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2024 Journal Article Methyl ketones: a comprehensive study of a novel biofuelGruetering, Carolin, Honecker, Christian, Hofmeister, Marius, Neumann, Marcel, Rasspe-Lange, Lukas, Du, Miaomiao, Lehrheuer, Bastian, von Campenhausen, Maximilian, Schuster, Franziska, Surger, Maximilian, Ebert, Birgitta E., Jupke, Andreas, Tiso, Till, Leonhard, Kai, Schmitz, Katharina, Pischinger, Stefan and Blank, Lars M. (2024). Methyl ketones: a comprehensive study of a novel biofuel. Sustainable Energy & Fuels, 8 (9), 2059-2072. doi: 10.1039/d4se00035h |
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2024 Journal Article Synthetically-primed adaptation of Pseudomonas putida to a non-native substrate D-xyloseDvořák, Pavel, Burýšková, Barbora, Popelářová, Barbora, Ebert, Birgitta E., Botka, Tibor, Bujdoš, Dalimil, Sánchez-Pascuala, Alberto, Schöttler, Hannah, Hayen, Heiko, de Lorenzo, Víctor, Blank, Lars M. and Benešík, Martin (2024). Synthetically-primed adaptation of Pseudomonas putida to a non-native substrate D-xylose. Nature Communications, 15 (1) 2666, 1-18. doi: 10.1038/s41467-024-46812-9 |
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2023 Journal Article Expanding Pseudomonas taiwanensis VLB120's acyl‐CoA portfolio: propionate production in mineral salt mediumNeves, Dário, Meinen, Daniel, Alter, Tobias B., Blank, Lars M. and Ebert, Birgitta E. (2023). Expanding Pseudomonas taiwanensis VLB120's acyl‐CoA portfolio: propionate production in mineral salt medium. Microbial Biotechnology, 17 (1) e14309, e14309. doi: 10.1111/1751-7915.14309 |
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2023 Journal Article Cross-species synthetic promoter library: finding common ground between Pseudomonas taiwanensis VLB120 and Escherichia coliNeves, Dário, Liebal, Ulf W., Nies, Salome C., Alter, Tobias B., Pitzler, Christian, Blank, Lars M. and Ebert, Birgitta E. (2023). Cross-species synthetic promoter library: finding common ground between Pseudomonas taiwanensis VLB120 and Escherichia coli. ACS Synthetic Biology, 12 (7), 2029-2040. doi: 10.1021/acssynbio.3c00084 |
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2023 Journal Article Correction to “Engineering Critical Amino Acid Residues of Lanosterol Synthase to Improve the Production of Triterpenoids in <i>Saccharomyces cerevisiae</i>”Guo, Hao, Wang, Huiyan, Chen, Tongtong, Guo, Liwei, Blank, Lars M., Ebert, Birgitta E. and Huo, Yi-Xin (2023). Correction to “Engineering Critical Amino Acid Residues of Lanosterol Synthase to Improve the Production of Triterpenoids in Saccharomyces cerevisiae”. ACS Synthetic Biology, 12 (4), 1377-1377. doi: 10.1021/acssynbio.3c00142 |
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2023 Journal Article Non-invasive monitoring of microbial triterpenoid production using nonlinear microscopy techniquesDianat, Mariam, Münchberg, Ute, Blank, Lars M., Freier, Erik and Ebert, Birgitta E. (2023). Non-invasive monitoring of microbial triterpenoid production using nonlinear microscopy techniques. Frontiers in Bioengineering and Biotechnology, 11 1106566, 1-12. doi: 10.3389/fbioe.2023.1106566 |
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2023 Journal Article Current metabolic engineering strategies for photosynthetic bioproduction in cyanobacteriaSatta, Alessandro, Esquirol, Lygie and Ebert, Birgitta E. (2023). Current metabolic engineering strategies for photosynthetic bioproduction in cyanobacteria. Microorganisms, 11 (2) 455. doi: 10.3390/microorganisms11020455 |
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2022 Journal Article Molecular characterization of cyanobacterial short‐chain prenyltransferases and discovery of a novel GGPP phosphataseSatta, Alessandro, Esquirol, Lygie, Ebert, Birgitta E., Newman, Janet, Peat, Thomas S., Plan, Manuel, Schenk, Gerhard and Vickers, Claudia E. (2022). Molecular characterization of cyanobacterial short‐chain prenyltransferases and discovery of a novel GGPP phosphatase. The FEBS Journal, 289 (21), 6672-6693. doi: 10.1111/febs.16556 |
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2022 Journal Article Ancestral sequence reconstruction of the CYP711 family reveals functional divergence in strigolactone biosynthetic enzymes associated with gene duplication events in monocot grassesVinde, Marcos H., Cao, Da, Chesterfield, Rebecca J., Yoneyama, Kaori, Gumulya, Yosephine, Thomson, Raine E. S., Matila, Tebogo, Ebert, Birgitta E., Beveridge, Christine A., Vickers, Claudia E. and Gillam, Elizabeth M. J. (2022). Ancestral sequence reconstruction of the CYP711 family reveals functional divergence in strigolactone biosynthetic enzymes associated with gene duplication events in monocot grasses. New Phytologist, 235 (5), 1900-1912. doi: 10.1111/nph.18285 |
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2022 Journal Article Engineering critical amino acid residues of lanosterol synthase to improve the production of triterpenoids in Saccharomyces cerevisiaeGuo, Hao, Wang, Huiyang, Chen, Tongtong, Guo, Liwei, Blank, Lars M., Ebert, Birgitta E. and Huo, Yi-Xin (2022). Engineering critical amino acid residues of lanosterol synthase to improve the production of triterpenoids in Saccharomyces cerevisiae. ACS Synthetic Biology, 11 (8), 2685-2696. doi: 10.1021/acssynbio.2c00098 |
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2022 Journal Article Mix and match: promoters and terminators for tuning gene expression in the methylotrophic yeast Ogataea polymorphaWefelmeier, Katrin, Ebert, Birgitta E., Blank, Lars M. and Schmitz, Simone (2022). Mix and match: promoters and terminators for tuning gene expression in the methylotrophic yeast Ogataea polymorpha. Frontiers in Bioengineering and Biotechnology, 10 876316, 1-14. doi: 10.3389/fbioe.2022.876316 |
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2022 Book Chapter Microbial production, extraction, and quantitative analysis of isoprenoidsSatta, Alessandro, Lu, Zeyu, Plan, Manuel R., Esquirol, Lygie and Ebert, Birgitta E. (2022). Microbial production, extraction, and quantitative analysis of isoprenoids. Plant Secondary Metabolism Engineering: methods and protocols.. (pp. 239-259) New York, NY, United States: Humana Press. doi: 10.1007/978-1-0716-2185-1_20 |
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2021 Journal Article Genome-scale model reconstruction of the methylotrophic yeast Ogataea polymorphaLiebal, Ulf W., Fabry, Brigida A., Ravikrishnan, Aarthi, Schedel, Constantin V. l., Schmitz, Simone, Blank, Lars M. and Ebert, Birgitta E. (2021). Genome-scale model reconstruction of the methylotrophic yeast Ogataea polymorpha. BMC Biotechnology, 21 (1) 23, 23. doi: 10.1186/s12896-021-00675-w |
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2021 Journal Article Auxin-mediated protein depletion for metabolic engineering in terpene-producing yeastLu, Zeyu, Peng, Bingyin, Ebert, Birgitta E., Dumsday, Geoff and Vickers, Claudia E. (2021). Auxin-mediated protein depletion for metabolic engineering in terpene-producing yeast. Nature Communications, 12 (1) 1051, 1051. doi: 10.1038/s41467-021-21313-1 |
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2021 Journal Article Auxin‐mediated induction of GAL promoters by conditional degradation of Mig1p improves sesquiterpene production in Saccharomyces cerevisiae with engineered acetyl‐CoA synthesisHayat, Irfan Farabi, Plan, Manuel, Ebert, Birgitta E., Dumsday, Geoff, Vickers, Claudia E. and Peng, Bingyin (2021). Auxin‐mediated induction of GAL promoters by conditional degradation of Mig1p improves sesquiterpene production in Saccharomyces cerevisiae with engineered acetyl‐CoA synthesis. Microbial Biotechnology, 14 (6) 1751-7915.13880, 1-16. doi: 10.1111/1751-7915.13880 |
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2021 Journal Article Proteome regulation patterns determine Escherichia coli wild-type and mutant phenotypesAlter, Tobias B., Blank, Lars M. and Ebert, Birgitta E. (2021). Proteome regulation patterns determine Escherichia coli wild-type and mutant phenotypes. mSystems, 6 (2) e00625-20. doi: 10.1128/msystems.00625-20 |
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2021 Journal Article Corrigendum: Multi-Omics Analysis of Fatty Alcohol Production in Engineered Yeasts Saccharomyces cerevisiae and Yarrowia lipolytica (Front Genet, (2019), 10, (747), 10.3389/fgene.2019.00747)Dahlin, Jonathan, Holkenbrink, Carina, Marella, Eko Roy, Wang, Guokun, Liebal, Ulf, Lieven, Christian, Weber, Dieter, McCloskey, Douglas, Wang, Hong-Lei, Ebert, Birgitta E., Herrgård, Markus J., Blank, Lars Mathias and Borodina, Irina (2021). Corrigendum: Multi-Omics Analysis of Fatty Alcohol Production in Engineered Yeasts Saccharomyces cerevisiae and Yarrowia lipolytica (Front Genet, (2019), 10, (747), 10.3389/fgene.2019.00747). Frontiers in Genetics, 11 637738, 1-2. doi: 10.3389/fgene.2020.637738 |
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2020 Journal Article High titer methyl ketone production with tailored Pseudomonas taiwanensis VLB120Nies, Salome C., Alter, Tobias B., Nölting, Sophia, Thiery, Susanne, Phan, An N.T., Drummen, Noud, Keasling, Jay D., Blank, Lars M. and Ebert, Birgitta E. (2020). High titer methyl ketone production with tailored Pseudomonas taiwanensis VLB120. Metabolic Engineering, 62, 84-94. doi: 10.1016/j.ymben.2020.08.003 |
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2020 Journal Article A systems analysis of NADH dehydrogenase mutants reveals flexibility and limits of Pseudomonas taiwanensis VLB120's metabolismNies, Salome C., Dinger, Robert, Chen, Yan, Wordofa, Gossa G., Kristensen, Mette, Schneider, Konstantin, Büchs, Jochen, Petzold, Christopher J., Keasling, Jay D., Blank, Lars M. and Ebert, Birgitta E. (2020). A systems analysis of NADH dehydrogenase mutants reveals flexibility and limits of Pseudomonas taiwanensis VLB120's metabolism. Applied and Environmental Microbiology, 86 (11) 3819. doi: 10.1128/aem.03038-19 |
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2020 Journal Article Publisher Correction: MEMOTE for standardized genome-scale metabolic model testingLieven, Christian, Beber, Moritz E., Olivier, Brett G., Bergmann, Frank T., Ataman, Meric, Babaei, Parizad, Bartell, Jennifer A., Blank, Lars M., Chauhan, Siddharth, Correia, Kevin, Diener, Christian, Dräger, Andreas, Ebert, Birgitta E., Edirisinghe, Janaka N., Faria, José P., Feist, Adam M., Fengos, Georgios, Fleming, Ronan M. T., García-Jiménez, Beatriz, Hatzimanikatis, Vassily, van Helvoirt, Wout, Henry, Christopher S., Hermjakob, Henning, Herrgård, Markus J., Kaafarani, Ali, Kim, Hyun Uk, King, Zachary, Klamt, Steffen, Klipp, Edda ... Zhang, Cheng (2020). Publisher Correction: MEMOTE for standardized genome-scale metabolic model testing. Nature Biotechnology, 38 (4), 504-504. doi: 10.1038/s41587-020-0477-4 |
