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2023 Journal Article Retrospective study in US commercial sorghum breeding: I. Genetic gain in relation to relative maturityMayor, L., Demarco, P., Lira, S., Fang, Y., Abadie, T., Gambin, B., Hammer, G., Ciampitti, I., Cooper, M. and Messina, C. (2023). Retrospective study in US commercial sorghum breeding: I. Genetic gain in relation to relative maturity. Crop Science, 63 (2), 501-510. doi: 10.1002/csc2.20897 |
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2023 Book Chapter Predicting Genotype × Environment × Management (G × E × M) interactions for the design of crop improvement strategies: Integrating breeder, agronomist, and farmer perspectivesCooper, Mark, Messina, Carlos D., Tang, Tom, Gho, Carla, Powell, Owen M., Podlich, Dean W., Technow, Frank and Hammer, Graeme L. (2023). Predicting Genotype × Environment × Management (G × E × M) interactions for the design of crop improvement strategies: Integrating breeder, agronomist, and farmer perspectives. Plant breeding reviews. (pp. 467-585) edited by Irwin Goldman. Hoboken, NJ, United States: Wiley Blackwell. doi: 10.1002/9781119874157.ch8 |
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2023 Journal Article Breeding crops for drought-affected environments and improved climate resilienceCooper, Mark and Messina, Carlos D. (2023). Breeding crops for drought-affected environments and improved climate resilience. The Plant Cell, 35 (1), 162-186. doi: 10.1093/plcell/koac321 |
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2022 Other Outputs Extending the breeder’s equation to take aim at the Target Population of EnvironmentsCooper, Mark, Owen Powell, Gho, Carla, Tang, Tom and Messina, Carlos (2022). Extending the breeder’s equation to take aim at the Target Population of Environments. |
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2022 Conference Publication Integrating Hierarchical G2P Maps with Genomic PredictionPowell, Owen, McLean, Greg, Brider, Jason, Technow, Frank, Tang, Tom, Messina, Carlos D., Hammer, Graeme and Cooper, Mark (2022). Integrating Hierarchical G2P Maps with Genomic Prediction. Interdrought VII - The 7th Congress on plant production in water-limited environments, Dakar, Senegal, 1 December 2022. |
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2022 Conference Publication Utilising prior knowledge to improve breedingPowell, Owen, Barbier, Francois, Voss-Fels, Kai, Beveridge, Christine and Cooper, Mark (2022). Utilising prior knowledge to improve breeding. GxExM Symposium, Brisbane, QLD Australia, 3-4 November 2022. |
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2022 Conference Publication Transferring prediction models: from model organisms to cropsPowell, Owen, Barbier, Francois, Fichtner, Franziska, Sukumaran, Sivakumar, McLean, Greg, Brider, Jason, Technow, Frank, Tang, Tom, Messina, Carlos D., Jordan, David, Hammer, Graeme, Beveridge, Christine and Cooper, Mark (2022). Transferring prediction models: from model organisms to crops. TropAg International Agriculture Conference, Brisbane, QLD, Australia, 31 October - 2 November 2022. |
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2022 Other Outputs Transgene by Germplasm Interactions Can Impact Transgene EvaluationLinares, Julien F., Coles, Nathan D., Mo, Hua, Habben, Jeff E., Humbert, Sabrina, Messina, Carlos, Tang, Tom, Cooper, Mark, Gho, Carla, Carrasco, Ricardo, Carter, Javier, Wicher Flounders, Jillian and Brummer, E. Charles (2022). Transgene by Germplasm Interactions Can Impact Transgene Evaluation. |
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2022 Other Outputs Methods for evaluating effects of transgenes for quantitative traitsLinares, Julien F., Coles, Nathan D., Mo, Hua, Habben, Jeffrey E., Humbert, Sabrina, Messina, Carlos, Tang, Tom, Cooper, Mark, Gho, Carla, Carrasco, Ricardo, Carter, Javier, Wicher Flounders, Jillian and Brummer, E. Charles (2022). Methods for evaluating effects of transgenes for quantitative traits. |
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2022 Other Outputs Plant Breeding in the face of climate changeMessina, Carlos D. and Cooper, Mark (2022). Plant Breeding in the face of climate change. |
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2022 Conference Publication Prior knowledge-driven branching phenotype prediction for shoot architecture improvementWijerathna-Yapa, A., Fortuna, N., Cooper, M. and Beveridge, C. A. (2022). Prior knowledge-driven branching phenotype prediction for shoot architecture improvement. ComBio 2022, Melbourne Convention and Exhibition Centre (MCE), 27-30 September 2022. |
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2022 Conference Publication Increasing Predictive Ability for Crop Improvement: Linking Crop Growth Models with Whole Genome PredictionPowell, Owen, McLean, Greg, Brider, Jason, Technow, Frank, Sukumaran, Sivakumar, Jordan, David, Hammer, Graeme and Cooper, Mark (2022). Increasing Predictive Ability for Crop Improvement: Linking Crop Growth Models with Whole Genome Prediction. AuSoRGM, Toowoomba, QLD Australia, 18-19 August 2022. |
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2022 Journal Article Global wheat production could benefit from closing the genetic yield gapSenapati, Nimai, Semenov, Mikhail A., Halford, Nigel G., Hawkesford, Malcolm J., Asseng, Senthold, Cooper, Mark, Ewert, Frank, van Ittersum, Martin K., Martre, Pierre, Olesen, Jørgen E., Reynolds, Matthew, Rötter, Reimund P. and Webber, Heidi (2022). Global wheat production could benefit from closing the genetic yield gap. Nature Food, 3 (7), 532-541. doi: 10.1038/s43016-022-00540-9 |
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2022 Journal Article Radiation use efficiency increased over a century of maize (Zea mays L.) breeding in the US corn beltMessina, Carlos D., Rotundo, Jose, Hammer, Graeme L., Gho, Carla, Reyes, Andres, Fang, Yinan, van Oosterom, Erik, Borras, Lucas and Cooper, Mark (2022). Radiation use efficiency increased over a century of maize (Zea mays L.) breeding in the US corn belt. Journal of Experimental Botany, 73 (16), 5503-5513. doi: 10.1093/jxb/erac212 |
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2022 Conference Publication Prior Knowledge-driven Branching Phenotype Prediction for Shoot Architecture ImprovementWijerathna-Yapa, Akila, Fortuna, Nicole, Dun, Elizabeth, Lawson, Brodie, Cooper, Mark and Beveridge, Christine A. (2022). Prior Knowledge-driven Branching Phenotype Prediction for Shoot Architecture Improvement. ARC Centre of Excellence for Plant Success in Nature and Agriculture Research Retreat, Hobart, TAS Australia, 30 May - 1 June 2022. |
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2022 Journal Article Sustained improvement in tolerance to water deficit accompanies maize yield increase in temperate environmentsMessina, Carlos, Ciampitti, Ignacio Antonio, Berning, Dan, Bubeck, Dave, Hammer, Graeme and Cooper, Mark (2022). Sustained improvement in tolerance to water deficit accompanies maize yield increase in temperate environments. Crop Science, 62 (6), 1-13. doi: 10.1002/csc2.20781 |
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2022 Conference Publication An Ecophysiology-Inspired Gene-Phenotype Map for BreedingPowell, Owen, Technow, Frank, Messina, Carlos D., McLean, Greg, Brider, Jason, Van Oosterom, Erik, Wu, Alex, Jordan, David, Hammer, Graeme and Cooper, Mark (2022). An Ecophysiology-Inspired Gene-Phenotype Map for Breeding. Australasian Plant Breeding Conference, Gold Coast, QLD, Australia, 9-11 May 2022. |
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2022 Journal Article Investigations into the emergent properties of gene-to-phenotype networks across cycles of selection: a case study of shoot branching in plantsPowell, Owen M., Barbier, Francois, Voss-Fels, Kai P., Beveridge, Christine and Cooper, Mark (2022). Investigations into the emergent properties of gene-to-phenotype networks across cycles of selection: a case study of shoot branching in plants. in silico Plants, 4 (1) diac006, 1-9. doi: 10.1093/insilicoplants/diac006 |
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2022 Journal Article Physiological trait networks enhance understanding of crop growth and water use in contrasting environmentsGleason, Sean M., Barnard, Dave M., Green, Timothy R., Mackay, D. Scott, Wang, Diane R., Ainsworth, Elizabeth A., Altenhofen, Jon, Brodribb, Timothy J., Cochard, Hervé, Comas, Louise H., Cooper, Mark, Creek, Danielle, DeJonge, Kendall C., Delzon, Sylvain, Fritschi, Felix B., Hammer, Graeme, Hunter, Cameron, Lombardozzi, Danica, Messina, Carlos D., Ocheltree, Troy, Maxwell Stevens, Bo, Stewart, Jared J., Vadez, Vincent, Wenz, Joshua, Wright, Ian J., Yemoto, Kevin and Zhang, Huihui (2022). Physiological trait networks enhance understanding of crop growth and water use in contrasting environments. Plant, Cell & Environment, 45 (9), 2554-2572. doi: 10.1111/pce.14382 |
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2022 Other Outputs Investigations into the emergent properties of gene-to-phenotype networks across cycles of selection: a case study of shoot branching in plantsPowell, Owen M., Barbier, Francois, Voss-Fels, Kai P., Beveridge, Christine A. and Cooper, Mark (2022). Investigations into the emergent properties of gene-to-phenotype networks across cycles of selection: a case study of shoot branching in plants. |
