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2020 Journal Article MEMOTE for standardized genome-scale metabolic model testingLieven, Christian, Beber, Moritz E., Olivier, Brett G., Bergmann, Frank T., Ataman, Meric, Babaei, Parizad, Bartell, Jennifer A., Blank, Lars M., Chauhan, Siddharth, Correia, Kevin, Diener, Christian, Dräger, Andreas, Ebert, Birgitta E., Edirisinghe, Janaka N., Faria, José P., Feist, Adam M., Fengos, Georgios, Fleming, Ronan M. T., García-Jiménez, Beatriz, Hatzimanikatis, Vassily, van Helvoirt, Wout, Henry, Christopher S., Hermjakob, Henning, Herrgård, Markus J., Kaafarani, Ali, Kim, Hyun Uk, King, Zachary, Klamt, Steffen, Klipp, Edda ... Zhang, Cheng (2020). MEMOTE for standardized genome-scale metabolic model testing. Nature Biotechnology, 38 (3), 272-276. doi: 10.1038/s41587-020-0446-y |
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2020 Journal Article Pseudomonas mRNA 2.0: Boosting gene expression through enhanced mRNA stability and translational efficiencyNeves, Dário, Vos, Stefan, Blank, Lars M. and Ebert, Birgitta E. (2020). Pseudomonas mRNA 2.0: Boosting gene expression through enhanced mRNA stability and translational efficiency. Frontiers in Bioengineering and Biotechnology, 7 458, 458. doi: 10.3389/fbioe.2019.00458 |
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2019 Journal Article Microfluidic irreversible electroporation — a versatile tool to extract intracellular contents of bacteria and yeastRockenbach, Alexander, Sudarsan, Suresh, Berens, Judith, Kosubek, Michael, Lazar, Jaroslav, Demling, Philipp, Hanke, René, Mennicken, Philip, Ebert, Birgitta E., Blank, Lars M. and Schnakenberg, Uwe (2019). Microfluidic irreversible electroporation — a versatile tool to extract intracellular contents of bacteria and yeast. Metabolites, 9 (10) 211, 211. doi: 10.3390/metabo9100211 |
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2019 Journal Article Multi-omics analysis of fatty alcohol production in engineered yeasts Saccharomyces cerevisiae and Yarrowia lipolyticaDahlin, Jonathan, Holkenbrink, Carina, Morella, Eko Roy, Wang, Guokun, Liebal, Ulf, Lieven, Christian, Weber, Dieter, McCloskey, Douglas, Ebert, Birgitta E., Herrgard, Markus J., Blank, Lars Mathias and Borodina, Irina (2019). Multi-omics analysis of fatty alcohol production in engineered yeasts Saccharomyces cerevisiae and Yarrowia lipolytica. Frontiers in Genetics, 10 (JUL) 747. doi: 10.3389/fgene.2019.00747 |
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2019 Journal Article Evaluation of pyruvate decarboxylase‐negative Saccharomyces cerevisiae strains for the production of succinic acidZahoor, Ahmed, Küttner, Felix T. F., Blank, Lars M. and Ebert, Birgitta E. (2019). Evaluation of pyruvate decarboxylase‐negative Saccharomyces cerevisiae strains for the production of succinic acid. Engineering in Life Sciences, 19 (10) elsc.201900080, 711-720. doi: 10.1002/elsc.201900080 |
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2019 Journal Article Determination of growth-coupling strategies and their underlying principlesAlter, Tobias B. and Ebert, Birgitta E. (2019). Determination of growth-coupling strategies and their underlying principles. BMC Bioinformatics, 20 (1) 447, 447. doi: 10.1186/s12859-019-2946-7 |
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2019 Journal Article Elevated temperatures do not trigger a conserved metabolic network response among thermotolerant yeastsLehnen, Mathias, Ebert, Birgitta E. and Blank, Lars M. (2019). Elevated temperatures do not trigger a conserved metabolic network response among thermotolerant yeasts. BMC Microbiology, 19 (1) 100, 100. doi: 10.1186/s12866-019-1453-3 |
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2019 Journal Article The transcriptome and flux profiling of Crabtree‐negative hydroxy acid producing strains of Saccharomyces cerevisiae reveals changes in the central carbon metabolismJessop‐Fabre, Mathew M, Dahlin, Jonathan, Biron, Mathias B, Stovicek, Vratislav, Ebert, Birgitta E, Blank, Lars M, Budin, Itay, Keasling, Jay D and Borodina, Irina (2019). The transcriptome and flux profiling of Crabtree‐negative hydroxy acid producing strains of Saccharomyces cerevisiae reveals changes in the central carbon metabolism. Biotechnology Journal, 14 (9) 1900013, 1900013. doi: 10.1002/biot.201900013 |
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2019 Journal Article Aromatisation of bio-derivable isobutyraldehyde over HZSM-5 zeolite catalystsDeischter, Jeff, Schute, Kai, Neves, Dario S., Ebert, Brigitta E., Blank, Lars M. and Palkovits, Regina (2019). Aromatisation of bio-derivable isobutyraldehyde over HZSM-5 zeolite catalysts. Green Chemistry, 21 (7), 1710-1717. doi: 10.1039/c9gc00483a |
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2018 Journal Article CO2 to succinic acid – Estimating the potential of biocatalytic routesLiebal, Ulf W., Blank, Lars M. and Ebert, Birgitta E. (2018). CO2 to succinic acid – Estimating the potential of biocatalytic routes. Metabolic Engineering Communications, 7 e00075, e00075. doi: 10.1016/j.mec.2018.e00075 |
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2018 Journal Article Discovery and Evaluation of Biosynthetic Pathways for the Production of Five Methyl Ethyl Ketone PrecursorsTokic, Milenko, Hadadi, Noushin, Ataman, Meric, Neves, Dário, Ebert, Birgitta E., Blank, Lars M., Miskovic, Ljubisa and Hatzimanikatis, Vassily (2018). Discovery and Evaluation of Biosynthetic Pathways for the Production of Five Methyl Ethyl Ketone Precursors. ACS Synthetic Biology, 7 (8), 1858-1873. doi: 10.1021/acssynbio.8b00049 |
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2018 Journal Article A breath of information: the volatilomeMansurova, M., Ebert, Birgitta E., Blank, Lars M. and Ibáñez, Alfredo J. (2018). A breath of information: the volatilome. Current Genetics, 64 (4), 959-964. doi: 10.1007/s00294-017-0800-x |
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2018 Journal Article Physiologic and metabolic characterization of Saccharomyces cerevisiae reveals limitations in the synthesis of the triterpene squaleneEbert, Birgitta E, Czarnotta, Eik and Blank, Lars M (2018). Physiologic and metabolic characterization of Saccharomyces cerevisiae reveals limitations in the synthesis of the triterpene squalene. FEMS Yeast Research, 18 (8) foy077. doi: 10.1093/femsyr/foy077 |
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2018 Journal Article Genetic Optimization Algorithm for Metabolic Engineering RevisitedAlter, Tobias, Blank, Lars and Ebert, Birgitta (2018). Genetic Optimization Algorithm for Metabolic Engineering Revisited. Metabolites, 8 (2) 33, 33. doi: 10.3390/metabo8020033 |
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2018 Book Chapter Multi-capillary column ion mobility spectrometry of volatile metabolites for phenotyping of microorganismsHalbfeld, Christoph, Baumbach, Jörg Ingo, Blank, Lars M. and Ebert, Birgitta E. (2018). Multi-capillary column ion mobility spectrometry of volatile metabolites for phenotyping of microorganisms. Synthetic metabolic pathways: methods and protocols. (pp. 229-258) New York, NY, United States: Humana Press. doi: 10.1007/978-1-4939-7295-1_15 |
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2017 Journal Article A comprehensive evaluation of constraining amino acid biosynthesis in compartmented models for metabolic flux analysisLehnen, Mathias, Ebert, Birgitta E. and Blank, Lars M. (2017). A comprehensive evaluation of constraining amino acid biosynthesis in compartmented models for metabolic flux analysis. Metabolic Engineering Communications, 5, 34-44. doi: 10.1016/j.meteno.2017.07.001 |
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2017 Journal Article Comprehensive real-time analysis of the yeast volatilomeTejero Rioseras, Alberto, Garcia Gomez, Diego, Ebert, Birgitta E., Blank, Lars M., Ibáñez, Alfredo J. and Sinues, Pablo M.-L. (2017). Comprehensive real-time analysis of the yeast volatilome. Scientific Reports, 7 (1) 14236, 14236. doi: 10.1038/s41598-017-14554-y |
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2017 Journal Article Fermentation and purification strategies for the production of betulinic acid and its lupane-type precursors in Saccharomyces cerevisiaeCzarnotta, Eik, Dianat, Mariam, Korf, Marcel, Granica, Fabian, Merz, Juliane, Maury, Jerome, Jacobsen, Simo A. Baallal, Forster, Jochen, Ebert, Birgitta E. and Blank, Lars M. (2017). Fermentation and purification strategies for the production of betulinic acid and its lupane-type precursors in Saccharomyces cerevisiae. Biotechnology and Bioengineering, 114 (11), 2528-2538. doi: 10.1002/bit.26377 |
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2017 Journal Article Metabolic response of Pseudomonas putida to increased NADH regeneration ratesZobel, Sebastian, Kuepper, Jannis, Ebert, Birgitta, Wierckx, Nick and Blank, Lars M. (2017). Metabolic response of Pseudomonas putida to increased NADH regeneration rates. Engineering in Life Sciences, 17 (1), 47-57. doi: 10.1002/elsc.201600072 |
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2017 Journal Article Exploration and exploitation of the yeast volatilomeEbert, Birgitta E., Halbfeld, Christoph and Blank, Lars M. (2017). Exploration and exploitation of the yeast volatilome. Current Metabolomics, 5 (2), 102-118. doi: 10.2174/2213235X04666160818151119 |
