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2018 Journal Article Amniotic ectoderm expansion in mouse occurs via distinct modes and requires SMAD5-mediated signallingDobreva, Mariya P., Escalona, Vanesa Abon, Lawson, Kirstie A., Sanchez, Marina N., Ponomarev, Ljuba C., Pereira, Paulo N. G., Stryjewska, Agata, Criem, Nathan, Huylebroeck, Danny, Lopes, Susana M. Chuva de Sousa, Aerts, Stein and Zwijsen, An (2018). Amniotic ectoderm expansion in mouse occurs via distinct modes and requires SMAD5-mediated signalling. Development, 145 (13) dev157222, dev157222. doi: 10.1242/dev.157222 |
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2018 Journal Article A haplotype information theory method reveals genes of evolutionary interest in European vs. Asian pigsHudson, Nicholas J., Naval-Sánchez, Marina, Porto-Neto, Laercio, Pérez-Enciso, Miguel and Reverter, Antonio (2018). A haplotype information theory method reveals genes of evolutionary interest in European vs. Asian pigs. Journal of Animal Science, 96 (8), 3064-3069. doi: 10.1093/jas/sky225 |
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2018 Journal Article Evolution of sex determination loci in Atlantic salmonKijas, James, McWilliam, Sean, Sanchez, Marina Naval, Kube, Peter, King, Harry, Evans, Bradley, Nome, Torfinn, Lien, Sigbjorn and Verbyla, Klara (2018). Evolution of sex determination loci in Atlantic salmon. Scientific Reports, 8 (1) 5664, 5664. doi: 10.1038/s41598-018-23984-1 |
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2018 Journal Article Mammalian genomic regulatory regions predicted by utilizing human genomics, transcriptomics, and epigenetics dataNguyen, Quan H., Tellam, Ross L., Naval-Sanchez, Marina, Porto-Neto, Laercio R., Barendse, William, Reverter, Antonio, Hayes, Benjamin, Kijas, James and Dalrymple, Brian P. (2018). Mammalian genomic regulatory regions predicted by utilizing human genomics, transcriptomics, and epigenetics data. Gigascience, 7 (3), 1-17. doi: 10.1093/gigascience/gix136 |
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2018 Journal Article Sheep genome functional annotation reveals proximal regulatory elements contributed to the evolution of modern breedsNaval-Sanchez, Marina, Nguyen, Quan, McWilliam, Sean, Porto-Neto, Laercio R., Tellam, Ross, Vuocolo, Tony, Reverter, Antonio, Perez-Enciso, Miguel, Brauning, Rudiger, Clarke, Shannon, McCulloch, Alan, Zamani, Wahid, Naderi, Saeid, Rezaei, Hamid Reza, Pompanon, Francois, Taberlet, Pierre, Worley, Kim C., Gibbs, Richard A., Muzny, Donna M., Jhangiani, Shalini N., Cockett, Noelle, Daetwyler, Hans and Kijas, James (2018). Sheep genome functional annotation reveals proximal regulatory elements contributed to the evolution of modern breeds. Nature Communications, 9 (1) 859. doi: 10.1038/s41467-017-02809-1 |
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2017 Journal Article Nuclear receptors connect progenitor transcription factors to cell cycle controlNeto, Marta, Naval-Sanchez, Marina, Potier, Delphine, Pereira, Paulo S., Geerts, Dirk, Aerts, Stein and Casares, Fernando (2017). Nuclear receptors connect progenitor transcription factors to cell cycle control. Scientific Reports, 7 (1) 4845, 4845. doi: 10.1038/s41598-017-04936-7 |
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2016 Journal Article Genome-wide association reveals the locus responsible for four-horned ruminantKijas, James W., Hadfield, Tracy, Naval Sanchez, Marina and Cockett, Noelle (2016). Genome-wide association reveals the locus responsible for four-horned ruminant. Animal Genetics, 47 (2), 258-62. doi: 10.1111/age.12409 |
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2015 Journal Article Identification of lineage-specific Cis-regulatory modules associated with variation in transcription factor binding and chromatin activity using Ornstein-Uhlenbeck modelsNaval-Sanchez, Marina, Potier, Delphine, Hulselmans, Gert, Christiaens, Valerie and Aerts, Stein (2015). Identification of lineage-specific Cis-regulatory modules associated with variation in transcription factor binding and chromatin activity using Ornstein-Uhlenbeck models. Molecular Biology and Evolution, 32 (9), 2441-2455. doi: 10.1093/molbev/msv107 |
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2014 Journal Article Mapping gene regulatory networks in Drosophila eye development by large-scale transcriptome perturbations and motif inferencePotier, Delphine, Davie, Kristofer, Hulselmans, Gert, Sanchez, Marina Naval, Haagen, Lotte, Van Anh Huynh-Thu,, Koldere, Duygu, Celik, Arzu, Geurts, Pierre, Christiaens, Valerie and Aerts, Stein (2014). Mapping gene regulatory networks in Drosophila eye development by large-scale transcriptome perturbations and motif inference. Cell Reports, 9 (6), 2290-2303. doi: 10.1016/j.celrep.2014.11.038 |
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2014 Journal Article iRegulon: From a gene list to a gene regulatory network using large motif and track collectionsJanky, Rekin's, Verfaillie, Annelien, Imrichova, Hana, Van de Sande, Bram, Standaert, Laura, Christiaens, Valerie, Hulselmans, Gert, Herten, Koen, Sanchez, Marina Naval, Potier, Delphine, Svetlichnyy, Dmitry, Atak, Zeynep Kalender, Fiers, Mark, Marine, Jean-Christophe and Aerts, Stein (2014). iRegulon: From a gene list to a gene regulatory network using large motif and track collections. PLOS Computational Biology, 10 (7) e1003731, e1003731. doi: 10.1371/journal.pcbi.1003731 |
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2013 Journal Article Comparative motif discovery combined with comparative transcriptomics yields accurate targetome and enhancer predictionsNaval-Sanchez, Marina, Potier, Delphine, Haagen, Lotte, Sanchez, Maximo, Munck, Sebastian, Van de Sande, Bram, Casares, Fernando, Christiaens, Valerie and Aerts, Stein (2013). Comparative motif discovery combined with comparative transcriptomics yields accurate targetome and enhancer predictions. Genome Research, 23 (1), 74-88. doi: 10.1101/gr.140426.112 |
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2013 Journal Article TDP-43 loss-of-function causes neuronal loss due to defective steroid receptor-mediated gene program switching in DrosophilaBroeck, Lies Vanden, Naval-Sanchez, Marina, Adachi, Yoshitsugu, Diaper, Danielle, Dourlen, Pierre, Chapuis, Julien, Kleinberger, Gernot, Gistelinck, Marc, Van Broeckhoven, Christine, Lambert, Jean-Charles, Hirth, Frank, Aerts, Stein, Callaerts, Patrick and Dermaut, Bart (2013). TDP-43 loss-of-function causes neuronal loss due to defective steroid receptor-mediated gene program switching in Drosophila. Cell Reports, 3 (1), 160-172. doi: 10.1016/j.celrep.2012.12.014 |
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2012 Book Chapter Using cisTargetX to predict transcriptional targets and networks in DrosophilaPotier, Delphine, Atak, Zeynep Kalender, Sanchez, Marina Naval, Herrmann, Carl and Aerts, Stein (2012). Using cisTargetX to predict transcriptional targets and networks in Drosophila. Gene regulatory networks: methods and protocols. (pp. 291-314) edited by Bart Deplancke and Nele Gheldof. New York, NY, United States: Humana Press. doi: 10.1007/978-1-61779-292-2_18 |
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2010 Journal Article Robust target gene discovery through transcriptome perturbations and genome-wide enhancer predictions in drosophila uncovers a regulatory basis for sensory specificationAerts, Stein, Quan, Xiao-Jiang, Claeys, Annelies, Sanchez, Marina Naval, Tate, Phillip, Yan, Jiekun and Hassan, Bassem A. (2010). Robust target gene discovery through transcriptome perturbations and genome-wide enhancer predictions in drosophila uncovers a regulatory basis for sensory specification. PLoS Biology, 8 (7) e1000435, e1000435. doi: 10.1371/journal.pbio.1000435 |
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2008 Journal Article Measurement of free zinc concentration in wine with AGNESCompanys, Encarnacio, Naval-Sanchez, Marina, Martinez-Micaelo, Neus, Puy, Jaume and Galceran, Josep (2008). Measurement of free zinc concentration in wine with AGNES. Journal of Agricultural and Food Chemistry, 56 (18), 8296-8302. doi: 10.1021/jf8013475 |
