2018). An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics. Cell, 173 (2) 416.e1, 400-416.e11. doi: 10.1016/j.cell.2018.02.052 |
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2018 Journal Article Machine Learning Identifies Stemness Features Associated with Oncogenic DedifferentiationMalta, Tathiane M., Sokolov, Artem, Gentles, Andrew J., Burzykowski, Tomasz, Poisson, Laila, Weinstein, John N., Kaminska, Bozena, Huelsken, Joerg, Omberg, Larsson, Gevaert, Olivier, Colaprico, Antonio, Czerwinska, Patrycja, Mazurek, Sylwia, Mishra, Lopa, Heyn, Holger, Krasnitz, Alex, Godwin, Andrew K., Lazar, Alexander J., Stuart, Joshua M., Hoadley, Katherine A., Laird, Peter W., Noushmehr, Houtan, Wiznerowicz, Maciej, The Cancer Genome Atlas Research Network and Yang, Ian (2018). Machine Learning Identifies Stemness Features Associated with Oncogenic Dedifferentiation. Cell, 173 (2), 338-354.e15. doi: 10.1016/j.cell.2018.03.034 |
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2018 Journal Article Pathogenic Germline Variants in 10,389 Adult CancersHuang, Kuan-lin, Mashl, R. Jay, Wu, Yige, Ritter, Deborah I., Wang, Jiayin, Oh, Clara, Paczkowska, Marta, Reynolds, Sheila, Wyczalkowski, Matthew A., Oak, Ninad, Scott, Adam D., Krassowski, Michal, Cherniack, Andrew D., Houlahan, Kathleen E., Jayasinghe, Reyka, Wang, Liang-Bo, Zhou, Daniel Cui, Liu, Di, Cao, Song, Kim, Young Won, Koire, Amanda, McMichael, Joshua F., Hucthagowder, Vishwanathan, Kim, Tae-Beom, Hahn, Abigail, Wang, Chen, McLellan, Michael D., Al-Mulla, Fahd, Johnson, Kimberly J. ... Yang, Ian (2018). Pathogenic Germline Variants in 10,389 Adult Cancers. Cell, 173 (2), 355-370.e14. doi: 10.1016/j.cell.2018.03.039 |
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2018 Journal Article Perspective on Oncogenic Processes at the End of the Beginning of Cancer GenomicsDing, Li, Bailey, Matthew H., Porta-Pardo, Eduard, Thorsson, Vesteinn, Colaprico, Antonio, Bertrand, Denis, Gibbs, David L., Weerasinghe, Amila, Huang, Kuan-lin, Tokheim, Collin, Cortes-Ciriano, Isidro, Jayasinghe, Reyka, Chen, Feng, Yu, Lihua, Sun, Sam, Olsen, Catharina, Kim, Jaegil, Taylor, Alison M., Cherniack, Andrew D., Akbani, Rehan, Suphavilai, Chayaporn, Nagarajan, Niranjan, Stuart, Joshua M., Mills, Gordon B., Wyczalkowski, Matthew A., Vincent, Benjamin G., Hutter, Carolyn M., Zenklusen, Jean Claude, Hoadley, Katherine A. ... Yang, Ian (2018). Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics. Cell, 173 (2), 305-320.e10. doi: 10.1016/j.cell.2018.03.033 |
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2018 Journal Article Molecular Characterization and Clinical Relevance of Metabolic Expression Subtypes in Human CancersPeng, Xinxin, Chen, Zhongyuan, Farshidfar, Farshad, Xu, Xiaoyan, Lorenzi, Philip L., Wang, Yumeng, Cheng, Feixiong, Tan, Lin, Mojumdar, Kamalika, Du, Di, Ge, Zhongqi, Li, Jun, Thomas, George V., Birsoy, Kivanc, Liu, Lingxiang, Zhang, Huiwen, Zhao, Zhongming, Marchand, Calena, Weinstein, John N., Bathe, Oliver F., Liang, Han, The Cancer Genome Atlas Research Network and Yang, Ian (2018). Molecular Characterization and Clinical Relevance of Metabolic Expression Subtypes in Human Cancers. Cell Reports, 23 (1), 255-269.e4. doi: 10.1016/j.celrep.2018.03.077 |
