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2024 Journal Article Topology in soft and biological matterTubiana, Luca, Alexander, Gareth P., Barbensi, Agnese, Buck, Dorothy, Cartwright, Julyan H.E., Chwastyk, Mateusz, Cieplak, Marek, Coluzza, Ivan, Čopar, Simon, Craik, David J., Di Stefano, Marco, Everaers, Ralf, Faísca, Patrícia F.N., Ferrari, Franco, Giacometti, Achille, Goundaroulis, Dimos, Haglund, Ellinor, Hou, Ya-Ming, Ilieva, Nevena, Jackson, Sophie E., Japaridze, Aleksandre, Kaplan, Noam, Klotz, Alexander R., Li, Hongbin, Likos, Christos N., Locatelli, Emanuele, López-León, Teresa, Machon, Thomas, Micheletti, Cristian ... Žumer, Slobodan (2024). Topology in soft and biological matter. Physics Reports, 1075, 1-137. doi: 10.1016/j.physrep.2024.04.002 |
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2024 Journal Article GridPyM: a Python module to handle grid diagramsBarbensi, Agnese and Celoria, Daniele (2024). GridPyM: a Python module to handle grid diagrams. Journal of Software for Algebra and Geometry, 14 (1), 31-39. doi: 10.2140/jsag.2024.14.31 |
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2023 Journal Article Homology of homologous knotted proteinsBenjamin, Katherine, Mukta, Lamisah, Moryoussef, Gabriel, Uren, Christopher, Harrington, Heather A., Tillmann, Ulrike and Barbensi, Agnese (2023). Homology of homologous knotted proteins. Journal of the Royal Society. Interface, 20 (201) 20220727, 1-8. doi: 10.1098/rsif.2022.0727 |
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2022 Journal Article Double branched covers of knotoidsBarbensi, Agnese, Buck, Dorothy, Harrington, Heather A. and Lackenby, Marc (2022). Double branched covers of knotoids. Communications in Analysis and Geometry, 30 (5), 1007-1057. doi: 10.4310/CAG.2022.v30.n5.a3 |
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2021 Journal Article A topological selection of folding pathways from native states of knotted proteinsBarbensi, Agnese, Yerolemou, Naya, Vipond, Oliver, Mahler, Barbara, Dabrowski-Tumanski, Pawel and Goundaroulis, Dimos (2021). A topological selection of folding pathways from native states of knotted proteins. Symmetry, 13 (9) 1670, 1-17. doi: 10.3390/sym13091670 |
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2021 Journal Article f -distance of knotoids and protein structureBarbensi, Agnese and Goundaroulis, Dimos (2021). f -distance of knotoids and protein structure. Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences, 477 (2246) 20200898, 1-18. doi: 10.1098/rspa.2020.0898 |
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2020 Journal Article The Reidemeister graph is a complete knot invariantBarbensi, Agnese and Celoria, Daniele (2020). The Reidemeister graph is a complete knot invariant. Algebraic and Geometric Topology, 20 (2), 643-698. doi: 10.2140/agt.2020.20.643 |
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2020 Journal Article Grid diagrams as tools to investigate knot spaces and topoisomerase-mediated simplification of DNA topologyBarbensi, Agnese, Celoria, Daniele, Harrington, Heather A., Stasiak, Andrzej and Buck, Dorothy (2020). Grid diagrams as tools to investigate knot spaces and topoisomerase-mediated simplification of DNA topology. Science Advances, 6 (9) eaay1458, 1-8. doi: 10.1126/sciadv.aay1458 |
