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2022 Conference Publication Transferring prediction models: from model organisms to cropsPowell, Owen, Barbier, Francois, Fichtner, Franziska, Sukumaran, Sivakumar, McLean, Greg, Brider, Jason, Technow, Frank, Tang, Tom, Messina, Carlos D., Jordan, David, Hammer, Graeme, Beveridge, Christine and Cooper, Mark (2022). Transferring prediction models: from model organisms to crops. TropAg International Agriculture Conference, Brisbane, QLD, Australia, 31 October - 2 November 2022. |
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2022 Other Outputs Transgene by Germplasm Interactions Can Impact Transgene EvaluationLinares, Julien F., Coles, Nathan D., Mo, Hua, Habben, Jeff E., Humbert, Sabrina, Messina, Carlos, Tang, Tom, Cooper, Mark, Gho, Carla, Carrasco, Ricardo, Carter, Javier, Wicher Flounders, Jillian and Brummer, E. Charles (2022). Transgene by Germplasm Interactions Can Impact Transgene Evaluation. doi: 10.1101/2022.10.22.513364 |
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2022 Other Outputs Methods for evaluating effects of transgenes for quantitative traitsLinares, Julien F., Coles, Nathan D., Mo, Hua, Habben, Jeffrey E., Humbert, Sabrina, Messina, Carlos, Tang, Tom, Cooper, Mark, Gho, Carla, Carrasco, Ricardo, Carter, Javier, Wicher Flounders, Jillian and Brummer, E. Charles (2022). Methods for evaluating effects of transgenes for quantitative traits. doi: 10.1101/2022.10.22.513367 |
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2022 Other Outputs Plant Breeding in the face of climate changeMessina, Carlos D. and Cooper, Mark (2022). Plant Breeding in the face of climate change. doi: 10.1101/2022.10.07.511293 |
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2022 Conference Publication Prior knowledge-driven branching phenotype prediction for shoot architecture improvementWijerathna-Yapa, A., Fortuna, N., Cooper, M. and Beveridge, C. A. (2022). Prior knowledge-driven branching phenotype prediction for shoot architecture improvement. ComBio 2022, Melbourne Convention and Exhibition Centre (MCE), 27-30 September 2022. |
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2022 Conference Publication Increasing Predictive Ability for Crop Improvement: Linking Crop Growth Models with Whole Genome PredictionPowell, Owen, McLean, Greg, Brider, Jason, Technow, Frank, Sukumaran, Sivakumar, Jordan, David, Hammer, Graeme and Cooper, Mark (2022). Increasing Predictive Ability for Crop Improvement: Linking Crop Growth Models with Whole Genome Prediction. AuSoRGM, Toowoomba, QLD Australia, 18-19 August 2022. |
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2022 Journal Article Global wheat production could benefit from closing the genetic yield gapSenapati, Nimai, Semenov, Mikhail A., Halford, Nigel G., Hawkesford, Malcolm J., Asseng, Senthold, Cooper, Mark, Ewert, Frank, van Ittersum, Martin K., Martre, Pierre, Olesen, Jørgen E., Reynolds, Matthew, Rötter, Reimund P. and Webber, Heidi (2022). Global wheat production could benefit from closing the genetic yield gap. Nature Food, 3 (7), 532-541. doi: 10.1038/s43016-022-00540-9 |
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2022 Journal Article Radiation use efficiency increased over a century of maize (Zea mays L.) breeding in the US corn beltMessina, Carlos D., Rotundo, Jose, Hammer, Graeme L., Gho, Carla, Reyes, Andres, Fang, Yinan, van Oosterom, Erik, Borras, Lucas and Cooper, Mark (2022). Radiation use efficiency increased over a century of maize (Zea mays L.) breeding in the US corn belt. Journal of Experimental Botany, 73 (16), 5503-5513. doi: 10.1093/jxb/erac212 |
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2022 Conference Publication Prior Knowledge-driven Branching Phenotype Prediction for Shoot Architecture ImprovementWijerathna-Yapa, Akila, Fortuna, Nicole, Dun, Elizabeth, Lawson, Brodie, Cooper, Mark and Beveridge, Christine A. (2022). Prior Knowledge-driven Branching Phenotype Prediction for Shoot Architecture Improvement. ARC Centre of Excellence for Plant Success in Nature and Agriculture Research Retreat, Hobart, TAS Australia, 30 May - 1 June 2022. |
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2022 Journal Article Sustained improvement in tolerance to water deficit accompanies maize yield increase in temperate environmentsMessina, Carlos, Ciampitti, Ignacio Antonio, Berning, Dan, Bubeck, Dave, Hammer, Graeme and Cooper, Mark (2022). Sustained improvement in tolerance to water deficit accompanies maize yield increase in temperate environments. Crop Science, 62 (6), 1-13. doi: 10.1002/csc2.20781 |
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2022 Conference Publication An Ecophysiology-Inspired Gene-Phenotype Map for BreedingPowell, Owen, Technow, Frank, Messina, Carlos D., McLean, Greg, Brider, Jason, Van Oosterom, Erik, Wu, Alex, Jordan, David, Hammer, Graeme and Cooper, Mark (2022). An Ecophysiology-Inspired Gene-Phenotype Map for Breeding. Australasian Plant Breeding Conference, Gold Coast, QLD, Australia, 9-11 May 2022. |
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2022 Journal Article Investigations into the emergent properties of gene-to-phenotype networks across cycles of selection: a case study of shoot branching in plantsPowell, Owen M., Barbier, Francois, Voss-Fels, Kai P., Beveridge, Christine and Cooper, Mark (2022). Investigations into the emergent properties of gene-to-phenotype networks across cycles of selection: a case study of shoot branching in plants. in silico Plants, 4 (1) diac006, 1-9. doi: 10.1093/insilicoplants/diac006 |
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2022 Journal Article Physiological trait networks enhance understanding of crop growth and water use in contrasting environmentsGleason, Sean M., Barnard, Dave M., Green, Timothy R., Mackay, D. Scott, Wang, Diane R., Ainsworth, Elizabeth A., Altenhofen, Jon, Brodribb, Timothy J., Cochard, Hervé, Comas, Louise H., Cooper, Mark, Creek, Danielle, DeJonge, Kendall C., Delzon, Sylvain, Fritschi, Felix B., Hammer, Graeme, Hunter, Cameron, Lombardozzi, Danica, Messina, Carlos D., Ocheltree, Troy, Maxwell Stevens, Bo, Stewart, Jared J., Vadez, Vincent, Wenz, Joshua, Wright, Ian J., Yemoto, Kevin and Zhang, Huihui (2022). Physiological trait networks enhance understanding of crop growth and water use in contrasting environments. Plant, Cell & Environment, 45 (9), 2554-2572. doi: 10.1111/pce.14382 |
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2022 Other Outputs Investigations into the emergent properties of gene-to-phenotype networks across cycles of selection: a case study of shoot branching in plantsPowell, Owen M., Barbier, Francois, Voss-Fels, Kai P., Beveridge, Christine A. and Cooper, Mark (2022). Investigations into the emergent properties of gene-to-phenotype networks across cycles of selection: a case study of shoot branching in plants. doi: 10.1101/2022.02.03.479064 |
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2022 Journal Article Can we harness digital technologies and physiology to hasten genetic gain in United States maize breeding?Diepenbrock, Christine, Tang, Tom, Jines, Michael, Technow, Frank, Lira, Sara, Podlich, Dean, Cooper, Mark and Messina, Carlos (2022). Can we harness digital technologies and physiology to hasten genetic gain in United States maize breeding?. Plant Physiology, 188 (2), 1141-1157. doi: 10.1093/plphys/kiab527 |
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2022 Journal Article Crop improvement for circular bioeconomy systemsMessina, Carlos D., van Eeuwijk, Fred, Tang, Tom, Truong, Sandra K., McCormick, Ryan F., Technow, Frank, Powell, Owen, Mayor, Laura, Gutterson, Neal, Jones, James W., Hammer, Graeme and Cooper, Mark (2022). Crop improvement for circular bioeconomy systems. Journal of the ASABE, 65 (3), 491-504. doi: 10.13031/ja.14912 |
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2022 Conference Publication The pursuit of excellence; some reflections after 50+ years of plant breeding at The University of Queensland (9771)Lambrides, Christopher , Basford, Kaye , DeLacy, Ian , Cooper, Mark , Hardner, Craig , Godwin, Ian , Dieters, Mark and Arief, Vivi (2022). The pursuit of excellence; some reflections after 50+ years of plant breeding at The University of Queensland (9771). Australasian Plant Breeding Conference, Gold Coast, QLD, Australia, 9-11 May 2022. |
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2021 Journal Article Can we harness “enviromics” to accelerate crop improvement by integrating breeding and agronomy?Cooper, Mark and Messina, Carlos D. (2021). Can we harness “enviromics” to accelerate crop improvement by integrating breeding and agronomy?. Frontiers in Plant Science, 12 735143, 735143. doi: 10.3389/fpls.2021.735143 |
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2021 Journal Article Predicting phenotypes from genetic, environment, management, and historical data using CNNsWashburn, Jacob D., Cimen, Emre, Ramstein, Guillaume, Reeves, Timothy, O'Briant, Patrick, McLean, Greg, Cooper, Mark, Hammer, Graeme and Buckler, Edward S. (2021). Predicting phenotypes from genetic, environment, management, and historical data using CNNs. Theoretical and Applied Genetics, 134 (12), 3997-4011. doi: 10.1007/s00122-021-03943-7 |
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2021 Journal Article Plant production in water-limited environmentsHammer, Graeme L., Cooper, Mark and Reynolds, Matthew P. (2021). Plant production in water-limited environments. Journal of Experimental Botany, 72 (14), 5097-5101. doi: 10.1093/jxb/erab273 |
