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2016 Conference Publication An Australian prospective cohort of rheumatoid arthritis patients and their first-degree relatives characterising environmental, genetic, microbial and immune factorsBenham, Helen, Wood, John, Nagl, Lisa, Maradana, Muralidhara, Daly, Joshua, Lachner, Nancy, Hugenholtz, Philip and Thomas, Ranjeny (2016). An Australian prospective cohort of rheumatoid arthritis patients and their first-degree relatives characterising environmental, genetic, microbial and immune factors. Australian Rheumatology Association in conjunction with Rheumatology Health Professionals Association, 57th Annual Scientific Meeting, Darwin, NT, Australia, 30 April–4 May 2016. Richmond, VIC, Australia: Wiley-Blackwell Publishing Asia. doi: 10.1111/imj.13052 |
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2016 Conference Publication Distinct Oral and Fecal Community Profiles Enriched in Opportunistic Pathogens in RA Patients and First Degree Relatives Are Influenced By Environmental Risk Factors, Including Smoking, Dental History and Lung InfectionBenham, Helen, Maradana, Muralidhara, Lakis, Vanessa Anne, Cuiv, Paraic O., Wood, John, Nagl, Lisa, Rammouth, Nishta, Owens, Clare, Daly, Joshua., Lachner, Nancy, Morrison, Mark, Hugenholtz, Philip, Le Cao, Kim-Anh and Thomas, Rarljeny (2016). Distinct Oral and Fecal Community Profiles Enriched in Opportunistic Pathogens in RA Patients and First Degree Relatives Are Influenced By Environmental Risk Factors, Including Smoking, Dental History and Lung Infection. 2016 ACR/ARHP Annual Meeting, Washington, DC, 11-16 November 2016. Hoboken, NJ, United States: John Wiley & Sons. |
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2015 Conference Publication The placental microbiome; microbial presence in nature’s transplantPelzer, Elise, Hugens, Flavia, Hugenholtz, Philip, Lourie, Rohan, Beagley, Kenneth and Turner, Ross (2015). The placental microbiome; microbial presence in nature’s transplant. International Federation of Placenta Associations Meeting, Brisbane, QLD Australia, 2015. London, United Kingdom: Elsevier. doi: 10.1016/j.placenta.2015.07.252 |
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2015 Conference Publication The microbial community of eutherian origin: Effects of maternal microbiota on the placental microbiomeRagonesi, Leanne, Huygens, Flavia, Turner, Ross, Hugenholtz, Philip, Lourie, Rohan, Beagley, Ken and Pelzer, Elise (2015). The microbial community of eutherian origin: Effects of maternal microbiota on the placental microbiome. unknown, unknown, unknown. London, United Kingdom: Elsevier. doi: 10.1016/j.placenta.2015.07.308 |
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2015 Conference Publication Profiling Immunogenic Bacteria within the Microbiota of ZAP-70 Mutant SKG Mice Associated with Spondyloarthritis and Ileitis Using IgA-SEQRehaume, Linda, Kang, Alicia, Zbarskaya, Olga, Mullaney, Jane, Kim, Matthew, Cuiv, Paraic O., Angel, Nicola, Hugenholtz, Philip, Morrison, Mark and Thomas, Ranjeny (2015). Profiling Immunogenic Bacteria within the Microbiota of ZAP-70 Mutant SKG Mice Associated with Spondyloarthritis and Ileitis Using IgA-SEQ. 2015 ACR/ARHP Annual Meeting, San Francisco, CA, United States, 6-11 November 2015. Hoboken, NJ, United States: John Wiley & Sons. |
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2014 Conference Publication Embedding Undergraduate Research throughout Microbiology MajorsWang, Jack T.H., Daly, Joshua N., Willner, Dana L., Patil, Jayee, Hall, Roy, Tyson, Gene W., Hugenholtz, Philip and Schembri, Mark A. (2014). Embedding Undergraduate Research throughout Microbiology Majors. ASM Conference for Undergraduate Educators, Danvers, MA United States, 15-18 May 2014. |
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2014 Conference Publication Plant growth promoting rhizobacteria (PGPR) for use in horticulture.Fangrath, S, Mudge, S., Deng, Y, Robinson, N, Schmidt, S, Hugenholtz, P, Ragan, M and Paungfoo-Lonhienne, C (2014). Plant growth promoting rhizobacteria (PGPR) for use in horticulture.. The 29th International Horticultural Congress, Brisbane Convention Centre, Brisbane Qld, Australia, 17 - 22 August 2014. |
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2013 Conference Publication Granule shearing enables the high resolution microbial identityLu, Y., Slater, F., Bello Mendoza, R., Jensen, P., Hugenholtz, P. and Batstone, D. J. (2013). Granule shearing enables the high resolution microbial identity. 13th World Congress on Anaerobic Digestion (AD 13), Santiago de Compostela, Spain, 25-28 June, 2013. London, United Kingdom: International Water Association (IWA). |
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2013 Conference Publication Longitudinal holistic profiling of the lung transplant microbiomeWillner, D., Ab-Ghani, N. A., Yerkovich, S., Tan, M. E., Hopkins, P. M., Chambers, D. C. and Hugenholtz, P. (2013). Longitudinal holistic profiling of the lung transplant microbiome. 33rd Annual Meeting and Scientific Sessions of the International Society for Heart and Lung Transplantation, Montreal, Canada, 24-27 April 2013. Philadelphia, PA, United States: Elsevier. doi: 10.1016/j.healun.2013.01.004 |
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2012 Conference Publication Distinct microbial signatures of healthy and failing lung allograftsWillner, D., Hugenholtz, P., Tan, M.E., Yerkovich, S.T., Hopkins, P.M. and Chambers, D.C. (2012). Distinct microbial signatures of healthy and failing lung allografts. 32nd Annual Meeting and Scientific Sessions of the International Society for Heart and Lung Transplantation/Meeting of the ISHLT Academy Core Competencies in Mechanical Circulatory Support, Prague, Czech Republic, 17-21 April 2012. Philadelphia, PA, United States: Elsevier. doi: 10.1016/j.healun.2012.01.072 |
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2010 Conference Publication Is the future of metagenomics, genomics?Hugenholtz, Philip (2010). Is the future of metagenomics, genomics?. Experimental Biology 2010, Anaheim, CA, United States, 24-28 April 2010. Hoboken, NJ, United States: John Wiley & Sons. |
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2010 Conference Publication ShotgunFunctionalizeR - an R-package for functional comparison of metagenomesKristiansson, E., Hugenholtz, P. and Dalevi, D. (2010). ShotgunFunctionalizeR - an R-package for functional comparison of metagenomes. 35th Congress of the Federation-of-European-Biochemical-Societies, Gothenburg Sweden, Jun 26-Jul 01, 2010. MALDEN: WILEY-BLACKWELL PUBLISHING, INC. |
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2010 Conference Publication Correlative TEM/FISH imaging of microbial communitiesKnierim, Bernhard, Wilmes, Paul, Webb, Rick I., McDonald, Kent, Comolli, Luis, Luef, Birgit, Downing, Kenneth H., Banfield, Jill, Hugenholtz, Phil, Liphardt, Jan and Auer, Manfred (2010). Correlative TEM/FISH imaging of microbial communities. Biophysical Society 54th Annual Meeting, San Francisco, CA United States, 20-24 February 2010. St. Louis, MO United States: Cell Press. doi: 10.1016/j.bpj.2009.12.3157 |
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2009 Conference Publication Diversity of fiber-adherent bacteria on three potential bioenergy feedstocks during digestion in the cow rumenYannarell, A. C., Hess, M., Hugenholtz, P. and Mackie, R. I. (2009). Diversity of fiber-adherent bacteria on three potential bioenergy feedstocks during digestion in the cow rumen. Conference on Gastrointestinal Function, Chicago, USA, 20–22 April 2009. New York, NY United States: Springer. doi: 10.1007/s00248-009-9496-x |
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2009 Conference Publication Characterization and development of a systems-level understanding of microbial metabolism in the foregut microbiome of the Tammar wallaby (Macropus eugenii).Pope, P., Denman, S., Tringe, S., Hinds, L., Hugenholtz, P., McSweeney, C. and Morrison, M. (2009). Characterization and development of a systems-level understanding of microbial metabolism in the foregut microbiome of the Tammar wallaby (Macropus eugenii).. 2009 Conference on Gastrointestinal Function, Chicago, USA, 20-22 April, 2009. New York, NY, United States: Springer. doi: 10.1007/s00248-009-9496-x |
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2008 Conference Publication Annotation of metagenome short reads using proxygenesDalevi, Daneil, Ivanova, Natalia N., Mavromatis, Konstantinos, Hooper, Sean D., Szeto, Ernest, Hugenholtz, Philip, Kyrpides, Nikos C. and Markowitz, Victor M. (2008). Annotation of metagenome short reads using proxygenes. Joint Meeting of the 7th European Conference on Computational Biology and the 5th Meeting of the Bioinformatics Italian Society (ECCB 2008), Cagliari, Italy, 22-26 September 2008. Oxford, U.K.: Oxford University Press. doi: 10.1093/bioinformatics/btn276 |
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2006 Conference Publication Metagenomic analysis of phosphorus removing sludge communitiesMartín, Héctor García, Kunin, Victor, Ivanova, Natalia, Warnecke, Falk, Peterson, S. B., Barry, Kerrie, McHardy, Alice C., Yeates, Christine, He, Shaomei, Salamov, Asaf, Szeto, Ernest, Dalin, Eileen, Putnam, Nik, Rigoutsos, Isidore, Kyrpides, Nikos C., Blackall, Linda Louise, McMahon, Katherine D. and Hugenholtz, Philip (2006). Metagenomic analysis of phosphorus removing sludge communities. ISME Vienna 2006: 11th International Symposium on Microbial Ecology. The hidden powers: Microbial communities in action, Vienna, Austria, 20-25 August 2006. Kenes International. |
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2006 Conference Publication An experimental metagenome data management and analysis systemMarkowitz, Victor M., Ivanova, Natalia, Palaniappan, Krishna, Szeto, Ernest, Korzeniewski, Frank, Lykidis, Athanasios, Anderson, Iain, Mavrommatis, Konstantinos, Kunin, Victor, Martin, Hector Garcia, Dubchak, Inna, Hugenholtz, Phil and Kyrpides, Nikos C. (2006). An experimental metagenome data management and analysis system. 14th Conference on Intelligent Systems for Molecular Biology (ISMB 2006), Fortaleza, Brazil, 6-10 August 2006. Oxford, U.K.: Oxford University Press. doi: 10.1093/bioinformatics/btl217 |
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2004 Conference Publication Magnetocardiography predicts coronary artery disease in patients presenting with acute chest painPark, JW, Hill, P, Hugenholtz, P, Chung, N and Jung, F (2004). Magnetocardiography predicts coronary artery disease in patients presenting with acute chest pain. In: ESC Congress 2004, Munich Germany, (303-304). Aug 28-Sep 01, 2004. |
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2004 Conference Publication The tree of life - An overviewBaldauf, SL, Bhattacharya, D, Cockrill, J, Hugenholtz, P, Pawlowski, J and Simpson, AGB (2004). The tree of life - An overview. Conference on Assembling the Tree of Life, New York Ny, May 30-Jun 01, 2002. NEW YORK: OXFORD UNIV PRESS. |
