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2025 Journal Article The biofuel producing legume tree, Pongamia pinnata, offers strong potential for carbon sequestrationChen, A., Scott, P., Gresshoff, P. M. and Ferguson, B. J. (2025). The biofuel producing legume tree, Pongamia pinnata, offers strong potential for carbon sequestration. doi: 10.1101/2025.06.04.657758 |
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2025 Journal Article De novo long-read assembly and annotation for genomes of two cotton-associated Fusarium oxysporum isolatesGardiner, Donald M., Aitken, Elizabeth A. B., van Dam, Peter, Le, Duy P., Smith, Linda J. and Chen, Andrew (2025). De novo long-read assembly and annotation for genomes of two cotton-associated Fusarium oxysporum isolates. Australasian Plant Pathology, 1-10. doi: 10.1007/s13313-025-01057-y |
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2025 Journal Article Long-read draft genome sequences of two Fusarium oxysporum f. sp. cubense isolates from banana (Musa spp.)Sun, Jiaman, Zhang, Jinzhong, Gardiner, Donald M., van Dam, Peter, Fu, Gang, Ferguson, Brett J., Aitken, Elizabeth A. B. and Chen, Andrew (2025). Long-read draft genome sequences of two Fusarium oxysporum f. sp. cubense isolates from banana (Musa spp.). Journal of Fungi, 11 (6) 421, 1-14. doi: 10.3390/jof11060421 |
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2024 Journal Article Toward marker-assisted selection in breeding for Fusarium wilt tropical race-4 type resistant bananasFerreira, Claudia Fortes, Chen, Andrew, Aitken, Elizabeth A. B., Swennen, Rony, Uwimana, Brigitte, Rocha, Anelita de Jesus, Soares, Julianna Matos da Silva, Ramos, Andresa Priscila de Souza and Amorim, Edson Perito (2024). Toward marker-assisted selection in breeding for Fusarium wilt tropical race-4 type resistant bananas. Journal of Fungi, 10 (12) 839, 1-10. doi: 10.3390/jof10120839 |
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2024 Journal Article Histological dissection of fusarium-banana interaction using GFP-tagged subtropical race 4 strain of Fusarium oxysporum f. sp. cubense on banana cultivars with differing levels of resistanceChen, Andrew, Chou, Ting-Yan, Chen, Yi, Fallatah, Sumayyah M. A., Anderson, Jay, Sun, Jiaman, Cosgrove, Harry, Gao, Siyuan, Ferguson, Brett J., Soper, Amelie, Gardiner, Donald M. and Aitken, Elizabeth A. B. (2024). Histological dissection of fusarium-banana interaction using GFP-tagged subtropical race 4 strain of Fusarium oxysporum f. sp. cubense on banana cultivars with differing levels of resistance. Microorganisms, 12 (12) 2472, 1-21. doi: 10.3390/microorganisms12122472 |
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2024 Journal Article Assessing the pathogenicity of Berkeleyomyces rouxiae and Fusarium oxysporum f. sp. vasinfectum on cotton (Gossypium hirsutum) using a rapid and robust seedling screening methodChen, Andrew, Le, Duy P., Smith, Linda J., Kafle, Dinesh, Aitken, Elizabeth A. B. and Gardiner, Donald M. (2024). Assessing the pathogenicity of Berkeleyomyces rouxiae and Fusarium oxysporum f. sp. vasinfectum on cotton (Gossypium hirsutum) using a rapid and robust seedling screening method. Journal of Fungi, 10 (10) 715, 1-21. doi: 10.3390/jof10100715 |
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2024 Journal Article Fluorescently tagged Verticillium dahliae to understand the infection process on cotton (Gossypium hirsutum) and weed plant speciesChen, Andrew, Morrison, Sabrina, Gregson, Aphrika, Le, Duy P., Urquhart, Andrew S., Smith, Linda J., Aitken, Elizabeth A. B. and Gardiner, Donald M. (2024). Fluorescently tagged Verticillium dahliae to understand the infection process on cotton (Gossypium hirsutum) and weed plant species. Pathogens, 13 (6) 442, 1-21. doi: 10.3390/pathogens13060442 |
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2023 Journal Article Impact of inoculum density of Fusarium oxysporum f. sp. zingiberi on symptomatic appearances and yield of ginger (Zingiber officinale Roscoe)Matthews, Andrea, Muthukumar, Sharan P. T., Hamill, Sharon, Aitken, Elizabeth A. B. and Chen, Andrew (2023). Impact of inoculum density of Fusarium oxysporum f. sp. zingiberi on symptomatic appearances and yield of ginger (Zingiber officinale Roscoe). Access Microbiology, 5 (9) 000605.v3, 1-16. doi: 10.1099/acmi.0.000605.v3 |
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2023 Journal Article Genetic mapping, candidate gene identification and marker validation for host plant resistance to the race 4 of Fusarium oxysporum f. sp. cubense using Musa acuminata ssp. malaccensisChen, Andrew, Sun, Jiaman, Viljoen, Altus, Mostert, Diane, Xie, Yucong, Mangila, Leroy, Bothma, Sheryl, Lyons, Rebecca, Hřibová, Eva, Christelová, Pavla, Uwimana, Brigitte, Amah, Delphine, Pearce, Stephen, Chen, Ning, Batley, Jacqueline, Edwards, David, Doležel, Jaroslav, Crisp, Peter, Brown, Allan F., Martin, Guillaume, Yahiaoui, Nabila, D’Hont, Angelique, Coin, Lachlan, Swennen, Rony and Aitken, Elizabeth A. B. (2023). Genetic mapping, candidate gene identification and marker validation for host plant resistance to the race 4 of Fusarium oxysporum f. sp. cubense using Musa acuminata ssp. malaccensis. Pathogens, 12 (6) 820, 820. doi: 10.3390/pathogens12060820 |
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2023 Journal Article Identification of a major QTL-controlling resistance to the Subtropical Race 4 of Fusarium oxysporum f. sp. cubense in Musa acuminata ssp. malaccensisChen, Andrew, Sun, Jiaman, Martin, Guillaume, Gray, Lesley-Ann, Hřibová, Eva, Christelová, Pavla, Yahiaoui, Nabila, Rounsley, Steve, Lyons, Rebecca, Batley, Jacqueline, Chen, Ning, Hamill, Sharon, Rai, Subash K., Coin, Lachlan, Uwimana, Brigitte, D’Hont, Angelique, Doležel, Jaroslav, Edwards, David, Swennen, Rony and Aitken, Elizabeth A. B. (2023). Identification of a major QTL-controlling resistance to the Subtropical Race 4 of Fusarium oxysporum f. sp. cubense in Musa acuminata ssp. malaccensis. Pathogens, 12 (2) 289, 1-13. doi: 10.3390/pathogens12020289 |
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2023 Journal Article Fusarium yellows of ginger (Zingiber officinale Roscoe) Caused by Fusarium oxysporum f. sp. zingiberi is associated with cultivar-specific expression of defense-responsive genesPrasath, Duraisamy, Matthews, Andrea, O’Neill, Wayne T., Aitken, Elizabeth A. B. and Chen, Andrew (2023). Fusarium yellows of ginger (Zingiber officinale Roscoe) Caused by Fusarium oxysporum f. sp. zingiberi is associated with cultivar-specific expression of defense-responsive genes. Pathogens, 12 (1) 141, 141. doi: 10.3390/pathogens12010141 |
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2020 Journal Article Epistatic interactions between PHOTOPERIOD1, CONSTANS1 and CONSTANS2 modulate the photoperiodic response in wheatShaw, Lindsay M., Li, Chengxia, Woods, Daniel P., Alvarez, Maria A., Lin, Huiqiong, Lau, Mei Y., Chen, Andrew and Dubcovsky, Jorge (2020). Epistatic interactions between PHOTOPERIOD1, CONSTANS1 and CONSTANS2 modulate the photoperiodic response in wheat. PLoS Genetics, 16 (7) e1008812, 1-28. doi: 10.1371/journal.pgen.1008812 |
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2019 Journal Article Wheat VRN1, FUL2 and FUL3 play critical and redundant roles in spikelet development and spike determinacyLi, Chengxia, Lin, Huiqiong, Chen, Andrew, Lau, Meiyee, Jernstedt, Judy and Dubcovsky, Jorge (2019). Wheat VRN1, FUL2 and FUL3 play critical and redundant roles in spikelet development and spike determinacy. Development, 146 (14) dev175398, dev175398. doi: 10.1242/dev.175398 |
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2019 Journal Article Assessing variations in host resistance to Fusarium oxysporum f sp. cubense race 4 in Musa species, with a focus on the subtropical race 4Chen, Andrew, Sun, Jiaman, Matthews, Andrea, Armas-Egas, Liz, Chen, Ning, Hamill, Sharon, Mintoff, Sharl, Tran-Nguyen, Lucy T. T., Batley, Jaqueline and Aitken, Elizabeth A. B. (2019). Assessing variations in host resistance to Fusarium oxysporum f sp. cubense race 4 in Musa species, with a focus on the subtropical race 4. Frontiers in Microbiology, 10 (MAY) 1062, 1062. doi: 10.3389/fmicb.2019.01062 |
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2018 Journal Article Correction to: Development and characterization of a spring hexaploid wheat line with no functional VRN2 genes (Theoretical and Applied Genetics, (2016), 129, 7, (1417-1428), 10.1007/s00122-016-2713-3)Kippes, Nestor, Chen, Andrew, Zhang, Xiaoqin, Lukaszewski, Adam J. and Dubcovsky, Jorge (2018). Correction to: Development and characterization of a spring hexaploid wheat line with no functional VRN2 genes (Theoretical and Applied Genetics, (2016), 129, 7, (1417-1428), 10.1007/s00122-016-2713-3). Theoretical and Applied Genetics, 131 (10). doi: 10.1007/s00122-018-3141-3 |
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2016 Journal Article RNA-seq studies using wheat PHYTOCHROME B and PHYTOCHROME C mutants reveal shared and specific functions in the regulation of flowering and shade-avoidance pathwaysPearce, Stephen, Kippes, Nestor, Chen, Andrew, Debernardi, Juan Manuel and Dubcovsky, Jorge (2016). RNA-seq studies using wheat PHYTOCHROME B and PHYTOCHROME C mutants reveal shared and specific functions in the regulation of flowering and shade-avoidance pathways. BMC Plant Biology, 16 (1) 141, 1-19. doi: 10.1186/s12870-016-0831-3 |
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2016 Journal Article Development and characterization of a spring hexaploid wheat line with no functional VRN2 genesKippes, Nestor, Chen, Andrew, Zhang, Xiaoqin, Lukaszewski, Adam J. and Dubcovsky, Jorge (2016). Development and characterization of a spring hexaploid wheat line with no functional VRN2 genes. Theoretical and Applied Genetics, 129 (7), 1417-1428. doi: 10.1007/s00122-016-2713-3 |
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2014 Journal Article PHYTOCHROME C plays a major role in the acceleration of wheat flowering under long-day photoperiodChen, Andrew, Li, Chengxia, Hu, Wei, Lau, Mei Yee, Lin, Huiqiong, Rockwell, Nathan C., Martin, Shelley S., Jernstedt, Judith A., Lagarias, J. Clark and Dubcovsky, Jorge (2014). PHYTOCHROME C plays a major role in the acceleration of wheat flowering under long-day photoperiod. Proceedings of the National Academy of Sciences of the United States of America, 111 (28), 10037-10044. doi: 10.1073/pnas.1409795111 |
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2014 Journal Article Fine mapping and epistatic interactions of the vernalization gene VRN-D4 in hexaploid wheatKippes, Nestor, Zhu, Jie, Chen, Andrew, Vanzetti, Leonardo, Lukaszewski, Adam, Nishida, Hidetaka, Kato, Kenji, Dvorak, Jan and Dubcovsky, Jorge (2014). Fine mapping and epistatic interactions of the vernalization gene VRN-D4 in hexaploid wheat. Molecular Genetics and Genomics, 289 (1), 47-62. doi: 10.1007/s00438-013-0788-y |
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2012 Journal Article Wheat TILLING Mutants Show That the Vernalization Gene VRN1 Down-Regulates the Flowering Repressor VRN2 in Leaves but Is Not Essential for FloweringChen, Andrew and Dubcovsky, Jorge (2012). Wheat TILLING Mutants Show That the Vernalization Gene VRN1 Down-Regulates the Flowering Repressor VRN2 in Leaves but Is Not Essential for Flowering. PLoS Genetics, 8 (12) e1003134. doi: 10.1371/journal.pgen.1003134 |
