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2015 Journal Article Ubiquitous L1 mosaicism in hippocampal neuronsUpton, Kyle R., Gerhardt, Daniel J., Jesuadian, J. Samuel, Richardson, Sandra R., Sanchez-Luque, Francisco J., Bodea, Gabriela O., Ewing, Adam D., Salvador-Palomeque, Carmen, van der Knaap, Mario S., Brennan, Paul M., Vanderver, Adeline and Faulkner, Geoffrey J. (2015). Ubiquitous L1 mosaicism in hippocampal neurons. Cell, 161 (2), 228-239. doi: 10.1016/j.cell.2015.03.026 |
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2014 Journal Article Lying up a nation: Zora neale hurston and the local uses of diasporaEwing, Adam (2014). Lying up a nation: Zora neale hurston and the local uses of diaspora. Callaloo, 37 (1), 130-147. doi: 10.1353/cal.2014.0015 |
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2014 Journal Article An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposonsJacobs, Frank M. J., Greenberg, David, Ngan Nguyen, Haeussler, Maximilian, Ewing, Adam D., Katzman, Sol, Paten, Benedict, Salama, Sofie R. and Haussler, David (2014). An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposons. Nature, 516 (7530), 242-245. doi: 10.1038/nature13760 |
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2014 Journal Article RADIA: RNA and DNA integrated analysis for somatic mutation detectionRadenbaugh, Amie J., Ma, Singer, Ewing, Adam, Stuart, Joshua M., Collisson, Eric A., Zhu, Jingchun and Haussler, David (2014). RADIA: RNA and DNA integrated analysis for somatic mutation detection. PLoS ONE, 9 (11) e111516, e111516.1-e111516.11. doi: 10.1371/journal.pone.0111516 |
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2014 Journal Article Global optimization of somatic variant identification in cancer genomes with a global community challengeBoutros, Paul C., Ewing, Adam D., Ellrott, Kyle, Norman, Thea C., Dang, Kristen K., Hu, Yin, Kellen, Michael R., Suver, Christine, Bare, J. Christopher, Stein, Lincoln D., Spellman, Paul T., Stolovitzky, Gustavo, Friend, Stephen H., Margolin, Adam A. and Stuart, Joshua M. (2014). Global optimization of somatic variant identification in cancer genomes with a global community challenge. Nature Genetics, 46 (4), 318-319. doi: 10.1038/ng.2932 |
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2013 Journal Article Caribbean labour politics in the age of Garvey, 1918-1938Ewing, Adam (2013). Caribbean labour politics in the age of Garvey, 1918-1938. Race and Class, 55 (1), 23-45. doi: 10.1177/0306396813486586 |
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2013 Journal Article Retrotransposition of gene transcripts leads to structural variation in mammalian genomesEwing, Adam D., Ballinger, Tracy J., Earl, Dent, Harris, Christopher C., Ding, Li, Wilson, Richard K. and Haussler, David (2013). Retrotransposition of gene transcripts leads to structural variation in mammalian genomes. Genome Biology, 14 (3) R22. doi: 10.1186/gb-2013-14-3-r22 |
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2013 Journal Article Enrichment of processed pseudogene transcripts in L1-ribonucleoprotein particlesMandal, Prabhat K., Ewing, Adam D., Hancks, Dustin C. and Kazazian, Haig H., Jr. (2013). Enrichment of processed pseudogene transcripts in L1-ribonucleoprotein particles. Human Molecular Genetics, 22 (18) ddt225, 3730-3748. doi: 10.1093/hmg/ddt225 |
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2012 Journal Article Extensive somatic L1 retrotransposition in colorectal tumorsSolyom, Szilvia, Ewing, Adam D., Rahrmann, Eric P., Doucet, Tara, Nelson, Heather H., Burns, Michael B., Harris, Reuben S., Sigmon, David F., Casella, Alex, Erlanger, Bracha, Wheelan, Sarah, Upton, Kyle R., Shukla, Ruchi, Faulkner, Geoffrey J., Largaespada, David A. and Kazazian, Haig H. (2012). Extensive somatic L1 retrotransposition in colorectal tumors. Genome Research, 22 (12), 2328-2338. doi: 10.1101/gr.145235.112 |
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2012 Journal Article Pathogenic orphan transduction created by a nonreference LINE-1 retrotransposonSolyom, Szilvia, Ewing, Adam D., Hancks, Dustin C., Takeshima, Yasuhiro, Awano, Hiroyuki, Matsuo, Masafumi and Kazazian, Haig H., Jr. (2012). Pathogenic orphan transduction created by a nonreference LINE-1 retrotransposon. Human Mutation, 33 (2), 369-371. doi: 10.1002/humu.21663 |
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2011 Journal Article Whole-genome resequencing allows detection of many rare LINE-1 insertion alleles in humansEwing, Adam D. and Kazazian, Haig H., Jr. (2011). Whole-genome resequencing allows detection of many rare LINE-1 insertion alleles in humans. Genome Research, 21 (6), 985-990. doi: 10.1101/gr.114777.110 |
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2010 Journal Article High-throughput sequencing reveals extensive variation in human-specific L1 content in individual human genomesEwing, Adam D. and Kazazian, Haig H., Jr. (2010). High-throughput sequencing reveals extensive variation in human-specific L1 content in individual human genomes. Genome Research, 20 (9), 1262-1270. doi: 10.1101/gr.106419.110 |
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2009 Journal Article Exon-trapping mediated by the human retrotransposon SVAHancks, Dustin C., Ewing, Adam D., Chen, Jesse E., Tokunaga, Katsushi and Kazazian, Haig H. (2009). Exon-trapping mediated by the human retrotransposon SVA. Genome Research, 19 (11), 1983-1991. doi: 10.1101/gr.093153.109 |
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2009 Journal Article Genome sequences of three agrobacterium biovars help elucidate the evolution of multichromosome genomes in bacteriaSlater, Steven C., Goldman, Barry S., Goodner, Brad, Setubal, Joao C., Farrand, Stephen K., Nester, Eugene W., Burr, Thomas J., Banta, Lois, Dickerman, Allan W., Paulsen, Ian, Otten, Leon, Suen, Garret, Welch, Roy, Almeida, Nalvo F., Arnold, Frank, Burton, Oliver T., Du, Zijin, Ewing, Adam, Godsy, Eric, Heisel, Sara, Houmiel, Kathryn L., Jhaveri, Jinal, Lu, Jing, Miller, Nancy M., Norton, Stacie, Chen, Qiang, Phoolcharoen, Waranyoo, Ohlin, Victoria, Ondrusek, Dan ... Wood, Derek W. (2009). Genome sequences of three agrobacterium biovars help elucidate the evolution of multichromosome genomes in bacteria. Journal of Bacteriology, 191 (8), 2501-2511. doi: 10.1128/JB.01779-08 |
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2009 Journal Article Track roller and idler design improvement using DFSSAwad, Mahmoud I., Ewing, Adam, Sedlak, George, Yi, Tong and Shanshal, Yassir (2009). Track roller and idler design improvement using DFSS. International Journal of Six Sigma and Competitive Advantage, 5 (1), 29-41. doi: 10.1504/IJSSCA.2009.024213 |
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2006 Journal Article Living with genome instability: The adaptation of phytoplasmas to diverse environments of their insect and plant hostsBai, Xiaodong, Zhang, Jianhua, Ewing, Adam, Miller, Sally A., Radek, Agnes Jancso, Shevchenko, Dmitriy V., Tsukerman, Kiryl, Walunas, Theresa, Lapidus, Alla, Campbell, John W. and Hogenhout, Saskia A. (2006). Living with genome instability: The adaptation of phytoplasmas to diverse environments of their insect and plant hosts. Journal of Bacteriology, 188 (10), 3682-3696. doi: 10.1128/JB.188.10.3682-3696.2006 |
