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2025 Journal Article Is the biogeography of the mucosa-associated microbiota a key factor affecting primary sclerosing cholangitis disease course and treatment?Lim, Yenkai, Kang, Seungha, Shah, Ayesha, Holtmann, Gerald and Morrison, Mark (2025). Is the biogeography of the mucosa-associated microbiota a key factor affecting primary sclerosing cholangitis disease course and treatment?. Gut, 74 (4), 692-693. doi: 10.1136/gutjnl-2024-334069 |
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2024 Journal Article Maternal high fat diet induces circadian clock-independent endocrine alterations impacting the metabolism of the offspringDing, Lu, Weger, Benjamin D., Liu, Jieying, Zhou, Liyuan, Lim, Yenkai, Wang, Dongmei, Xie, Ziyan, Liu, Jing, Ren, Jing, Zheng, Jia, Zhang, Qian, Yu, Miao, Weger, Meltem, Morrison, Mark, Xiao, Xinhua and Gachon, Frédéric (2024). Maternal high fat diet induces circadian clock-independent endocrine alterations impacting the metabolism of the offspring. iScience, 27 (7) 110343, 110343. doi: 10.1016/j.isci.2024.110343 |
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2021 Journal Article The salivary metatranscriptome as an accurate diagnostic indicator of oral cancerBanavar, Guruduth, Ogundijo, Oyetunji, Toma, Ryan, Rajagopal, Sathyapriya, Lim, Yen Kai, Tang, Kai, Camacho, Francine, Torres, Pedro J., Gline, Stephanie, Parks, Matthew, Kenny, Liz, Perlina, Ally, Tily, Hal, Dimitrova, Nevenka, Amar, Salomon, Vuyisich, Momchilo and Punyadeera, Chamindie (2021). The salivary metatranscriptome as an accurate diagnostic indicator of oral cancer. npj Genomic Medicine, 6 (1) 105, 105. doi: 10.1038/s41525-021-00257-x |
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2021 Journal Article Chemoradiation therapy changes oral microbiome and metabolomic profiles in patients with oral cavity cancer and oropharyngeal cancerLim, Yenkai, Tang, Kai Dun, Karpe, Avinash V., Beale, David J., Totsika, Makrina, Kenny, Liz, Morrison, Mark and Punyadeera, Chamindie (2021). Chemoradiation therapy changes oral microbiome and metabolomic profiles in patients with oral cavity cancer and oropharyngeal cancer. Head and Neck, 43 (5), 1521-1534. doi: 10.1002/hed.26619 |
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2020 Journal Article The use of three-dimensional DNA fluorescent in situ hybridization (3D DNA FISH) for the detection of Anaplastic Lymphoma Kinase (ALK) in Non-Small Cell Lung Cancer (NSCLC) circulating tumor cellsKulasinghe, Arutha, Lim, Yenkai, Kapeleris, Joanna, Warkiani, Majid, O'Byrne, Ken and Punyadeera, Chamindie (2020). The use of three-dimensional DNA fluorescent in situ hybridization (3D DNA FISH) for the detection of Anaplastic Lymphoma Kinase (ALK) in Non-Small Cell Lung Cancer (NSCLC) circulating tumor cells. Cells, 9 (6) 1465, 1-8. doi: 10.3390/cells9061465 |
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2020 Journal Article Chronic high-fat diet induces early Barrett’s esophagus in mice through lipidome remodelingMolendijk, Jeffrey, Nguyen, Thi-My-Tam, Brown, Ian, Mohamed, Ahmed, Lim, Yenkai, Barclay, Johanna, Hodson, Mark P., Hennessy, Thomas P., Krause, Lutz, Morrison, Mark and Hill, Michelle M. (2020). Chronic high-fat diet induces early Barrett’s esophagus in mice through lipidome remodeling. Biomolecules, 10 (5) 776, 776. doi: 10.3390/biom10050776 |
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2018 Journal Article The performance of an oral microbiome biomarker panel in predicting oral cavity and oropharyngeal cancersLim, Yenkai, Fukuma, Naoki, Totsika, Makrina, Kenny, Liz, Morrison, Mark and Punyadeera, Chamindie (2018). The performance of an oral microbiome biomarker panel in predicting oral cavity and oropharyngeal cancers. Frontiers in Cellular and Infection Microbiology, 8 (AUG) 267, 267. doi: 10.3389/fcimb.2018.00267 |
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2018 Journal Article A pilot study to investigate the feasibility of transporting saliva samples at room temperature with MAWI Cell Stabilization bufferLim, Yenkai and Punyadeera, Chamindie (2018). A pilot study to investigate the feasibility of transporting saliva samples at room temperature with MAWI Cell Stabilization buffer. Cogent Biology, 4 (1) 1470895. doi: 10.1080/23312025.2018.1470895 |
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2017 Journal Article The saliva microbiome profiles are minimally affected by collection method or DNA extraction protocolsLim, Yenkai, Totsika, Makrina, Morrison, Mark and Punyadeera, Chamindie (2017). The saliva microbiome profiles are minimally affected by collection method or DNA extraction protocols. Scientific Reports, 7 (1) 8523, 8523. doi: 10.1038/s41598-017-07885-3 |
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2017 Journal Article A pilot study into the association between oral health status and human papillomavirus-16 infectionSun, Charles Xiaohang, Bennett, Nigel, Tran, Peter, Tang, Kai Dun, Lim, Yenkai, Frazer, Ian, Samaranayake, Lakshman and Punyadeera, Chamindie (2017). A pilot study into the association between oral health status and human papillomavirus-16 infection. Diagnostics, 7 (1) 11, 11. doi: 10.3390/diagnostics7010011 |
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2017 Journal Article Oral microbiome: a new biomarker reservoir for oral and oropharyngeal cancersLim, Yenkai, Totsika, Makrina, Morrison, Mark and Punyadeera, Chamindie (2017). Oral microbiome: a new biomarker reservoir for oral and oropharyngeal cancers. Theranostics, 7 (17), 4313-4321. doi: 10.7150/thno.21804 |
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2016 Journal Article Salivary DNA methylation panel to diagnose HPV-positive and HPV-negative head and neck cancersLim, Yenkai, Wan, Yunxia, Vagenas, Dimitrios, Ovchinnikov, Dmitry A., Perry, Chris F. L., Davis, Melissa J. and Punyadeera, Chamindie (2016). Salivary DNA methylation panel to diagnose HPV-positive and HPV-negative head and neck cancers. BMC Cancer, 16 (1) 749, 1-12. doi: 10.1186/s12885-016-2785-0 |
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2016 Journal Article A pilot study to compare the detection of HPV-16 biomarkers in salivary oral rinses with tumour p16(INK4a) expression in head and neck squamous cell carcinoma patientsChai, Ryan C., Lim, Yenkai, Frazer, Ian H., Wan, Yunxia, Perry, Christopher, Jones, Lee, Lambie, Duncan and Punyadeera, Chamindie (2016). A pilot study to compare the detection of HPV-16 biomarkers in salivary oral rinses with tumour p16(INK4a) expression in head and neck squamous cell carcinoma patients. Bmc Cancer, 16 (1) 178, 178. doi: 10.1186/s12885-016-2217-1 |
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2016 Journal Article Salivary epigenetic biomarkers in head and neck squamous cell carcinomasLim, Yenkai, Sun, Charles Xiaohang, Tran, Peter and Punyadeera, Chamindie (2016). Salivary epigenetic biomarkers in head and neck squamous cell carcinomas. Biomarkers in Medicine, 10 (3), 301-313. doi: 10.2217/bmm.16.2 |
