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2025 Journal Article The genomes of the most diverse AA genome rice species provide a resource for rice improvement and studies of rice evolution and domesticationAbdullah, Muhammad, Furtado, Agnelo, Kharabian Masouleh, Ardashir, Okemo, Pauline and Henry, Robert (2025). The genomes of the most diverse AA genome rice species provide a resource for rice improvement and studies of rice evolution and domestication. BMC Genomics, 26 (1) 54, 1-15. doi: 10.1186/s12864-025-11246-0 |
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2024 Journal Article Centromeres are hotspots for chromosomal inversions and breeding traits in mangoWilkinson, Melanie J., McLay, Kathleen, Kainer, David, Elphinstone, Cassandra, Dillon, Natalie L., Webb, Matthew, Wijesundara, Upendra K., Ali, Asjad, Bally, Ian S. E., Munyengwa, Norman, Furtado, Agnelo, Henry, Robert J., Hardner, Craig M. and Ortiz‐Barrientos, Daniel (2024). Centromeres are hotspots for chromosomal inversions and breeding traits in mango. New Phytologist, 245 (2), 899-913. doi: 10.1111/nph.20252 |
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2024 Journal Article Analysis of phylogenetic relationships in Macadamia shows evidence of extensive reticulate evolutionManatunga, Sachini Lakmini, Furtado, Agnelo, Topp, Bruce, Alam, Mobashwer, Mason, Patrick J., Kharabian-Masouleh, Ardashir and Henry, Robert J. (2024). Analysis of phylogenetic relationships in Macadamia shows evidence of extensive reticulate evolution. Frontiers in Plant Science, 15 1394244. doi: 10.3389/fpls.2024.1394244 |
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2024 Journal Article The genomes of Australian wild limesNakandala, Upuli, Furtado, Agnelo, Kharabian Masouleh, Ardashir, Smith, Malcolm W., Mason, Patrick, Williams, Darren C. and Henry, Robert J. (2024). The genomes of Australian wild limes. Plant Molecular Biology, 114 (5) 102, 102. doi: 10.1007/s11103-024-01502-4 |
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2024 Journal Article Harnessing the Power of an Extensive EMS‐Induced Sorghum Population for Rapid Crop ImprovementMason, Patrick John, Blaakmeer, Anko, Furtado, Agnelo, Stuart, Peter Norman, Nomula, Rajesh, Bjarnholt, Nanna, Sørensen, Mette, Koleva, Donka Teneva, Pedas, Pai Rosager, Knudsen, Søren, Møller, Birger Lindberg, Skadhauge, Birgitte and Henry, Robert James (2024). Harnessing the Power of an Extensive EMS‐Induced Sorghum Population for Rapid Crop Improvement. Physiologia Plantarum, 176 (4) e14449, 1-9. doi: 10.1111/ppl.14449 |
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2024 Journal Article A chromosome‐level genome of mango exclusively from long‐read sequence dataWijesundara, Upendra Kumari, Masouleh, Ardashir Kharabian, Furtado, Agnelo, Dillon, Natalie L. and Henry, Robert J. (2024). A chromosome‐level genome of mango exclusively from long‐read sequence data. The Plant Genome, 17 (2) e20441, 1-13. doi: 10.1002/tpg2.20441 |
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2024 Journal Article The genome of Citrus australasica reveals disease resistance and other species specific genesNakandala, Upuli, Furtado, Agnelo, Masouleh, Ardashir Kharabian, Smith, Malcolm W., Williams, Darren C. and Henry, Robert J. (2024). The genome of Citrus australasica reveals disease resistance and other species specific genes. BMC Plant Biology, 24 (1) 260, 260. doi: 10.1186/s12870-024-04988-8 |
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2024 Journal Article A multi-cell model for the C4 photosynthetic pathway in developing wheat grains based upon tissue-specific transcriptome dataRangan, Parimalan, Furtado, Agnelo, Chinnusamy, Viswanathan and Henry, Robert (2024). A multi-cell model for the C4 photosynthetic pathway in developing wheat grains based upon tissue-specific transcriptome data. BioSystems, 238 105195, 105195. doi: 10.1016/j.biosystems.2024.105195 |
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2024 Journal Article The complex polyploid genome architecture of sugarcaneHealey, A. L., Garsmeur, O., Lovell, J. T., Shengquiang, S., Sreedasyam, A., Jenkins, J., Plott, C. B., Piperidis, N., Pompidor, N., Llaca, V., Metcalfe, C. J., Doležel, J., Cápal, P., Carlson, J. W., Hoarau, J. Y., Hervouet, C., Zini, C., Dievart, A., Lipzen, A., Williams, M., Boston, L. B., Webber, J., Keymanesh, K., Tejomurthula, S., Rajasekar, S., Suchecki, R., Furtado, A., May, G., Parakkal, P. ... D’Hont, A. (2024). The complex polyploid genome architecture of sugarcane. Nature, 628 (8009), 1-7. doi: 10.1038/s41586-024-07231-4 |
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2024 Journal Article Differentially expressed genes in Jojoba (Simmondsia chinensis) when subjected to water-stressAl-Dossary, Othman, Furtado, Agnelo, Kharabian Masouleh, Ardashir, Alsubaie, Bader, Al-Mssallem, Ibrahim and Henry, Robert J. (2024). Differentially expressed genes in Jojoba (Simmondsia chinensis) when subjected to water-stress. Current Plant Biology, 37 100311, 100311. doi: 10.1016/j.cpb.2023.100311 |
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2024 Journal Article Phylogenetic relationships in the genus Mangifera based on whole chloroplast genome and nuclear genome sequencesWijesundara, Upendra Kumari, Furtado, Agnelo, Dillon, Natalie L., Masouleh, Ardashir Kharabian and Henry, Robert J (2024). Phylogenetic relationships in the genus Mangifera based on whole chloroplast genome and nuclear genome sequences. Tropical Plants, 3 (1) e034. doi: 10.48130/tp-0024-0031 |
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2024 Journal Article An improved haplotype resolved genome reveals more rice genesAbdullah, Muhammad, Furtado, Agnelo, Masouleh, Ardashir Kharabian, Okemo, Pauline and Henry, Robert (2024). An improved haplotype resolved genome reveals more rice genes. Tropical Plants, 3 (1) e009. doi: 10.48130/tp-0024-0007 |
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2024 Journal Article Genome sequences to support conservation and breeding of <i>Macadamia</i>Sharma, Priyanka, Masouleh, Ardashir Kharabian, Constantin, Lena, Topp, Bruce, Furtado, Agnelo and Henry, Robert J. (2024). Genome sequences to support conservation and breeding of <i>Macadamia</i>. Tropical Plants e035, 1-11. doi: 10.48130/tp-0024-0029 |
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2023 Journal Article Long read sequencing to reveal the full complexity of a plant transcriptome by targeting both standard and long workflowsAl-Dossary, Othman, Furtado, Agnelo, KharabianMasouleh, Ardashir, Alsubaie, Bader, Al-Mssallem, Ibrahim and Henry, Robert J. (2023). Long read sequencing to reveal the full complexity of a plant transcriptome by targeting both standard and long workflows. Plant Methods, 19 (1) 112. doi: 10.1186/s13007-023-01091-1 |
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2023 Journal Article Loss of plastid ndh genes in an autotropic desert plantKharabian-Masouleh, Ardashir, Furtado, Agnelo, Alsubaie, Bader, Al-Dossary, Othman, Wu, Alex, Al-Mssalem, Ibrahim and Henry, Robert (2023). Loss of plastid ndh genes in an autotropic desert plant. Computational and Structural Biotechnology Journal, 21, 5016-5027. doi: 10.1016/j.csbj.2023.10.023 |
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2023 Journal Article Highly sex specific gene expression in JojobaAlsubaie, Bader, Kharabian-Masouleh, Ardashir, Furtado, Agnelo, Al-Dossary, Othman, Al-Mssallem, Ibrahim and Henry, Robert J. (2023). Highly sex specific gene expression in Jojoba. BMC Plant Biology, 23 (1) 440, 440. doi: 10.1186/s12870-023-04444-z |
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2023 Journal Article Long read transcriptome sequencing of a sugarcane hybrid and its progenitors, Saccharum officinarum and S. spontaneumThirugnanasambandam, Prathima Perumal, Singode, Avinash, Thalambedu, Lakshmi Pathy, Athiappan, Selvi, Krishnasamy, Mohanraj, Purakkal, Sobhakumari Valiya, Govind, Hemaprabha, Furtado, Agnelo and Henry, Robert (2023). Long read transcriptome sequencing of a sugarcane hybrid and its progenitors, Saccharum officinarum and S. spontaneum. Frontiers in Plant Science, 14 1199748, 1-15. doi: 10.3389/fpls.2023.1199748 |
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2023 Journal Article Haplotype resolved chromosome level genome assembly of Citrus australis reveals disease resistance and other citrus specific genesNakandala, Upuli, Masouleh, Ardashir Kharabian, Smith, Malcolm W., Furtado, Agnelo, Mason, Patrick, Constantin, Lena and Henry, Robert J. (2023). Haplotype resolved chromosome level genome assembly of Citrus australis reveals disease resistance and other citrus specific genes. Horticulture Research, 10 (05) uhad058, 1-14. doi: 10.1093/hr/uhad058 |
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2023 Journal Article Analysis of domestication loci in wild rice populationsHasan, Sharmin, Furtado, Agnelo and Henry, Robert (2023). Analysis of domestication loci in wild rice populations. Plants, 12 (3) 489, 1-14. doi: 10.3390/plants12030489 |
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2023 Journal Article Organ-specific expression of genes associated with the UDP-glucose metabolism in sugarcane (Saccharum spp. hybrids)Mason, Patrick J., Hoang, Nam V., Botha, Frederik C., Furtado, Agnelo, Marquardt, Annelie and Henry, Robert J. (2023). Organ-specific expression of genes associated with the UDP-glucose metabolism in sugarcane (Saccharum spp. hybrids). BMC Genomics, 24 (1) 18, 1-18. doi: 10.1186/s12864-023-09124-8 |
