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2023 Journal Article Organ-specific expression of genes associated with the UDP-glucose metabolism in sugarcane (Saccharum spp. hybrids)Mason, Patrick J., Hoang, Nam V., Botha, Frederik C., Furtado, Agnelo, Marquardt, Annelie and Henry, Robert J. (2023). Organ-specific expression of genes associated with the UDP-glucose metabolism in sugarcane (Saccharum spp. hybrids). BMC Genomics, 24 (1) 18, 1-18. doi: 10.1186/s12864-023-09124-8 |
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2023 Journal Article Phylogenetic relationships among Australian native citrus species based upon complete chloroplast genomes and single copy nuclear genesNakandala, Upuli, Furtado, Agnelo, Smith, Malcolm W., Williams, Darren C. and Henry, Robert J. (2023). Phylogenetic relationships among Australian native citrus species based upon complete chloroplast genomes and single copy nuclear genes. Tropical Plants, 2 (1) 21, 1-8. doi: 10.48130/tp-2023-0021 |
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2022 Journal Article Variant analysis of grain size related genes in the genus SorghumAnanda, Galaihalage K. S., Norton, Sally L., Barnes, Eve, Furtado, Agnelo, Møller, Birger Lindberg, Gleadow, Roslyn and Henry, Robert J. (2022). Variant analysis of grain size related genes in the genus Sorghum. Genetic Resources and Crop Evolution, 70 (5), 1377-1394. doi: 10.1007/s10722-022-01508-1 |
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2022 Journal Article Gene expression in the developing seed of wild and domesticated riceHasan, Sharmin, Furtado, Agnelo and Henry, Robert (2022). Gene expression in the developing seed of wild and domesticated rice. International Journal of Molecular Sciences, 23 (21) 13351, 1-21. doi: 10.3390/ijms232113351 |
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2022 Journal Article Transcriptome and metabolome integration in sugarcane through culm developmentPerlo, Virginie, Furtado, Agnelo, Botha, Frederik C., Margarido, Gabriel R. A., Hodgson‐Kratky, Katrina, Choudhary, Hemant, Gladden, John, Simmons, Blake and Henry, Robert J. (2022). Transcriptome and metabolome integration in sugarcane through culm development. Food and Energy Security, 11 (4) e421, 1-16. doi: 10.1002/fes3.421 |
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2022 Journal Article A haplotype resolved chromosomal level avocado genome allows analysis of novel avocado genesNath, Onkar, Fletcher, Stephen J., Hayward, Alice, Shaw, Lindsay M., Kharabian Masouleh, Ardashir, Furtado, Agnelo, Henry, Robert J. and Mitter, Neena (2022). A haplotype resolved chromosomal level avocado genome allows analysis of novel avocado genes. Horticulture Research, 9 uhac157, 1-10. doi: 10.1093/hr/uhac157 |
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2022 Journal Article The long read transcriptome of rice (oryza sativa ssp. japonica var. Nipponbare) reveals novel transcriptsHasan, Sharmin, Huang, Lichun, Liu, Qiaoquan, Perlo, Virginie, O'Keeffe, Angela, Margarido, Gabriel Rodrigues Alves, Furtado, Agnelo and Henry, Robert J (2022). The long read transcriptome of rice (oryza sativa ssp. japonica var. Nipponbare) reveals novel transcripts. Rice, 15 (1) 29, 29. doi: 10.1186/s12284-022-00577-1 |
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2022 Journal Article Allele expression biases in mixed-ploid sugarcane accessionsCorrer, Fernando Henrique, Furtado, Agnelo, Franco Garcia, Antonio Augusto, Henry, Robert James and Rodrigues Alves Margarido, Gabriel (2022). Allele expression biases in mixed-ploid sugarcane accessions. Scientific Reports, 12 (1) 8778, 1-10. doi: 10.1038/s41598-022-12725-0 |
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2022 Journal Article Potential of genome editing to capture diversity from Australian wild rice relativesAbdullah, Muhammad, Okemo, Pauline, Furtado, Agnelo and Henry, Robert (2022). Potential of genome editing to capture diversity from Australian wild rice relatives. Frontiers in Genome Editing, 4 875243. doi: 10.3389/fgeed.2022.875243 |
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2022 Journal Article Reticulate evolution in AA-genome wild rice in AustraliaHasan, Sharmin, Furtado, Agnelo and Henry, Robert (2022). Reticulate evolution in AA-genome wild rice in Australia. Frontiers in Plant Science, 13 767635, 767635. doi: 10.3389/fpls.2022.767635 |
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2022 Journal Article Transcriptome changes in the developing sugarcane culm associated with high yield and early-season high sugar contentPerlo, Virginie, Margarido, Gabriel R. A., Botha, Frederik C., Furtado, Agnelo, Hodgson-Kratky, Katrina, Correr, Fernando H. and Henry, Robert J. (2022). Transcriptome changes in the developing sugarcane culm associated with high yield and early-season high sugar content. Theoretical and Applied Genetics, 135 (5), 1619-1636. doi: 10.1007/s00122-022-04058-3 |
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2022 Journal Article Transcript profiles of wild and domesticated sorghum under water-stressed conditions and the differential impact on dhurrin metabolismAnanda, Galaihalage K. S., Norton, Sally L., Blomstedt, Cecilia, Furtado, Agnelo, Møller, Birger Lindberg, Gleadow, Roslyn and Henry, Robert J. (2022). Transcript profiles of wild and domesticated sorghum under water-stressed conditions and the differential impact on dhurrin metabolism. Planta, 255 (2) 51, 51. doi: 10.1007/s00425-022-03831-4 |
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2022 Journal Article A comprehensive high-quality DNA and RNA extraction protocol for a range of cultivars and tissue types of the woody crop avocadoNath, Onkar, Fletcher, Stephen J., Hayward, Alice, Shaw, Lindsay M., Agarwal, Rimjhim, Furtado, Agnelo, Henry, Robert J. and Mitter, Neena (2022). A comprehensive high-quality DNA and RNA extraction protocol for a range of cultivars and tissue types of the woody crop avocado. Plants, 11 (3) 242, 242. doi: 10.3390/plants11030242 |
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2022 Journal Article Cyanogenesis in the Sorghum Genus: From Genotype to PhenotypeCowan, Max, Møller, Birger Lindberg, Norton, Sally, Knudsen, Camilla, Crocoll, Christoph, Furtado, Agnelo, Henry, Robert, Blomstedt, Cecilia and Gleadow, Roslyn M. (2022). Cyanogenesis in the Sorghum Genus: From Genotype to Phenotype. Genes, 13 (1) 140, 1-17. doi: 10.3390/genes13010140 |
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2022 Book Chapter The use of genome sequencing to improve crops for tropical agricultureOkemo, Pauline, Wijesundra, Upendra, Nakandala, Upuli, Ananda, Galaihalage K.S., Vanambathina, Prameela, Hasan, Sharmin, Abdulla, Muhammad, Sharma, Priyanka, Manatunga, Sachini, Pazhany, Adhini, Kharabian Masouleh, Ardy, Nath, Onkar, Mitter, Neena, Furtado, Agnelo and Henry, Robert J. (2022). The use of genome sequencing to improve crops for tropical agriculture. Next-generation sequencing and agriculture. (pp. 59-91) edited by Philipp E. Bayer and David Edwards. Wallingford, Oxfordshire, United Kingdom: CAB International. doi: 10.1079/9781789247848.0004 |
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2022 Journal Article Comparison of the root, leaf and internode transcriptomes in sugarcane (Saccharum spp. hybrids)Mason, Patrick J., Hoang, Nam V., Botha, Frederik C., Furtado, Agnelo, Marquardt, Annelie and Henry, Robert J. (2022). Comparison of the root, leaf and internode transcriptomes in sugarcane (Saccharum spp. hybrids). Current Research in Biotechnology, 4, 167-178. doi: 10.1016/j.crbiot.2022.02.005 |
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2021 Journal Article Limited allele-specific gene expression in highly polyploid sugarcaneRodrigues Alves Margarido, Gabriel, Correr, Fernando Henrique, Furtado, Agnelo, Botha, Frederik C. and Henry, Robert J. (2021). Limited allele-specific gene expression in highly polyploid sugarcane. Genome Research, 32 (2), 297-308. doi: 10.1101/gr.275904.121 |
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2021 Journal Article The genome of the endangered Macadamia jansenii displays little diversity but represents an important genetic resource for plant breedingSharma, Priyanka, Murigneux, Valentine, Haimovitz, Jasmine, Nock, Catherine J., Tian, Wei, Kharabian Masouleh, Ardashir, Topp, Bruce, Alam, Mobashwer, Furtado, Agnelo and Henry, Robert J. (2021). The genome of the endangered Macadamia jansenii displays little diversity but represents an important genetic resource for plant breeding. Plant Direct, 5 (12) e364, e364. doi: 10.1002/pld3.364 |
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2021 Journal Article Single kernel sorting of high and normal oleic acid peanuts using near infrared spectroscopyO’Connor, Daniel J., Meder, Roger, Furtado, Angelo, Henry, Robert J., Wright, Graeme C. and Rachaputi, Rao C.N. (2021). Single kernel sorting of high and normal oleic acid peanuts using near infrared spectroscopy. Journal of Near Infrared Spectroscopy, 29 (6), 366-370. doi: 10.1177/09670335211053502 |
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2021 Journal Article Denovo chromosome level assembly of a plant genome from long read sequence dataSharma, Priyanka, Kharabian Masouleh, Ardashir, Topp, Bruce, Furtado, Agnelo and Henry, Robert J. (2021). Denovo chromosome level assembly of a plant genome from long read sequence data. The Plant Journal, 109 (3), 727-736. doi: 10.1111/tpj.15583 |
