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2025 Conference Publication CO(2)-Metabolism: Quantifying Mixed Carbon Oxide And Hydrogen Gas Fermentation By Clostridium Autoethanogenum.Heffernan, James K., Gonzalez Garcia, R. Axayactl, McCubbin, Timothy, Kopke, Michael, Valgepea, Kaspar, Nielsen, Lars and Marcellin, Esteban (2025). CO(2)-Metabolism: Quantifying Mixed Carbon Oxide And Hydrogen Gas Fermentation By Clostridium Autoethanogenum.. The Carbon Recycling Network Conference 5, Cheshire, United Kingdom, 9-12 March 2025. |
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2025 Conference Publication Gas fermentation opportunities for waste recycling in food and chemical industriesHeffernan, James (2025). Gas fermentation opportunities for waste recycling in food and chemical industries. 2nd International Forum on Precision Fermentation, Shanghai, China, 28 February-1 March 2025. |
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2025 Journal Article Industry-relevant undergraduate education in hands-on bioprocess engineeringGhebosu, Raluca, Iannotta, Dalila, Storeshaw, Peter, Heffernan, James, Masud, Mostafa Kamal, Li, Li, Cooper-White, Justin, Oehmen, Adrian, Carvalho, Gilda and Wolfram, Joy (2025). Industry-relevant undergraduate education in hands-on bioprocess engineering. Chemical Engineering Journal, 503 158332, 1-7. doi: 10.1016/j.cej.2024.158332 |
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2024 Journal Article Autotrophic adaptive laboratory evolution of the acetogen Clostridium autoethanogenum delivers the gas-fermenting strain LAbrini with superior growth, products, and robustnessIngelman, Henri, Heffernan, James K., Harris, Audrey, Brown, Steven D., Shaikh, Kurshedaktar Majibullah, Saqib, Asfand Yar, Pinheiro, Marina J., de Lima, Lorena Azevedo, Rodriguez Martinez, Karen, Gonzalez-Garcia, Ricardo A., Hawkins, Grant, Daleiden, Jim, Tran, Loan, Zeleznik, Hunter, Jensen, Rasmus O., Reynoso, Vinicio, Schindel, Heidi, Jänes, Jürgen, Simpson, Séan D., Köpke, Michael, Marcellin, Esteban and Valgepea, Kaspar (2024). Autotrophic adaptive laboratory evolution of the acetogen Clostridium autoethanogenum delivers the gas-fermenting strain LAbrini with superior growth, products, and robustness. New Biotechnology, 83, 1-15. doi: 10.1016/j.nbt.2024.06.002 |
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2024 Journal Article Adaptive laboratory evolution of Clostridium autoethanogenum to metabolize CO2 and H2 enhances growth rates in chemostat and unravels proteome and metabolome alterationsHeffernan, James, Garcia Gonzalez, R. Axayactl, Mahamkali, Vishnu, McCubbin, Tim, Daygon, Dara, Liu, Lian, Palfreyman, Robin, Harris, Audrey, Koepke, Michael, Valgepea, Kaspar, Nielsen, Lars Keld and Marcellin, Esteban (2024). Adaptive laboratory evolution of Clostridium autoethanogenum to metabolize CO2 and H2 enhances growth rates in chemostat and unravels proteome and metabolome alterations. Microbial Biotechnology, 17 (4) e14452, e14452. doi: 10.1111/1751-7915.14452 |
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2024 Conference Publication CO(2)-metabolism: quantifying mixed carbon oxide and hydrogen gas fermentation by Clostridium autoethanogenumHeffernan, James K., Gonzalez-Garcia, R. Axayactl, McCubbin, Timothy, Köpke, Michael, Valgepea, Kaspar, Nielsen, Lars K. and Marcellin, Esteban (2024). CO(2)-metabolism: quantifying mixed carbon oxide and hydrogen gas fermentation by Clostridium autoethanogenum. Gas fermentation conference 2024, Gladstone, QLD Australia, 21-25 February 2024. |
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2023 Journal Article Tuning flow-through cu-based hollow fiber gas-diffusion electrode for high-efficiency carbon monoxide (CO) electroreduction to C2+productsRabiee, Hesamoddin, Heffernan, James K., Ge, Lei, Zhang, Xueqin, Yan, Penghui, Marcellin, Esteban, Hu, Shihu, Zhu, Zhonghua, Wang, Hao and Yuan, Zhiguo (2023). Tuning flow-through cu-based hollow fiber gas-diffusion electrode for high-efficiency carbon monoxide (CO) electroreduction to C2+products. Applied Catalysis B: Environmental, 330 122589, 122589. doi: 10.1016/j.apcatb.2023.122589 |
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2023 Conference Publication Quantifying Co-Metabolism of CO/CO2 By Clostridium autoethanogenum in ChemostatsHeffernan, James, Gonzalez-Garcia, R. Axayacatl, McCubbin, Timothy, Köpke, Michael, Valgepea, Kaspar, Nielsen, Lars and Marcellin, Esteban (2023). Quantifying Co-Metabolism of CO/CO2 By Clostridium autoethanogenum in Chemostats. Metabolic Engineering 15, Singapore, 11-15 June 2023. |
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2023 Other Outputs Sustainable fuel and chemical production via Gas Fermentation: exploring CO2 metabolism by Clostridium autoethanogenumHeffernan, James (2023). Sustainable fuel and chemical production via Gas Fermentation: exploring CO2 metabolism by Clostridium autoethanogenum. PhD Thesis, Australian Institute for Bioengineering and Nanotechnology, The University of Queensland. doi: 10.14264/227fcc6 |
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2023 Journal Article Microbial conversion of waste gases into single-cell proteinJain, Surbhi, Heffernan, James, Joshi, Jitendra, Watts, Thomas, Marcellin, Esteban and Greening, Chris (2023). Microbial conversion of waste gases into single-cell protein. Microbiology Australia, 44 (1), 27-30. doi: 10.1071/ma23007 |
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2023 Journal Article Biogas upgrading using Clostridium autoethanogenum for value-added productsHeffernan, James K., Lai, Chun-Yu, Gonzalez-Garcia, R. Axayacatl, Nielsen, Lars Keld, Guo, Jianhua and Marcellin, Esteban (2023). Biogas upgrading using Clostridium autoethanogenum for value-added products. Chemical Engineering Journal, 452 (Part 1) 138950, 1-7. doi: 10.1016/j.cej.2022.138950 |
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2022 Conference Publication Adaptive laboratory evolution of Clostridium autoethanogenum to enhance CO2 valorizationHeffernan, James, Gonzalez Garcia, Ricardo A., McCubbin, Timothy, Daygon, Dara, Plan, Manuel, Talbo, Gert, Liu, Lian, Palfreyman, Robin, Köpke, Michael, Nielsen, Lars K. and Marcellin, Esteban (2022). Adaptive laboratory evolution of Clostridium autoethanogenum to enhance CO2 valorization. Biochemical and Molecular Engineering XXII, Cancun, Mexico, 26-30 June 2022. |
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2022 Journal Article Analytical tools for unravelling the metabolism of gas-fermenting ClostridiaHeffernan, James K., Mahamkali, Vishnu, Valgepea, Kaspar, Marcellin, Esteban and Nielsen, Lars K. (2022). Analytical tools for unravelling the metabolism of gas-fermenting Clostridia. Current Opinion in Biotechnology, 75 102700, 102700. doi: 10.1016/j.copbio.2022.102700 |
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2022 Conference Publication Engineering novel regulation factors in Clostridium autoethanogenum using rationale from a test-system in Escherichia coliHeffernan, James, Gonzalez Garcia, Axa, Warden, Andrew, Nielsen, Lars K. and Marcellin, Esteban (2022). Engineering novel regulation factors in Clostridium autoethanogenum using rationale from a test-system in Escherichia coli. Centre of Excellence in Synthetic Biology Annual Conference, Australia, 3-6 April 2022. |
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2021 Journal Article Strategies to improve viability of a circular carbon bioeconomy – A techno-economic review of microbial electrosynthesis and gas fermentationWood, Jamin C., Grové, Johannes, Marcellin, Esteban, Heffernan, James K., Hu, Shihu, Yuan, Zhiguo and Virdis, Bernardino (2021). Strategies to improve viability of a circular carbon bioeconomy – A techno-economic review of microbial electrosynthesis and gas fermentation. Water Research, 201 117306, 1-14. doi: 10.1016/j.watres.2021.117306 |
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2021 Journal Article Transcriptional control of Clostridium autoethanogenum using CRISPRiFackler, Nick, Heffernan, James, Juminaga, Alex, Doser, Damien, Nagaraju, Shilpa, Gonzalez-Garcia, R. Axayacatl, Simpson, Séan D., Marcellin, Esteban and Köpke, Michael (2021). Transcriptional control of Clostridium autoethanogenum using CRISPRi. Synthetic Biology, 6 (1) ysab008, 1-8. doi: 10.1093/synbio/ysab008 |
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2020 Conference Publication Revamping the model CO-fermenting acetogen, Clostridium autoethanogenum, as a CO2-valorisation platformHeffernan, James, Valgepea, Kaspar, de Souza Pinto Lemgruber, Renato, Casini, Isabella, Plan, Manuel, Tappel, Ryan, Simpson, Sean D., Köpke, Michael, Gonzalez-Garcia, Ricardo A., Nielsen, Lars K. and Marcellin, Esteban (2020). Revamping the model CO-fermenting acetogen, Clostridium autoethanogenum, as a CO2-valorisation platform. International Chain Elongation Conference 2020, Virtual, 26-27 October 2020. Wageningen, Germany: Wageningen University and Research. doi: 10.18174/icec2020.18019 |
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2020 Journal Article Enhancing CO2-valorization using Clostridium autoethanogenum for sustainable fuel and chemicals productionHeffernan, James K., Valgepea, Kaspar, Lemgruber, Renato de Souza Pinto, Casini, Isabella, Plan, Manuel, Tappel, Ryan, Simpson, Sean D., Kopke, Michael, Nielsen, Lars K. and Marcellin, Esteban (2020). Enhancing CO2-valorization using Clostridium autoethanogenum for sustainable fuel and chemicals production. Frontiers in Bioengineering and Biotechnology, 8, 1-10. doi: 10.3389/fbioe.2020.00204 |
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2020 Other Outputs Enhancing CO2-valorization using Clostridium autoethanogenum for sustainable fuel and chemicals productionHeffernan, James K., Valgepea, Kaspar, de Souza Pinto Lemgruber, Renato, Casini, Isabella, Plan, Manuel, Tappel, Ryan, Simpson, Sean D., Köpke, Michael, Nielsen, Lars K. and Marcellin, Esteban (2020). Enhancing CO2-valorization using Clostridium autoethanogenum for sustainable fuel and chemicals production. doi: 10.1101/2020.01.23.917666 |
