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2018 Journal Article Pan-Cancer Analysis of lncRNA Regulation Supports Their Targeting of Cancer Genes in Each Tumor ContextChiu, Hua-Sheng, Somvanshi, Sonal, Patel, Ektaben, Chen, Ting-Wen, Singh, Vivek P., Zorman, Barry, Patil, Sagar L., Pan, Yinghong, Chatterjee, Sujash S., Sood, Anil K., Gunaratne, Preethi H., Sumazin, Pavel, The Cancer Genome Atlas Research Network and Yang, Ian (2018). Pan-Cancer Analysis of lncRNA Regulation Supports Their Targeting of Cancer Genes in Each Tumor Context. Cell Reports, 23 (1), 297-312.e12. doi: 10.1016/j.celrep.2018.03.064 |
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2018 Journal Article Systematic Analysis of Splice-Site-Creating Mutations in CancerJayasinghe, Reyka G., Cao, Song, Gao, Qingsong, Wendl, Michael C., Vo, Nam Sy, Reynolds, Sheila M., Zhao, Yanyan, Climente-Gonzalez, Hector, Chai, Shengjie, Wang, Fang, Varghese, Rajees, Huang, Mo, Liang, Wen-Wei, Wyczalkowski, Matthew A., Sengupta, Sohini, Li, Zhi, Payne, Samuel H., Fenyo, David, Miner, Jeffrey H., Walter, Matthew J., Vincent, Benjamin, Eyras, Eduardo, Chen, Ken, Shmulevich, Ilya, Chen, Feng, Ding, Li, The Cancer Genome Atlas Research Network and Yang, Ian (2018). Systematic Analysis of Splice-Site-Creating Mutations in Cancer. Cell Reports, 23 (1), 270-281.e3. doi: 10.1016/j.celrep.2018.03.052 |
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2018 Journal Article Genomic, Pathway Network, and Immunologic Features Distinguishing Squamous CarcinomasCampbell, Joshua D., Yau, Christina, Bowlby, Reanne, Liu, Yuexin, Brennan, Kevin, Fan, Huihui, Taylor, Alison M., Wang, Chen, Walter, Vonn, Akbani, Rehan, Byers, Lauren Averett, Creighton, Chad J., Coarfa, Cristian, Shih, Juliann, Cherniack, Andrew D., Gevaert, Olivier, Prunello, Marcos, Shen, Hui, Anur, Pavana, Chen, Jianhong, Cheng, Hui, Hayes, D. Neil, Bullman, Susan, Pedamallu, Chandra Sekhar, Ojesina, Akinyemi I., Sadeghi, Sara, Mungall, Karen L., Robertson, A. Gordon, Benz, Christopher ... Yang, Ian (2018). Genomic, Pathway Network, and Immunologic Features Distinguishing Squamous Carcinomas. Cell Reports, 23 (1), 194-212.e6. doi: 10.1016/j.celrep.2018.03.063 |
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2018 Journal Article The Cancer Genome Atlas Comprehensive Molecular Characterization of Renal Cell CarcinomaRicketts, Christopher J., de Cubas, Aguirre A., Fan, Huihui, Smith, Christof C., Lang, Martin, Reznik, Ed, Bowlby, Reanne, Gibb, Ewan A., Akbani, Rehan, Beroukhim, Rameen, Bottaro, Donald P., Choueiri, Toni K., Gibbs, Richard A., Godwin, Andrew K., Haake, Scott, Hakimi, A. Ari, Henske, Elizabeth P., Hsieh, James J., Ho, Thai H., Kanchi, Rupa S., Krishnan, Bhavani, Kwaitkowski, David J., Lui, Wembin, Merino, Maria J., Mills, Gordon B., Myers, Jerome, Nickerson, Michael L., Reuter, Victor E., Schmidt, Laura S. ... Yang, Ian (2018). The Cancer Genome Atlas Comprehensive Molecular Characterization of Renal Cell Carcinoma. Cell Reports, 23 (1), 313-326.e5. doi: 10.1016/j.celrep.2018.03.075 |
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2018 Journal Article Somatic Mutational Landscape of Splicing Factor Genes and Their Functional Consequences across 33 Cancer TypesSeiler, Michael, Peng, Shouyong, Agrawal, Anant A., Palacino, James, Teng, Teng, Zhu, Ping, Smith, Peter G., Buonamici, Silvia, Yu, Lihua, The Cancer Genome Atlas Research Network and Yang, Ian (2018). Somatic Mutational Landscape of Splicing Factor Genes and Their Functional Consequences across 33 Cancer Types. Cell Reports, 23 (1), 282-296.e4. doi: 10.1016/j.celrep.2018.01.088 |
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2018 Journal Article Driver Fusions and Their Implications in the Development and Treatment of Human CancersGao, Qingsong, Liang, Wen-Wei, Foltz, Steven M., Mutharasu, Gnanavel, Jayasinghe, Reyka G., Cao, Song, Liao, Wen-Wei, Reynolds, Sheila M., Wyczalkowski, Matthew A., Yao, Lijun, Yu, Lihua, Sun, Sam Q., Chen, Ken, Lazar, Alexander J., Fields, Ryan C., Wendl, Michael C., Van Tine, Brian A., Vij, Ravi, Chen, Feng, Nykter, Matti, Shmulevich, Ilya, Ding, Li, The Cancer Genome Atlas Research Network and Yang, Ian (2018). Driver Fusions and Their Implications in the Development and Treatment of Human Cancers. Cell Reports, 23 (1), 227-238.e3. doi: 10.1016/j.celrep.2018.03.050 |
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2018 Journal Article Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic PipelinesEllrott, Kyle, Bailey, Matthew H., Saksena, Gordon, Covington, Kyle R., Kandoth, Cyriac, Stewart, Chip, Hess, Julian, Ma, Singer, Chiotti, Kami E., McLellan, Michael, Sofia, Heidi J., Hutter, Carolyn, Getz, Gad, Wheeler, David, Ding, Li, The Cancer Genome Atlas Research Network and Yang, Ian (2018). Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines. Cell Systems, 6 (3), 271-281.e7. doi: 10.1016/j.cels.2018.03.002 |
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2018 Journal Article Pan-cancer Alterations of the MYC Oncogene and Its Proximal Network across the Cancer Genome AtlasSchaub, Franz X., Dhankani, Varsha, Berger, Ashton C., Trivedi, Mihir, Richardson, Anne B., Shaw, Reid, Zhao, Wei, Zhang, Xiaoyang, Ventura, Andrea, Liu, Yuexin, Ayer, Donald E., Hurlin, Peter J., Cherniack, Andrew D., Eisenman, Robert N., Bernard, Brady, Grandori, Carla, The Cancer Genome Atlas Network and Yang, Ian (2018). Pan-cancer Alterations of the MYC Oncogene and Its Proximal Network across the Cancer Genome Atlas. Cell Systems, 6 (3), 282-300.e2. doi: 10.1016/j.cels.2018.03.003 |
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2018 Journal Article Editorial on PanCan studyMarshall, Henry M., Yang, Ian A., Bowman, Rayleen V. and Fong, Kwun M. (2018). Editorial on PanCan study. Translational Lung Cancer Research, 7 (Suppl 1), S57-S59. doi: 10.21037/tlcr.2018.01.17 |
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2018 Journal Article The contribution of respiratory microbiome analysis to a treatable traits model of careTaylor, Steven L., O'Farrell, Hannah E., Simpson, Jodie L., Yang, Ian A. and Rogers, Geraint B. (2018). The contribution of respiratory microbiome analysis to a treatable traits model of care. Respirology, 24 (1), 19-28. doi: 10.1111/resp.13411 |
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2017 Journal Article COPD-X australian and New Zealand guidelines for the diagnosis and management of chronic obstructive pulmonary disease: 2017 updateYang, Ian A., Brown, Juliet L., George, Johnson, Jenkins, Sue, McDonald, Christine F., McDonald, Vanessa M., Phillips, Kirsten, Smith, Brian J., Zwar, Nicholas A. and Dabscheck, Eli (2017). COPD-X australian and New Zealand guidelines for the diagnosis and management of chronic obstructive pulmonary disease: 2017 update. Medical Journal of Australia, 207 (10), 436-442. doi: 10.5694/mja17.00686 |
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2017 Journal Article The effect of different radiological models on diagnostic accuracy and lung cancer screening performanceMarshall, Henry M., Zhao, Henry, Bowman, Rayleen V., Passmore, Linda H., McCaul, Elizabeth M., Yang, Ian A. and Fong, Kwun M. (2017). The effect of different radiological models on diagnostic accuracy and lung cancer screening performance. Thorax, 72 (12), 1147-1150. doi: 10.1136/thoraxjnl-2016-209624 |
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2017 Journal Article Ultrafine particle transport and deposition in a large scale 17-generation lung modelIslam, Mohammad S., Saha, Suvash C., Sauret, Emilie, Gemci, Tevfik, Yang, Ian A. and Gu, Y. T. (2017). Ultrafine particle transport and deposition in a large scale 17-generation lung model. Journal of Biomechanics, 64, 16-25. doi: 10.1016/j.jbiomech.2017.08.028 |
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2017 Journal Article Is Digital Tomosynthesis on Par With Computed Tomography for the Detection and Measurement of Pulmonary Nodules?Lee, Xiang Wen, Marshall, Henry M., Leong, Steven C., O'Rourke, Rachael L., Steinke, Karin, Mirjalili, Negar, Bowman, Rayleen V., Yang, Ian A. and Fong, Kwun M. (2017). Is Digital Tomosynthesis on Par With Computed Tomography for the Detection and Measurement of Pulmonary Nodules?. Journal of Thoracic Imaging, 32 (6), W67-W68. doi: 10.1097/RTI.0000000000000298 |
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2017 Journal Article RE: Proportion of Never-Smoker Non-Small Cell Lung Cancer Patients at Three Diverse InstitutionsPage, Barbara J, Bowman, Rayleen V, Yang, Ian A and Fong, Kwun M (2017). RE: Proportion of Never-Smoker Non-Small Cell Lung Cancer Patients at Three Diverse Institutions. Journal of the National Cancer Institute, 110 (4), 432-432. doi: 10.1093/jnci/djx216 |
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2017 Journal Article Ist eine thrombophilie-untersuchung bei patienten mit venöser thromboembolie notwendig?Kudo, M., Lee, H. L., Yang, I. A. and Masel, P. J. (2017). Ist eine thrombophilie-untersuchung bei patienten mit venöser thromboembolie notwendig?. Vasomed, 29 (5). |
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2017 Journal Article Effect of azithromycin on asthma exacerbations and quality of life in adults with persistent uncontrolled asthma (AMAZES): a randomised, double-blind, placebo-controlled trialGibson, Peter G., Yang, Ian A., Upham, John W., Reynolds, Paul N., Hodge, Sandra, James, Alan L., Jenkins, Christine, Peters, Matthew J., Marks, Guy B., Baraket, Melissa, Powell, Heather, Taylor, Steven L., Leong, Lex E. X., Rogers, Geraint B. and Simpson, Jodie L. (2017). Effect of azithromycin on asthma exacerbations and quality of life in adults with persistent uncontrolled asthma (AMAZES): a randomised, double-blind, placebo-controlled trial. The Lancet, 390 (10095), 659-668. doi: 10.1016/S0140-6736(17)31281-3 |
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2017 Journal Article Oxidative potential of gas phase combustion emissions - an underestimated and potentially harmful component of air pollution from combustion processesStevanovic, S., Vaughan, A., Hedayat, F., Salimi, F., Rahman, M. M., Zare, A., Brown, R. A., Brown, R. J., Wang, H., Zhang, Z., Wang, X., Bottle, S. E., Yang, I. A. and Ristovski, Z. D. (2017). Oxidative potential of gas phase combustion emissions - an underestimated and potentially harmful component of air pollution from combustion processes. Atmospheric Environment, 158, 227-235. doi: 10.1016/j.atmosenv.2017.03.041 |
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2017 Journal Article Inflammatory phenotypes in patients with severe asthma are associated with distinct airway microbiologyTaylor, Steven L., Leong, Lex E. X., Choo, Jocelyn M., Wesselingh, Steve, Yang, Ian A., Upham, John W., Reynolds, Paul N., Hodge, Sandra, James, Alan L., Jenkins, Christine, Peters, Matthew J., Baraket, Melissa, Marks, Guy B., Gibson, Peter G., Simpson, Jodie L. and Rogers, Geraint B. (2017). Inflammatory phenotypes in patients with severe asthma are associated with distinct airway microbiology. Journal of Allergy and Clinical Immunology, 141 (1), 94-103.e15. doi: 10.1016/j.jaci.2017.03.044 |
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2017 Journal Article Radiation therapy for preventing instrumentation track metastases in malignant pleural mesotheliomaEastment, J. G., Burke, J. P., Fong, K. M., Yang, I. A. and Bowman, R. V. (2017). Radiation therapy for preventing instrumentation track metastases in malignant pleural mesothelioma. Cochrane Database of Systematic Reviews, 2017 (2) CD012541. doi: 10.1002/14651858.CD012541 |
