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2025 Journal Article Microbial safety of black soldier fly larvae (Hermetia illucens) reared on food waste streamsAlagappan, Shanmugam, Dong, Anran, Hoffman, Louwrens, Cozzolino, Daniel, Mantilla, Sandra Olarte, James, Peter, Yarger, Olympia and Mikkelsen, Deirdre (2025). Microbial safety of black soldier fly larvae (Hermetia illucens) reared on food waste streams. Waste Management, 194, 221-227. doi: 10.1016/j.wasman.2025.01.019 |
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2025 Journal Article Molecular epidemiological characteristics of Staphylococcus pseudintermedius, Staphylococcus coagulans, and coagulase-negative staphylococci cultured from clinical canine skin and ear samples in QueenslandHorsman, Sara, Zaugg, Julian, Meler, Erika, Mikkelsen, Deirdre, Soares Magalhães, Ricardo J. and Gibson, Justine S. (2025). Molecular epidemiological characteristics of Staphylococcus pseudintermedius, Staphylococcus coagulans, and coagulase-negative staphylococci cultured from clinical canine skin and ear samples in Queensland. Antibiotics, 14 (1) 80, 1-25. doi: 10.3390/antibiotics14010080 |
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2025 Journal Article Characterization and comparison of fecal microbiota in horses with pituitary pars intermedia dysfunction and age-matched controlsWang, Wenqing, Gibson, Justine, Horsman, Sara, Mikkelsen, Deirdre and Bertin, François-René (2025). Characterization and comparison of fecal microbiota in horses with pituitary pars intermedia dysfunction and age-matched controls. Journal of Veterinary Internal Medicine, 39 (1) e17288, 1-11. doi: 10.1111/jvim.17288 |
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2025 Journal Article Factors affecting plant food particle behaviour during in vitro colonic microbial fermentationYao, Hong, Flanagan, Bernadine M., Williams, Barbara A., Mikkelsen, Deirdre and Gidley, Michael J. (2025). Factors affecting plant food particle behaviour during in vitro colonic microbial fermentation. Trends in Food Science and Technology, 155 104802, 1-9. doi: 10.1016/j.tifs.2024.104802 |
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2024 Journal Article Design characteristics of integrated surveillance of antimicrobial resistance at the human, animal, and environment interfacesHau, Erda Eni Rame, Sly, Peter D., Mikkelsen, Deirdre, Taneja, Neelam, Penjor, Kinley, Ryu, Sukhyun, Donner, Erica, Mollinger, Joanne, Ferreira, Jorge Pinto, Schipp, Mark and Soares Magalhaes, Ricardo J. (2024). Design characteristics of integrated surveillance of antimicrobial resistance at the human, animal, and environment interfaces. CABI Reviews, 19 (1). doi: 10.1079/cabireviews.2024.0047 |
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2024 Journal Article Impact of pectin and alginate gel particle size and concentration on in vitro gut fermentationLi, Anqi, Shewan, Heather M., Flanagan, Bernadine M., Williams, Barbara A., Mikkelsen, Deirdre and Gidley, Michael J. (2024). Impact of pectin and alginate gel particle size and concentration on in vitro gut fermentation. Food Hydrocolloids, 160 110808, 110808. doi: 10.1016/j.foodhyd.2024.110808 |
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2024 Journal Article Effect of larval instar and post‐harvest treatments on heavy metals in <scp>BSFL</scp> and frass reared on commercial food waste streamsAlagappan, Shanmugam, Mallard, Sam, Cozzolino, Daniel, Mikkelsen, Deirdre, James, Peter, Mantilla, Sandra Olarte, Yarger, Olympia and Hoffman, Louwrens (2024). Effect of larval instar and post‐harvest treatments on heavy metals in BSFL and frass reared on commercial food waste streams. International Journal of Food Science & Technology, 59 (11), 8214-8223. doi: 10.1111/ijfs.17511 |
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2024 Journal Article Differential effects of pectin-based dietary fibre type and gut microbiota composition on in vitro fermentation outcomesYao, Hong, Flanagan, Bernadine M., Williams, Barbara A., Wu, Xiyang, Mikkelsen, Deirdre and Gidley, Michael J. (2024). Differential effects of pectin-based dietary fibre type and gut microbiota composition on in vitro fermentation outcomes. Carbohydrate Polymers, 339 122284, 122284. doi: 10.1016/j.carbpol.2024.122284 |
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2024 Journal Article Faecal bacterial communities differ amongst discrete foraging populations of dugongs along the east Australian coastMikkelsen, Deirdre, McGowan, Alexandra M, Gibson, Justine S, Lanyon, Janet M, Horsman, Sara and Seddon, Jennifer M (2024). Faecal bacterial communities differ amongst discrete foraging populations of dugongs along the east Australian coast. FEMS Microbiology Ecology, 100 (6) fiae051. doi: 10.1093/femsec/fiae051 |
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2024 Journal Article Monitoring compositional changes in black soldier fly larvae after processing (drying and blanching) using near infrared spectroscopyCozzolino, D., Alagappan, S., Ochoa, M., Zhang, S., Yarger, O., Hoffman, L.C. and Mikkelsen, D. (2024). Monitoring compositional changes in black soldier fly larvae after processing (drying and blanching) using near infrared spectroscopy. Infrared Physics & Technology, 138 105212, 1-7. doi: 10.1016/j.infrared.2024.105212 |
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2024 Journal Article Near-infrared spectroscopy (NIRS) for monitoring the nutritional composition of black soldier fly larvae (BSFL) and frassAlagappan, Shanmugam, Hoffman, Louwrens, Mikkelsen, Deirdre, Olarte Mantilla, Sandra, James, Peter, Yarger, Olympia and Cozzolino, Daniel (2024). Near-infrared spectroscopy (NIRS) for monitoring the nutritional composition of black soldier fly larvae (BSFL) and frass. Journal of the Science of Food and Agriculture, 104 (3), 1487-1496. doi: 10.1002/jsfa.13044 |
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2024 Journal Article Biomass attachment and microbiota shifts during porcine faecal in vitro fermentation of almond and macadamia nuts differing in particle sizesBermudez, Cindy, Yao, Hong, Widaningrum, Williams, Barbara A., Flanagan, Bernadine M., Gidley, Michael J. and Mikkelsen, Deirdre (2024). Biomass attachment and microbiota shifts during porcine faecal in vitro fermentation of almond and macadamia nuts differing in particle sizes. Food and Function, 15 (5), 2406-2421. doi: 10.1039/d3fo03612j |
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2024 Journal Article In vitro fermentation characteristics of fruit and vegetable juicing wastes using human fecal inoculum are determined by cell wall architectureWidaningrum, Flanagan, Bernadine M., Williams, Barbara A., Sonni, Francesca, Mikkelsen, Deirdre and Gidley, Michael J. (2024). In vitro fermentation characteristics of fruit and vegetable juicing wastes using human fecal inoculum are determined by cell wall architecture. Food Hydrocolloids, 146 (Part A) 109205, 109205. doi: 10.1016/j.foodhyd.2023.109205 |
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2023 Journal Article Enzymatic arabinose depletion of wheat arabinoxylan regulates in vitro fermentation profiles and potential microbial degradersYao, Hong, Flanagan, Bernadine M., Williams, Barbara A., Ismail, Munirah, Ersya, Astrada Dyna, Gidley, Michael J. and Mikkelsen, Deirdre (2023). Enzymatic arabinose depletion of wheat arabinoxylan regulates in vitro fermentation profiles and potential microbial degraders. Food Hydrocolloids, 142 108743, 1-10. doi: 10.1016/j.foodhyd.2023.108743 |
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2023 Journal Article Near infrared spectroscopy for prediction of yeast and mould counts in black soldier fly larvae, feed and frass: a proof of conceptAlagappan, Shanmugam, Dong, Anran, Mikkelsen, Deirdre, Hoffman, Louwrens C., Mantilla, Sandra Milena Olarte, James, Peter, Yarger, Olympia and Cozzolino, Daniel (2023). Near infrared spectroscopy for prediction of yeast and mould counts in black soldier fly larvae, feed and frass: a proof of concept. Sensors, 23 (15) 6946, 1-13. doi: 10.3390/s23156946 |
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2023 Journal Article Composition and functional profiles of human faecal microbiota fermenting plant-based food particles are related to water-holding capacity more than particle sizeYao, Hong, Williams, Barbara A., Mikkelsen, Deirdre, Flanagan, Bernadine M. and Gidley, Michael J. (2023). Composition and functional profiles of human faecal microbiota fermenting plant-based food particles are related to water-holding capacity more than particle size. Food Hydrocolloids, 141 108714, 1-11. doi: 10.1016/j.foodhyd.2023.108714 |
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2023 Journal Article Bacterial physiology highlighted by the δ13C fractionation of bacteriohopanetetrol isomersSchwartz-Narbonne, Rachel, Schaeffer, Philippe, Lengger, Sabine K., Blewett, Jerome, Martin Jones, D., Motsch, Estelle, Crombie, Andrew, Jetten, Mike S.-M., Mikkelsen, Deirdre, Normand, Philippe, Nuijten, Guylaine H.L., Pancost, Richard D. and Rush, Darci (2023). Bacterial physiology highlighted by the δ13C fractionation of bacteriohopanetetrol isomers. Organic Geochemistry, 181 104617, 104617. doi: 10.1016/j.orggeochem.2023.104617 |
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2023 Journal Article Nasal microbiota profiles in shelter dogs with dermatological conditions carrying methicillin-resistant and methicillin-sensitive Staphylococcus speciesHorsman, Sara, Meler, Erika, Mikkelsen, Deirdre, Mallyon, John, Yao, Hong, Soares Magalhães, Ricardo J. and Gibson, Justine S. (2023). Nasal microbiota profiles in shelter dogs with dermatological conditions carrying methicillin-resistant and methicillin-sensitive Staphylococcus species. Scientific Reports, 13 (1) 4844, 4844. doi: 10.1038/s41598-023-31385-2 |
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2023 Journal Article Hemicellulose-bacterial cellulose ribbon interactions affect the anisotropic mechanical behaviour of bacterial cellulose hydrogelsChen, Si-Qian, Lopez-Sanchez, Patricia, Mikkelsen, Deirdre, Martinez-Sanz, Marta, Li, Zhaofeng, Zhang, Shuyan, Gilbert, Elliot P., Li, Lin and Gidley, Michael J. (2023). Hemicellulose-bacterial cellulose ribbon interactions affect the anisotropic mechanical behaviour of bacterial cellulose hydrogels. Food Hydrocolloids, 136 108283, 1-9. doi: 10.1016/j.foodhyd.2022.108283 |
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2023 Journal Article Lactate and buyrate proportions, methanogen growth and gas production during in vitro dietary fibre fermentation all depend on fibre concentrationYao, Hong, Flanagan, Bernadine M., Williams, Barbara A., Mikkelsen, Deirdre and Gidley, Michael J. (2023). Lactate and buyrate proportions, methanogen growth and gas production during in vitro dietary fibre fermentation all depend on fibre concentration. Food Hydrocolloids, 134 108061, 1-11. doi: 10.1016/j.foodhyd.2022.108061 |
